A simple sediment process description suitable for 3D-ecosystem modelling — Development and testing in the Gulf of Finland

Alenius, 1998, The physical oceanography of the Gulf of Finland: a review, Boreal Environ. Res., 3, 97

Anonymous, 1998

Ærteberg, 2001, Eutrophication in Europe's coastal waters, vol. 7, 1

Autio, 1992, Temperature regulation of brackish water bacterioplankton, Arch. Hydrobiol. Beih. Ergebn. Limnol., 37, 253

Balls, 1994, Nutrient inputs to estuaries from nine Scottish east coast rivers: influence of estuarine processes on inputs to the North Sea, Est. Coastal Shelf Sci., 39, 329, 10.1006/ecss.1994.1068

Balzer, 1984, Organic matter degradation and biogenic element cycling in a nearshore sediment (Kiel Bight), Limnol. Oceanogr., 29, 1231, 10.4319/lo.1984.29.6.1231

Bender, 1984, Fate of organic carbon reaching the deep sea floor: a status report, Geochim. Cosmochim. Acta, 48, 977, 10.1016/0016-7037(84)90189-3

Berner, 1974, Kinetic models for the early diagenesis of nitrogen, sulfur, phosphorus, and silicon in anoxic marine sediments, 427

Billen, 1982, Modelling the processes of organic matter degradation and nutrient recycling in sedimentary systems

Conley, 1995, Biogeochemistry of N, P, and Si in Baltic Sea sediments: response to a simulated deposition of a spring diatom bloom, Mar. Ecol. Prog. Ser., 122, 265, 10.3354/meps122265

Conley, 2002, Hypoxia in the Baltic Sea and basin scale changes in phosphorus biogeochemistry, Environ. Sci. Technol., 36, 5315, 10.1021/es025763w

Dalsgaard, 2002, Factors controlling anaerobic ammonium oxidation with nitrite in marine sediments, Appl. Environ. Microbiol., 68, 3802, 10.1128/AEM.68.8.3802-3808.2002

Enoksson, 1993, Nutrient recycling by coastal sediments: effects of added algal material, Mar. Ecol. Prog. Ser., 92, 245, 10.3354/meps092245

Frisk, 1982, An oxygen model for Lake Haukivesi, Hydrobiologia, 86, 133, 10.1007/BF00005800

Froelich, 1988, Kinetic control of dissolved phosphate in natural rivers and estuaries: a primer on the phosphate buffer mechanism, Limnol. Oceanogr., 33, 649

Froelich, 1979, Early oxidation of organic matter in pelagic sediments of the eastern equatorial Atlantic: suboxic diagenesis, Geochim. Cosmochim. Acta, 43, 1075, 10.1016/0016-7037(79)90095-4

Gunnars, 1997, Phosphate exchange across the sediment–water interface when shifting from anoxic to oxic conditions — an experimental comparison of freshwater and brackish-marine systems, Biogeochemistry, 37, 203, 10.1023/A:1005744610602

Gunnars, 2002, Formation of Fe(III) oxyhydroxide colloids in freshwater and brackish seawater, with incorporation of phosphate and calcium, Geochim. Cosmochim. Acta, 66, 745, 10.1016/S0016-7037(01)00818-3

Hallberg, 1972, Method for studying geochemistry of sediment–water interface, Ambio, 1, 71

Heiskanen, 1994, Sedimentation of vernal and late summer phytoplankton communities in the coastal Baltic Sea, Arch. Hydrobiol., 131, 175, 10.1127/archiv-hydrobiol/131/1994/175

Heiskanen, 1999, Sedimentation and particulate nutrient dynamics along a coastal gradient from a fjord-like bay to the open sea, Hydrobiologia, 393, 127, 10.1023/A:1003539230715

HELCOM, 2002, Fourth periodic assessment of the state of the marine environment of the Baltic Sea 1994–1998, Baltic Sea Environ. Proc., 82A, 1

Huttula, 1992, Modelling resuspension and settling in lakes using a one dimensional vertical model, Aqua Fenn., 22, 23

Jensen, 1995, Phosphorus cycling in a coastal marine sediment, Aarhus Bay, Denmark, Limnol. Oceanogr., 40, 908, 10.4319/lo.1995.40.5.0908

Kahru, 2000, Cyanobacteria blooms in the Gulf of Finland triggered by saltwater inflow into the Baltic Sea, Mar. Ecol. Prog. Ser., 207, 13, 10.3354/meps207013

Kiirikki, 2001, Evaluating the effects of nutrient load reductions on the biomass of toxic nitrogen-fixing cyanobacteria in the Gulf of Finland, the Baltic Sea, Boreal Environ. Res., 6, 131

Kiirikki, 2003, Cost effective water protection in the Gulf of Finland — focus on St. Petersburg, Finn. Environ., 632, 1

Koponen, 1992, Modelling dynamics of large sea area, Publ. Water Environ. Res. Inst., 7, 1

Kristensen, 1995, Aerobic and anaerobic decomposition of organic matter in marine sediment: which is fastest?, Limnol. Oceanogr., 40, 1430, 10.4319/lo.1995.40.8.1430

Kristensen, 2000, Sulfur cycling of intertidal Wadden Sea sediments (Koningshafen, Island Sylt, Germany): sulfate reduction and sulfur gas emission, J. Sea Res., 43, 93, 10.1016/S1385-1101(00)00007-1

