Differential evidence of natural selection on two leading sporozoite stage malaria vaccine candidate antigens
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Alloueche, 2003, Protective efficacy of the RTS,S/AS02 Plasmodium falciparum malaria vaccine is not strain specific, Am. J. Trop. Med. Hyg., 68, 97, 10.4269/ajtmh.2003.68.97
Alonso, 2005, Duration of protection with RTS,S/AS02A malaria vaccine in prevention of Plasmodium falciparum disease in Mozambican children: single-blind extended follow-up of a randomised controlled trial, Lancet, 366, 2012, 10.1016/S0140-6736(05)67669-6
Alonso, 2004, Efficacy of the RTS,S/AS02A vaccine against Plasmodium falciparum infection and disease in young African children: randomised controlled trial, Lancet, 364, 1411, 10.1016/S0140-6736(04)17223-1
Anderson, 2000, Microsatellites reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum, Mol. Biol. Evol., 17, 1467, 10.1093/oxfordjournals.molbev.a026247
Bojang, 2001, Efficacy of RTS,S/AS02 malaria vaccine against Plasmodium falciparum infection in semi-immune adult men in The Gambia: a randomised trial, Lancet, 358, 1927, 10.1016/S0140-6736(01)06957-4
Calvo-Calle, 2005, Human CD4+ T cells induced by synthetic peptide malaria vaccine are comparable to cells elicited by attenuated Plasmodium falciparum sporozoites, J. Immunol., 175, 7575, 10.4049/jimmunol.175.11.7575
Conway, 2001, Extreme geographical fixation of variation in the Plasmodium falciparum gamete surface protein gene Pfs48/45 compared with microsatellite loci, Mol. Biochem. Parasitol., 115, 145, 10.1016/S0166-6851(01)00278-X
Conway, 2002, Measuring immune selection, Parasitology, 125, S3, 10.1017/S0031182002002214
Enosse, 2006, RTS,S/ASO2A malaria vaccine does not induce parasite CSP T cell epitope selection and reduces multiplicity of infection, PLoS Clin. Trials, 1, e5, 10.1371/journal.pctr.0010005
Escalante, 1998, Genetic polymorphism and natural selection in the malaria parasite Plasmodium falciparum, Genetics, 149, 189, 10.1093/genetics/149.1.189
Flanagan, 2003, Ex vivo interferon-gamma immune response to thrombospondin-related adhesive protein in coastal Kenyans: longevity and risk of Plasmodium falciparum infection, Am. J. Trop. Med. Hyg., 68, 421, 10.4269/ajtmh.2003.68.421
Flanagan, 1999, Broadly distributed T cell reactivity, with no immunodominant loci, to the pre-erythrocytic antigen thrombospondin-related adhesive protein of Plasmodium falciparum in West Africans, Eur. J. Immunol., 29, 1943, 10.1002/(SICI)1521-4141(199906)29:06<1943::AID-IMMU1943>3.0.CO;2-1
Flanagan, 2006, Cellular reactivity to the P. falciparum protein trap in adult kenyans: novel epitopes, complex cytokine patterns, and the impact of natural antigenic variation, Am. J. Trop. Med. Hyg., 74, 367, 10.4269/ajtmh.2006.74.367
Forsdyke, 2002, Selective pressures that decrease synonymous mutations in Plasmodium falciparum, Trends Parasitol., 18, 411, 10.1016/S1471-4922(02)02342-5
Frevert, 1993, Malaria circumsporozoite protein binds to heparan sulfate proteoglycans associated with the surface membrane of hepatocytes, J. Exp. Med., 177, 1287, 10.1084/jem.177.5.1287
Fu, 1993, Statistical tests of neutrality of mutations, Genetics, 133, 693, 10.1093/genetics/133.3.693
Genton, 2002, A recombinant blood-stage malaria vaccine reduces Plasmodium falciparum density and exerts selective pressure on parasite populations in a Phase 1-2b trial in Papua New Guinea, J. Infect. Dis., 185, 820, 10.1086/339342
Gilbert, 1998, Association of malaria parasite population structure, HLA, and immunological antagonism, Science, 279, 1173, 10.1126/science.279.5354.1173
Good, 1988, Human T-cell recognition of the circumsporozoite protein of Plasmodium falciparum: immunodominant T-cell domains map to the polymorphic regions of the molecule, Proc. Natl. Acad. Sci. USA, 85, 1199, 10.1073/pnas.85.4.1199
Goudet, J., 1995. FSTAT (version 1.2): a computer programme to calculate F-statistics. J. Hered. 86, 485–486.
