Genetic typing of classical swine fever virus

Veterinary Microbiology - Tập 73 - Trang 137-157 - 2000
D.J Paton1, A McGoldrick1, I Greiser-Wilke2, S Parchariyanon3, J.-Y Song4, P.P Liou5, T Stadejek6, J.P Lowings1, H Björklund7, S Belák7
1Veterinary Laboratories Agency (Weybridge), Addlestone, Surrey KT15 3NB, UK
2Institute of Virology, Veterinary School Hannover, Buenteweg 17, 30559 Hannover, Germany
3National Institute of Animal Health, Bangkhen, Bangkok 109000, Thailand
4National Veterinary Research and Quarantine Service, 480 Anyang 6 Dong, Anyang 430-016, South Korea
5Taiwan Animal Health Research Institute, 376 Chung-Cheng Road, Tansui, Taipei 25101, Taiwan
6National Veterinary Research Institute, P-24-100 Pulawy, Poland
7Department of Virology, National Veterinary Institute, Biomedical Center, PO Box 585, S-751 23 Uppsala, Sweden

Tài liệu tham khảo

Anon, 1962 History of hog cholera research in the US Department of Agriculture 1884–1960. Agriculture Information Bulletin No 241, Agriculture Research Service, US Department of Agriculture, Washington, DC, January 1962. Bartak, P., Greiser-Wilke, I. Genetic typing of CSF virus isolates from the territory of the Czech Republic. Vet. Microbiol., in press. Björklund, 1998, Molecular characterization of the 3’ noncoding region of classical swine fever vaccine strains, Virus Genes, 16, 307, 10.1023/A:1008095109033 Björklund, H., Lowings, P., Paton, D., Stadejek, T., Vilcek. S., Greiser-Wilke, I., Belák, S., 1999 Phylogenetic comparison and molecular epidemiology of classical swine fever virus. Virus Genes, 19, 189–195. Clewley, 1999, A user’s guide to producing and interpreting tree diagrams in taxonomy and phylogenetics Part 2. The multiple alignment of DNA and protein sequences to determine their relationships, Communicable Disease and Public Health, 1, 132 de Arce, H.D., Frias, M.T., Barrera, M., Ganges, L., Nunez, J.I., Sobrino, F., 1998. Analysis of genomic differences between Cuban classical swine fever virus isolates. Poster presentation, OIE symposium on classical swine fever, Birmingham, United Kingdom, 9–10 July, 1998. Edwards, S., Fukusho, A., Lefevre, P., Lipowski, A., Pejsak, Z., Roehe, P., Westergaard, J. 2000. Classical swine fever: the global situation. Vet. Microbiol. 73, 103–119 Felsenstein, 1989, Phylip phylogeny inference package (version 3.5c), Cladistics, 5, 164 Fritzemeier, J., Greiser-Wilke, I., Depner, K., Moennig, V., The epidemiology of CSF in Germany between 1993 and 1997. Report on annual meeting of the national swine fever laboratories, Vienna, Austria, 16–17 June 1997, Document V1/7888/97, Commission of the European Communities pp. 33–35. Greiser-Wilke, 1998, Application of a computer program for genetic typing of classical swine fever virus isolates from Germany, J. Virol. Methods, 75, 141, 10.1016/S0166-0934(98)00109-8 Greiser-Wilke, I., Fritzemeier, J., Koenen, F., Vanderhallen, H., Rutili, D., De Mia, G.-M., Romero, L., Sanchez-Vizcaino, J.M., San Gabriel, A. Molecular epidemiology of a large classical swine fever epizootic in the European Community in 1997–1998. Vet. Microbiol., in press. Greiser-Wilke, 2000, Structure and presentation of a database in the World Wide Web of the CSF virus isolates held at the EU reference laboratory, Vet. Microbiol., 73, 131, 10.1016/S0378-1135(00)00140-1 Harding, 1996, Evaluation of nucleic acid amplification methods for the detection of hog cholera virus, J. Vet. Diagn. Investigation, 8, 414, 10.1177/104063879600800402 Hofmann, 1994, Rapid characterization of new pestivirus strains by direct sequencing of PCR- amplified cDNA from the 5’ noncoding region, Arch. Virol., 139, 219, 10.1007/BF01309467 Hofmann, M.A., Bossy, S., 1997. The 5’NTR of the classical swine fever virus genome is suitable for a detailed strain discrimination. Poster presented at the 4th International Congress of Veterinary Virology, Edinburgh, August 24–27, 1997. Hofmann, 1998, Classical swine fever in 1993 in Switzerland: molecular-epidemiologic characterization of the virus isolate, Schweiz. Arch. Tierheilkd., 140, 365 Ishikawa, 1995, Comparison of the entire nucleotide and deduced amino acid sequences of the attenuated hog cholera vaccine strain GPE- and the wild-type parental strain ALD, Arch. Virol., 140, 1385, 10.1007/BF01322665 Kosmidou, 1995, Differentiation of classical swine fever virus (CSFV) strains using monoclonal