Biochemical and phylogenetic characterization of a novel terrestrial hyperthermophilic archaeon pertaining to the genus Pyrococcus from an Algerian hydrothermal hot spring

Springer Science and Business Media LLC - Tập 11 Số 1 - Trang 65-73 - 2007
Mouloud Kecha1,2, Saı̈d Benallaoua1, Jean Pierre Touzel3, R. Bonaly4, Francis Duchiron2
1Laboratoire de Microbiologie Appliquée/Biochimie Microbienne, Université A. Mira, Bejaia, Algeria
2Laboratoire de Microbiologie Industrielle, URCA Université de Reims Champagne Ardenne, Reims Cedex 02, France
3INRA, UMR FARE, Reims Cedex 02, France
4Laboratoire de Chimie Physique et Microbiologie pour l’Environnement (LCPME)-UMR. 7564 CNRS-UHP, Université Henry Poincaré, Nancy I, Villers-lès-Nancy, France

Tóm tắt

Từ khóa


Tài liệu tham khảo

Antoine E, Guezennec J, Meunier JR, Lesongeur F, Barbier G (1995) Isolation and characterization of extremely thermophilic Archaeabacteria related to the genus Thermococcus from deep-sea hydrothermal guaymas basin. Curr Microbiol 31(3):186–192

Balch WE, Wolfe RS (1976) New approach to cultivation of methanogenic bacteria: 2-mercaptoethane-sulfonic acid (HS-CoM)-dependent growth of Methanobacterium ruminantium in a pressurized atmosphere. Appl Environ Microbiol 32:781–791

Barbier G (1995) Micro-organismes thermophiles. Bull Soc Fr Microbiol 9:13–18

Barbier G, Godfroy A, Meunier JR, Quérellou J, Cambon MA, Lesongeur F, Grimont PAD, Raguénès G (1999) Pyrococcus glycovorans sp. nov., a hyperthermophilic archaeon isolated from the East Pacific Rise. Int J Syst Bacteriol 49(4):1829–1837

Belkin S, Jannasch HW (1985) A new extremely thermophilic sulfur-reducing heterotrophic marine bacterium. Arch Microbiol 141(3):181–186

Blumentals II, Itoh M, Olson GJ, Kelly RM (1990) Role of polysulfides in reduction of elemental sulfur by the hyperthermophilic archaebacterium Pyrococcus furiosus. Appl Environ Microbiol 56(5):1255–1262

Canganella F, Jack Jones W, Gambacorta A, Antranikian G (1997) Biochemical and phylogenetic characterization of two novel deep-sea Thermococcus isolates with potentially biotechnological applications. Arch Microbiol 167(4):233–238

Cavalier-Smith T(2002) The neomuran origin of archaeabacteria, the negibacterial root of the universal tree and bacterial megaclassification. Int J Syst Evol Microbiol 52(1):7–76

Cline JD (1969) Spectrophotometric determination of hydrogen sulfide in natural waters. Limnol Oceanogr 14:454–458

Cole JR, Chai B, Marsh TL, Farris RJ, Wang Q, Kulam SA, Chandra S, McGarrell DM, Schmidt TM, Garrity GM, Tiedje JM (2003) The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31(1):442–443

De Rosa M, Gambacorta A (1988) The lipids of archaebacteria. Prog Lipid Res 27(3):153–175

Erauso M, Raysenbach AL, Godfroy A, Meunier JR, Crump B, Partensky F, Baross A, Marteinsson V, Barbier G, Pace NR, Prieur D (1993) Pyrococcus abyssi sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent. Arch Microbiol 160(5):338–349

Fiala G, Stetter KO (1986) Pyrococcus furiosus sp. nov. represents a new genus of marine heterotrophic archaeabacteria growing optimally at 100°C. Arch Microbiol 145:56–61

Godfroy A, Meunier JR, Guezennec J, Lesongeur F, Raguénès G, Rimbault A, Barbier G (1996) Thermococcus fumicolans sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent in the North Fiji basin. Int J Syst Bacteriol 46(4):1113–1119

Godfroy A, Lesongeur F, Raguénès G, Quérellou J, Antoine E, Meunier JR, Guezennec J, Barbier G (1997) Thermococcus hydrothermalis sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent. Int J Syst Bacteriol 47(3):622–626

González JM, Kato C, Horikoshi K (1995) Thermococcus peptonophilus sp. nov., a fast growing, extremely thermophilic archeabacterium isolated from deep-sea hydrothermal vents. Arch Microbiol 164(3):159–164

González JM, Masuchi Y, Robb FT, Ammerman JW, Maeder DL, Yanagibayashi M, Tamaoka J, Kato C (1998) Pyrococcus horikoshii, sp. nov., a hyperthermophilic archaeon isolated from a hydrothermal vent at the Okinawa Trough. Extremophiles 2(2):123–130

