Strategies of soilborne plant pathogenic fungi in relation to disease suppression

Andrews, 1982, Plant pathogens and the theory of r- and K-selection, American Naturalist, 120, 283, 10.1086/283991 Aryantha, 2000, Suppression of Phytophthora cinnamomi in potting mixes amended with uncomposted and composted animal manures, Phytopathology, 90, 775, 10.1094/PHYTO.2000.90.7.775 Bailey, 1999, Dynamics of primary and secondary infection in take-all epidemics, Phytopathology, 89, 84, 10.1094/PHYTO.1999.89.1.84 Baker, 1974 Benítez, 2007, Multiple statistical approaches of community fingerprint data reveal bacterial populations associated with general disease suppression arising from the application of different organic field management strategies, Soil Biology & Biochemistry, 39, 2289, 10.1016/j.soilbio.2007.03.028 Bergsma-Vlami, 2005, Influence of plant species on population dynamics, genotypic diversity and antibiotic production in the rhizosphere by indigenous Pseudomonas spp, FEMS Microbial Ecology, 52, 59, 10.1016/j.femsec.2004.10.007 Bonanomi, 2007, Suppression of soilborne fungal diseases with organic amendments, Journal of Plant Pathology, 89, 311 Boulter, 2002, Microbial studies of compost: bacterial identification and their potential for turfgrass pathogen suppression, World Journal of Microbiology & Biotechnology, 18, 661, 10.1023/A:1016827929432 Brimecombe, 2001, The effect of root exudates on rhizosphere microbial population, 95 Costa, 2006, Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of microbial guilds, FEMS Microbial Ecology, 56, 236, 10.1111/j.1574-6941.2005.00026.x Croteau, 1998, Influence of papermill processing residuals on saprophytic growth and disease caused by Rhizoctonia solani, Applied Soil Ecology, 10, 103, 10.1016/S0929-1393(98)00035-3 Deacon, 1992, Stephen Denis Garrett: pioneer leader in plant pathology, Annual Review of Phytopathology, 30, 27, 10.1146/annurev.py.30.090192.000331 de Boer, 2002, Microbial community composition affects soil fungistasis, Applied and Environmental Microbiology, 69, 835, 10.1128/AEM.69.2.835-844.2003 de Boer, 2007, In vitro suppression of fungi caused by combinations of apparently non-antagonistic soil bacteria, FEMS Microbiology Ecology, 59, 177, 10.1111/j.1574-6941.2006.00197.x Dobzhansky, 1950, Evolution in the tropics, American Scientist, 38, 209 Duffy, 1997, Soil chemical and physical properties associated with suppression of take-all of wheat by Trichoderma koningii, Phytopathology, 87, 1118, 10.1094/PHYTO.1997.87.11.1118 Fontaine, 2003, The priming effect of organic matter: a question of microbial competition?, Soil Biology & Biochemistry, 35, 837, 10.1016/S0038-0717(03)00123-8 Garbeva, 2004, Microbial diversity in soil: selection of microbial populations by plant and soil type and implications for disease suppressiveness, Annual Review of Phytopathology, 42, 243, 10.1146/annurev.phyto.42.012604.135455 Garrett, 1951, Ecological groupings of soil fungi: a survey of substrate relationships, New Phytologist, 50, 149, 10.1111/j.1469-8137.1951.tb05179.x Garrett, 1970 Gordon, 1997, The evolutionary biology of Fusarium oxysporum, Annual Review of Phytopathology, 35, 111, 10.1146/annurev.phyto.35.1.111 Grime, 1979 Gubbins, 1997, Biological control in a disturbed environment, Philosophical Transactions of the Royal Society of London B, 352, 1935, 10.1098/rstb.1997.0180 Hoitink, 1999, Biocontrol within the context of soil microbial communities: a soil-dependent phenomenon, Annual Review of Phytopathology, 37, 427, 10.1146/annurev.phyto.37.1.427 Ikeda, 2005, Comparison between Rosselinia necatrix isolates from soil and diseased roots in terms of hypovirulence, FEMS Microbiology Ecology, 54, 307, 10.1016/j.femsec.2005.04.004 Jaeger, 1999, Mapping of sugar and amino acid availability in soil around roots with bacterial sensors of sucrose and tryptophan, Applied and Environmental Microbiology, 65, 2685, 10.1128/AEM.65.6.2685-2690.1999 Jeger, 1996, Pathology and control of soil-borne fungal pathogens of potato, Potato Research, 39, 437, 10.1007/BF02357949 Jeger, 2008, A fungal growth model fitted to carbon-limited dynamics of Rhizoctonia solani, New Phytologist, 178, 625, 10.1111/j.1469-8137.2008.02394.x Kjøller, 1992, Functional groups of microfungi in decomposition, 619 Knudsen, 2002, Potential suppressiveness of different field soils to Pythium damping-off of sugar beet, Applied Soil Ecology, 21, 119, 10.1016/S0929-1393(02)00086-0 Landa, 2001, Influence of temperature and inoculum density of Fusarium oxysporum f. sp. ciceri on suppression of fusarium wilt of chickpea by rhizosphere bacteria, Phytopathology, 91, 807, 10.1094/PHYTO.2001.91.8.807 Larkin, 1999, Mechanisms of action and dose-response relationships governing biological control of fusarium wilt of tomato by nonpathogenic Fusarium spp, Phytopathology, 89, 1152, 10.1094/PHYTO.1999.89.12.1152 Lockwood, 