antibodies against structural glycoproteins, Vet. Microbiol., 47, 111, 10.1016/0378-1135(95)00054-E Lowings, 1994, Classical swine fever: genetic detection and analysis of differences between isolates, J. Gen. Virol., 75, 3461, 10.1099/0022-1317-75-12-3461 Lowings, 1996, Classical swine fever diversity and evolution, J. Gen. Virol., 77, 1311, 10.1099/0022-1317-77-6-1311 Lowings, 1999, Classical swine fever in Sardinia: epidemiology of recent outbreaks, Epidemiol. Infect., 122, 553, 10.1017/S0950268899002484 Meyers, 1989, Molecular cloning and nucleotide sequence of the complete genome of hog cholera virus, Virology, 171, 555, 10.1016/0042-6822(89)90625-9 Meyers, 1996, Molecular characterisation of pestiviruses, Adv. Virus Res., 47, 53, 10.1016/S0065-3527(08)60734-4 Moormann, 1990, Molecular cloning and nucleotide sequence of hog cholera virus strain Brescia and mapping of the genomic region encoding envelope protein E1, Virology, 177, 184, 10.1016/0042-6822(90)90472-4 Moormann, 1996, Infectious RNA transcribed from an engineered full-length cDNA template of the genome of a pestivirus, J. Virol., 70, 763, 10.1128/JVI.70.2.763-770.1996 Paton, 1995, Pestivirus diversity (review), J. Comp. Pathol., 112, 215, 10.1016/S0021-9975(05)80076-3 Page, 1996, TREEVIEW: an application to display phylogenetic trees on personal computers, Comput. Appl. Biosci., 12, 357 Parchariyanon, S., Damrongwatanapokin, S., Inui, K., Lowings, P., Paton, D., Pinyochon, W., 1998. Different genetic spectrum of classical swine fever virus in Thailand. Proceedings of the 15th IPUS Congress, Birmingham, England, 5–9 July 1998, p. 358. Ruggli, 1996, Nucleotide sequence of classical swine fever virus strain Alfort/187 and transcription of infectious RNA from stably cloned full-length cDNA, J. Virol., 70, 3478, 10.1128/JVI.70.6.3478-3487.1996 Sakoda, 1999, Genetic heterogeneity of porcine and ruminant viruses mainly isolated in Japan, Vet. Microbiol., 65, 75, 10.1016/S0378-1135(98)00284-3 Simmonds, 1996, Evolutionary analysis of hepatitis C virus found in south-east Asia: comparison with classifications based upon sequence similarity, J. Gen. Virol., 77, 3013, 10.1099/0022-1317-77-12-3013 Stadejek, 1996, Comparative sequence analysis of the 5’-noncoding region of classical swine fever virus strains from Europe, Asia, and America, Arch. Virol., 141, 771, 10.1007/BF01718335 Stadejek, 1997, Genetic heterogeneity of classical swine fever virus in central Europe, Virus Res., 52, 195, 10.1016/S0168-1702(97)00118-4 Strimmer, 1996, Quartet puzzling: a quartet maximum likelihood method for reconstructing tree toplogies, Mol. Biol. E, 13, 964, 10.1093/oxfordjournals.molbev.a025664 Strimmer, 1997, Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment, PNAS (USA), 94, 6815, 10.1073/pnas.94.13.6815 Thompson, 1994, Clustal W: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position specific gap penalties and weight matrix choice, Nucleic Acids Res., 22, 4673, 10.1093/nar/22.22.4673 Vanderhallen, H., Koenen, F., 1997. Molecular characterisation of classical swine fever virus isolates collected in Belgium since 1988. In Report on Annual Meeting of National Swine Fever Laboratories, Vienna, Austria, 16–17, June 1997. Published by the Commission of the European Communities, Directorate General VI/B/II.2, VI/7888/97, pp 29–32. Vanderhallen, H., Mittelholzer, C., Hofmann, M.A., Koenen, F. 1999 Classical swine fever virus is genetically stable in vitro and in vivo. Arch. Virol., 144, 1669–1677. Vilcek, 1996, Genetic variability of classical swine fever virus, Virus Res., 43, 137, 10.1016/0168-1702(96)01326-3 Vilcek, 1997, Genetic analysis of classical swine fever virus isolates from a small geographic area, Dtsch. Tierarztl. Wschr., 104, 9 Vilcek, 1997, Organization and diversity of the 3’-noncoding region of classical swine fever genome, Virus Genes, 15, 181, 10.1023/A:1007971110065 Vilcek, 1998, Application of genetic methods to study the relationship between classical swine fever virus outbreaks, Res. Vet. Sci., 65, 89, 10.1016/S0034-5288(98)90035-2 Vilcek, 1999, Genetic analysis of pestiviruses at the 3’end of the genome, Virus Genes, 18, 107, 10.1023/A:1008000231604 Widjojoatmodjo, 1999, Comparative sequence analysis of classical swine fever virus isolates from the epizootic in the Netherlands in 1997–1998, Vet. Microbiol., 66, 291, 10.1016/S0378-1135(99)00017-6