Lehtoranta, 1998, Net sedimentation and sediment–water nutrient fluxes in the eastern Gulf of Finland (Baltic Sea), Vie Milieu, 48, 341

Lehtoranta, 2003, Dynamics of sediment phosphorus in the brackish Gulf of Finland, Monogr. Boreal Environ. Res., 24, 1

Lehtoranta, 2003, Dissolved iron:phosphate ratio as an indicator of phosphate release to oxic water of the inner and outer coastal Baltic Sea, Hydrobiologia, 492, 68, 10.1023/A:1024822013580

Lehtoranta, 1997, Sediment accumulation of nutrients (N, P) in the eastern Gulf of Finland (Baltic Sea), Water Air Soil Pollut., 99, 477, 10.1007/BF02406887

Lovley, 1991, Dissimilatory Fe(III) and Mn(IV) reduction, Microbiol. Rev., 55, 259, 10.1128/mr.55.2.259-287.1991

Marvin-DiPasquale, 1998, Benthic sulfate reduction along Chesapeake Bay central channel. I. Spatial trends and controls, Mar. Ecol. Prog. Ser., 168, 213, 10.3354/meps168213

Neumann, 2000, Towards a 3D ecosystem model of the Baltic Sea, J. Mar. Syst., 25, 405, 10.1016/S0924-7963(00)00030-0

Nielsen, 1992, Denitrification in sediment determined from nitrogen isotope pairing, FEMS Microbiol. Ecol., 86, 357, 10.1111/j.1574-6968.1992.tb04828.x

Nixon, 1995, Coastal marine eutrophication: a definition, social causes and future concerns, Ophelia, 41, 199, 10.1080/00785236.1995.10422044

Pett, 1989, Kinetics of microbial mineralization of organic carbon from detrital Skelatonema costatum cells, Mar. Ecol. Prog. Ser., 52, 123, 10.3354/meps052123

Pitkänen, 1995, Nitrogen and phosphorus as production limiting factors in the estuarine waters of the eastern Gulf of Finland, Mar. Ecol. Prog. Ser., 129, 283, 10.3354/meps129283

Pitkänen, 2001, Internal nutrient fluxes counteract decreases in external load: the case of the estuarial Gulf of Finland, Ambio, 30, 195, 10.1579/0044-7447-30.4.195

Pitkänen, 2003, Benthic release of phosphorus and its relation to environmental conditions in the early 2000s in the estuarial Gulf of Finland, Baltic Sea, Proc. Est. Acad. Sci., Biol. Ecol., 52, 173

Prastka, 1998, Has the role of estuaries as sources or sinks of dissolved inorganic phosphorus changed over time? Results of a Kd study, Mar. Pollut. Bull., 36, 718, 10.1016/S0025-326X(98)00052-6

Roden, 1997, Phosphate mobilization in iron-rich anaerobic sediments: microbial Fe(III) oxide reduction versus iron-sulfide formation, Arch. Hydrobiol., 139, 347, 10.1127/archiv-hydrobiol/139/1997/347

Rozan, 2002, Iron–sulfur–phosphorus cycling in the sediments of a shallow coastal bay: implications for sediment nutrient release and benthic macroalgal blooms, Limnol. Oceanogr., 47, 1346, 10.4319/lo.2002.47.5.1346

Rysgaard, 2004, Denitrification and anammox activity in Arctic marine sediments, Limnol. Oceanogr., 49, 1493, 10.4319/lo.2004.49.5.1493

Savchuk, 1999, Modelling regional and large-scale response of Baltic Sea ecosystem to nutrient load reductions, Hydrobiologia, 393, 35, 10.1023/A:1003529531198

Seitzinger, 1988, Denitrification in freshwater and coastal marine ecosystems: ecological and geo-chemical significance, Limnol. Oceanogr., 33, 702, 10.4319/lo.1988.33.4_part_2.0702

Sokolov, 1997, The data assimilation system for data analysis in the Baltic Sea, Syst. Ecol. Contr., Stockh. Univ., 3, 1

Tengberg, 2003, Resuspension and its effects on organic carbon recycling and nutrient exchange in coastal sediments: in situ measurements using new experimental technology, J. Exp. Mar. Biol. Ecol., 285–286, 119, 10.1016/S0022-0981(02)00523-3

Thamdrup, 2002, Production of N2 through anaerobic ammonium oxidation coupled to nitrate reduction in marine sediments, Appl. Environ. Microbiol., 68, 1312, 10.1128/AEM.68.3.1312-1318.2002

Trimmer, 2003, Anaerobic ammonium oxidation measured in sediments along the Thames Estuary, United Kingdom, Appl. Environ. Microbiol., 69, 6447, 10.1128/AEM.69.11.6447-6454.2003

Tuominen, 1998, Spatial and temporal variability of denitrification in the sediments of the northern Baltic Proper, Mar. Ecol. Prog. Ser., 172, 13, 10.3354/meps172013

Tuominen, 1999, Nutrient fluxes, porewater profiles and denitrification in sediment influenced by algal sedimentation and bioturbation by Monoporeia affinis, Estuarine, Coast. Shelf Sci., 49, 83, 10.1006/ecss.1999.0492

Tyrrell, 1999, The relative influence of nitrogen and phosphorus on the oceanic primary production, Nature, 400, 525, 10.1038/22941

Virtanen, 1986, Three-dimensional water-quality-transport model compared with field observations, Ecol. Model., 31, 185, 10.1016/0304-3800(86)90063-3