Hill, 2006, Pre-erythrocytic malaria vaccines: towards greater efficacy, Nat. Rev. Immunol., 6, 21, 10.1038/nri1746
Hudson, 1987, Estimating the recombination parameter of a finite population model without selection, Genet. Res., 50, 245, 10.1017/S0016672300023776
Hughes, 1991, Circumsporozoite protein genes of malaria parasites (Plasmodium spp.): evidence for positive selection on immunogenic regions, Genetics, 127, 345, 10.1093/genetics/127.2.345
Jongwutiwes, 1998, Variation in the thrombospondin-related adhesive protein (TRAP) gene of Plasmodium falciparum from Thai field isolates, Mol. Biochem. Parasitol., 92, 349, 10.1016/S0166-6851(98)00004-8
Jongwutiwes, 1994, Allelic variation in the circumsporozoite protein of Plasmodium falciparum from Thai field isolates, Am. J. Trop. Med. Hyg., 51, 659, 10.4269/ajtmh.1994.51.659
Joy, 2003, Early origin and recent expansion of Plasmodium falciparum, Science, 300, 318, 10.1126/science.1081449
Kappe, 1999, Conservation of a gliding motility and cell invasion machinery in Apicomplexan parasites, J. Cell. Biol., 147, 937, 10.1083/jcb.147.5.937
Kumkhaek, 2005, Are extensive T cell epitope polymorphisms in the Plasmodium falciparum circumsporozoite antigen, a leading sporozoite vaccine candidate, selected by immune pressure?, J. Immunol., 175, 3935, 10.4049/jimmunol.175.6.3935
Lee, 2006, Dimorphic Plasmodium falciparum merozoite surface protein-1 epitopes turn off memory T cells and interfere with T cell priming, Eur. J. Immunol., 36, 1168, 10.1002/eji.200526010
McConkey, 2003, Enhanced T-cell immunogenicity of plasmid DNA vaccines boosted by recombinant modified vaccinia virus Ankara in humans, Nat. Med., 9, 729, 10.1038/nm881
McDonald, 1991, Adaptive protein evolution at the Adh locus in Drosophila, Nature, 351, 652, 10.1038/351652a0
Moorthy, 2004, Phase 1 evaluation of 3 highly immunogenic prime-boost regimens, including a 12-month reboosting vaccination, for malaria vaccination in Gambian men, J. Infect. Dis., 189, 2213, 10.1086/421118
Moorthy, 2004, A randomised, double-blind, controlled vaccine efficacy trial of DNA/MVA ME-TRAP against malaria infection in Gambian adults, PLoS Med., 1, 10.1371/journal.pmed.0010033
Moreno, 1993, CD4+ T cell clones obtained from Plasmodium falciparum sporozoite-immunized volunteers recognise polymorphic sequences of the circumsporozoite protein, J. Immunol., 151, 489, 10.4049/jimmunol.151.1.489
Polley, 2003, Allele frequency-based analyses robustly map sequence sites under balancing selection in a malaria vaccine candidate antigen, Genetics, 165, 555, 10.1093/genetics/165.2.555
Putaporntip, 2001, Diversity in the thrombospondin-related adhesive protein gene (TRAP) of Plasmodium vivax, Gene, 268, 97, 10.1016/S0378-1119(01)00425-5
Rathore, 2003, Molecular mechanism of host specificity in Plasmodium falciparum infection: role of circumsporozoite protein, J. Biol. Chem., 278, 40905, 10.1074/jbc.M306250200
Rich, 2000, Population structure and recent evolution of Plasmodium falciparum, Proc. Natl. Acad. Sci. USA, 97, 6994, 10.1073/pnas.97.13.6994
Rozas, 2003, DnaSP, DNA polymorphism analyses by the coalescent and other methods, Bioinformatics, 19, 2496, 10.1093/bioinformatics/btg359
Scarselli, 1993, Analysis of the human antibody response to thrombospondin-related anonymous protein of Plasmodium falciparum, Infect. Immun., 61, 3490, 10.1128/IAI.61.8.3490-3495.1993
Sultan, 1997, TRAP is necessary for gliding motility and infectivity of Plasmodium sporozoites, Cell, 90, 511, 10.1016/S0092-8674(00)80511-5
Sutherland, 2003, The addition of artesunate to chloroquine for treatment of Plasmodium falciparum malaria in Gambian children delays, but does not prevent treatment failure, Am. J. Trop. Med. Hyg., 69, 19, 10.4269/ajtmh.2003.69.19
Tajima, 1989, Statistical method for testing the neutral mutation hypothesis by DNA polymorphism, Genetics, 123, 585, 10.1093/genetics/123.3.585