1977, Fungistasis in soils, Biological Reviews, 52, 1, 10.1111/j.1469-185X.1977.tb01344.x Martin, 1999, Soilborne plant diseases caused by Pythium spp.: ecology, epidemiology, and prospects for biological control, Critical Reviews in Plant Sciences, 18, 111, 10.1016/S0735-2689(99)00389-5 Mazzola, 2002, Mechanisms of natural soil suppressiveness to soilborne diseases, Antonie van Leeuwenhoek, 81, 557, 10.1023/A:1020557523557 McKellar, 2003, Compost-induced suppression of Pythium damping-off is mediated by fatty-acid-metabolizing seed-colonizing microbial communities, Applied and Environmental Microbiology, 69, 452, 10.1128/AEM.69.1.452-460.2003 Noble, 2005, Suppression of soil-borne plant diseases with composts: a review, Biocontrol Science and Technology, 15, 3, 10.1080/09583150400015904 Ochiai, 2008, Green manure effects on soil quality in relation to suppression of Verticillium wilt of potatoes, Biology and Fertility of Soils, 44, 1013, 10.1007/s00374-008-0289-z Otten, 2004, Empirical evidence of spatial thresholds to control invasion of fungal parasites and saprotrophs, New Phytologist, 163, 125, 10.1111/j.1469-8137.2004.01086.x Oyarzun, 1997, Comparison of soil receptivity to Thielaviopsis basicola, Aphanomyces euteiches, and Fusarium solani f. sp. pisi causing root rot in pea, Phytopathology, 87, 534, 10.1094/PHYTO.1997.87.5.534 Pieterse, 2001, Rhizobacteria-mediated induced resistance: triggering, signalling and expression, European Journal of Plant Pathology, 107, 51, 10.1023/A:1008747926678 Raaijmakers, 1998, Natural plant protection by 2,4-diacetylphloroglucinol-producing Pseudomonas spp. in take-all decline soils, Molecular Plant–Microbe Interactions, 11, 144, 10.1094/MPMI.1998.11.2.144 Rekah, 2000, Disease development following infection of tomato and basil foliage by airborne conidia of the soilborne pathogens Fusarium oxysporum f. sp. radicis-lycopersici and F. oxysporum f. sp. basilici, Phytopathology, 90, 1322, 10.1094/PHYTO.2000.90.12.1322 Scheuerell, 2005, Suppression of seedling damping-off caused by Pythium ultimum, P. irregulare, and Rhizoctonia solani in container media amended with a diverse range of Pacific Northwest compost sources, Phytopathology, 95, 306, 10.1094/PHYTO-95-0306 Scott, 1995, A mathematical model for dispersal of bacterial inoculants colonizing the wheat rhizosphere, Soil Biology & Biochemistry, 27, 1307, 10.1016/0038-0717(95)00050-O Shishido, 2005, Biological control efficiency of Fusarium wilt of tomato by nonpathogenic Fusarium oxysporum Fo-B2 in different environments, Phytopathology, 95, 1072, 10.1094/PHYTO-95-1072 Simon, 1989, Pathogen suppression: A case study in biological suppression of Gaeumannomyces graminis var. tritici in soil, Soil Biology & Biochemistry, 21, 331, 10.1016/0038-0717(89)90139-9 Strigul, 2006, Mathematical model of PGPR inoculation into the rhizosphere, Environmental Modelling & Software, 21, 1158, 10.1016/j.envsoft.2005.06.003 Termorshuizen, 2006, Suppressiveness of 18 composts against 7 pathosystems: variability in pathogen response, Soil Biology & Biochemistry, 38, 2461, 10.1016/j.soilbio.2006.03.002 Tscherko, 2004, Shifts in rhizosphere microbial communities and enzyme activity of Poa alpina across an alpine chronosequence, Soil Biology & Biochemistry, 36, 1685, 10.1016/j.soilbio.2004.07.004 van den Boogert, 1988, Assessment of Verticillium biguttatum in agricultural soils, Soil Biology & Biochemistry, 20, 899, 10.1016/0038-0717(88)90101-0 van Rijn E. 2007. Disease suppression and phytosanitary aspects of compost. PhD thesis, Wageningen University. Vanterpool, 1952, The phenomenal decline of browning root rot (Pythium spp.) on the Canadian prairies, Scientific Agriculture, 32, 443 Vilgalys, 1994, Molecular systematics and population biology of Rhizoctonia, Annual Review of Phytopathology, 32, 135, 10.1146/annurev.py.32.090194.001031 Watson, 1972, Soil fungistasis – a reappraisal, Annual Review of Phytopathology, 10, 327, 10.1146/annurev.py.10.090172.001551 Weller, 2002, Microbial populations responsible for specific soil suppressiveness to plant pathogens, Annual Review of Phytopathology, 40, 309, 10.1146/annurev.phyto.40.030402.110010 Wilberforce, 2003, Agricultural management affects communities of cultural root-endophytic fungi in temperate grasslands, Soil Biology & Biochemistry, 35, 1143, 10.1016/S0038-0717(03)00176-7 You, 1995, Changes in microbial populations of an avocado plantation mulch suppressive of Phytophthora cinnamomi, Applied Soil Ecology, 2, 33, 10.1016/0929-1393(95)98123-C You, 1996, Actinomycetes in organic mulch used in avocado plantations and their ability to suppress Phytophthora cinnamomi, Biology and Fertility of Soils, 22, 237, 10.1007/BF00382518 Zak, 1996, An appraisal of soil fungal biodiversity: the crossroads between taxonomic and functional biodiversity, Biodiversity and Conservation, 5, 169, 10.1007/BF00055828