González JM, Sheckells D, Viebahn M, Krupatkina D, Borges KM, Robb FT (1999) Thermococcus waiotapuensis sp. nov., an extremely thermophilic archaeon isolated from a freshwater hot spring. Arch Microbiol 172(2):95–101

Hilpert R, Winter J, Hammes W, Kandler O (1981) The sensivity of archaebacteria to antibiotics. Zentralbl Bakt. Hyg 1 Abt Orig C 2:11–20

Holt JG, Krieg NR, Staley JT (1994) The Archaeabacteria. In: Holt JG (ed) Bergey’s manual of determinative bacteriology, 9th edn. Williams & Wilkins, Baltimore, pp 747–755

Huber R, Langworthy TA, König H, Thomm M, Woese CR, Sleytr UB, Stetter KO (1986) Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90°C. Arch Microbiol 144(4):324–333

Ingoverson K, Jörgensen BB (1979) Combined measurement of oxygen and sulfide in water samples. Limnol Oceanogr 24:390–393

Kanoksilapatham W, González JM, Maeder DL, DiRuggiero J, Robb FT (2004). A proposal to rename the hyperthermophile Pyrococcus woesei as Pyrococcus furiosus subsp. woesei. Archaea 1:277–283

Keller M, Braun FJ, Dirmeier R, Hafenbradl D, Burggraf S, Rachel R, Stetter KO (1995) Thermococcus alcaliphilus sp. nov., a new hyperthermophilic archaeum growing on polysulfide at alkaline pH. Arch Microbiol 164(6):390–395

Kimura J (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120

Klages KU, Morgan HW (1994) Characterization of an extremely thermophilic sulfur metabolizing archaebacterium belonging to the Thermococcales. Arch Microbiol 162:261–266

Marmur J, Doty P (1962) Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5:109–118

Miller JF, Shah NN, Nelson CN, Ludlow JM, Clark DS (1988) Pressure and temperature effects on growth and methane production of the extreme thermophile Methanococcus jannaschii. Appl Environ Microbiol 54:3029–3042

Oliver O, Thomm M (2000) A simplified method for the cultivation of extreme anaerobic archaea based on the use of sodium sulfite as reducing agent. Extremophiles 4:247–252

Rainey FA, Ward-Rainey N, Kroppenstedt RM, Stackebrandt E (1996) The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct Actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46(4):1088–1092

Rominus RS, Reysenbach A-L, Musgrave DR, Morgan HW (1997) The phylogenetic position of the Thermococcus isolate AN1 based on 16S rRNA gene sequence analysis: a proposal that AN1 represents a new species, Thermococcus zilligii sp. nov. Arch microbiol 168:245–248

Stetter KO (1998) Hyperthermophiles: isolation, classification and properties. In: Horikoshi K, Grant WD (eds) Extremophiles: microbial life in extreme environments. Wiley, New York, pp 1–24

Schauder R, Kröger A (1993) Bacterial sulphur respiration. Arch Microbiol 159(6):491–497

Tachibana Y, Karumura A, Shirasaka N, Suzuki Y, Yamamoto T, Fujiwara S, Takaji M, Imanaka T (1999) Purification and characterization of an extremely thermostable cyclomaltodextrin glucanotransferase from a newly isolated hyperthermophilic archaeon, a Thermococcus sp. Appl Environ Microbiol 65(5):1991–1997

Tajima F, Nei M (1984) Estimation of evolutionary distances between nucleotide sequences. Mol Biol Evol 1(3):269–285

Takai K, Sugai A, Itoh T, Horikoshi K (2000) Paleococcus ferrophilus gen. nov., sp. nov., a barophilic, hyperthermophilic archeon from a deep-sea hydrothermal vent chimney. Int J Syst Evol Microbiol 50(2):489–500

Van de Peer Y, De Wachter R (1994) TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10:569–570

Veille C, Zeikus G (2000) Hyperthermophilic enzymes: sources, uses and molecular mechanisms for thermostability. Microbiol Mol Biol Rev 65(1):1–43

Woese CR, Kandler O, Wheelis ML (1990) Towards a natural system of organisms. Proposal for domains Archaea, Bacteria and Eucarya. Proc Nat Acad Sci USA 87(15):4576–4579

Zillig W (1992) The order Thermococcales. In: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer K-H (eds) The prokaryotes. A handbook on the biology of bacteria: ecophysiology, isolation, identification, applications, vol 1, 2nd edn. Springer, Berlin Heidelberg New York, pp 702–706

Zillig W, Holz I, Janekovic D, Schäfer W, Reiter WD (1983) The archaeabacterium Thermococcus celer represents a novel genus within the thermophilic branch of the archaebacteria. Syst Appl Microbiol 4:88–94

Zillig W, Holz I, Klenk H-P, Trent J, Wunderl S, Janekovic D, Imsel E, Haas B (1987) Pyrococcus woesei sp. nov., an ultra-thermophilic marine archaebacterium representing a novel order, Thermococcales. Syst Appl Microbiol 9:62–70