FASconCAT: Convenient handling of data matrices
Tài liệu tham khảo
Brady, 2006, Evaluating alternative hypotheses for the early evolution and diversification of ants, Proc. Natl. Acad. Sci. USA, 103, 18172, 10.1073/pnas.0605858103
Dinapoli, 2010, The long way to diversity–Phylogeny and evolution of the Heterobranchia (Mollusca:Gastropoda), Mol. Phylogenet. Evol., 55, 60, 10.1016/j.ympev.2009.09.019
Dunn, 2008, Broad phylogenomic sampling improves resolution of the animal tree of life, Nature, 452, 745, 10.1038/nature06614
Felsenstein, 1989, PHYLIP – phylogeny inference package (version 3.2), Cladistics, 5, 164
Gowri-Shankar, 2006
Higgins, 1988, CLUSTAL: a package for performing multiple sequence alignment on a microcomputer, Gene, 73, 237, 10.1016/0378-1119(88)90330-7
Letsch, 2009, Simultaneous alignment and folding of 28S rRNA sequences uncovers phylogenetic signal in structure variation, Mol. Phylogenet. Evol., 53, 758, 10.1016/j.ympev.2009.07.033
Maddison, 1997, NEXUS: an extensible file format for systematic information, Syst. Biol., 46, 590, 10.1093/sysbio/46.4.590
Moreau, 2006, Phylogeny of the ants: diversification in the age of angiosperms, Science, 312, 101, 10.1126/science.1124891
Pearson, 1988, Improved tools for biological sequence comparison, Biochemistry, 85, 2444
Philippe, 2009, Phylogenomics revives traditional views on deep animal relationships, Curr. Biol., 19, 706, 10.1016/j.cub.2009.02.052
Pina-Martins, 2008, CONCATENATOR: sequence data matrices handling made easy, Mol. Ecol. Resour., 8, 1254, 10.1111/j.1755-0998.2008.02164.x
Ronquist, 2003, MrBayes 3: Bayesian phylogenetic inference under mixed models, Bioinformatics, 19, 1572, 10.1093/bioinformatics/btg180
Simon, 2009, A phylogenomic approach to resolve the basal pterygote divergence, Mol. Biol. Evol., 26, 2719, 10.1093/molbev/msp191
Stamatakis, 2006, RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models, Bioinformatics, 22, 2688, 10.1093/bioinformatics/btl446
Stocsits, 2009, Accurate and efficient reconstruction of deep phylogenies from structured RNAs, Nucleic Acids Res., 37, 6184, 10.1093/nar/gkp600
Swofford, 2003
von Reumont, 2009, Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships, BMC Evol. Biol., 9, 119, 10.1186/1471-2148-9-119