Reaction Mechanism Generator: Automatic construction of chemical kinetic mechanisms

Computer Physics Communications - Tập 203 - Trang 212-225 - 2016
Connie W. Gao1, Joshua W. Allen1, William H. Green1, Richard H. West2
1Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, United States
2Department of Chemical Engineering, Northeastern University, Boston, MA 02115, United States

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Battin-Leclerc, 2011, Towards cleaner combustion engines through groundbreaking detailed chemical kinetic models, Chem. Soc. Rev., 40, 4762, 10.1039/c0cs00207k

Broadbelt, 2005, Lexicography of kinetic modeling of complex reaction networks, AIChE J., 51, 2112, 10.1002/aic.10599

Vinu, 2012, Unraveling reaction pathways and specifying reaction kinetics for complex systems, Annu. Rev. Chem. Biomol. Eng., 3, 29, 10.1146/annurev-chembioeng-062011-081108

Blurock, 2013, Automatic generation of detailed mechanisms, 59, 10.1007/978-1-4471-5307-8_3

Van~de Vijver, 2015, Automatic mechanism and kinetic model generation for gas- and solution-phase processes: A perspective on best practices, recent advances, and future challenges, Int. J. Chem. Kin., 47, 199, 10.1002/kin.20902

Song, 2004

Green, 2001, Computer construction of detailed chemical kinetic models for gas-phase reactors, Ind. Eng. Chem. Res., 40, 5362, 10.1021/ie001088s

Grenda, 2003, Application of computational kinetic mechanism generation to model the autocatalytic pyrolysis of methane, Ind. Eng. Chem. Res., 42, 1000, 10.1021/ie020581w

Harper, 2011, Comprehensive reaction mechanism for n-butanol pyrolysis and combustion, Combust. Flame, 158, 16, 10.1016/j.combustflame.2010.06.002

Allen, 2014, A coordinated investigation of the combustion chemistry of diisopropyl ketone, a prototype for biofuels produced by endophytic fungi, Combust. Flame, 161, 711, 10.1016/j.combustflame.2013.10.019

Magoon, 2012, Detailed chemical kinetic modeling of JP-10 (exo-tetrahydrodicyclopentadiene) high-temperature oxidation: Exploring the role of biradical species in initial decomposition steps, Int. J. Chem. Kin., 44, 179, 10.1002/kin.20702

Petway, 2007, Measurements and automated mechanism generation modeling of oh production in photolytically initiated oxidation of the neopentyl radical, J. Phys. Chem. A, 111, 3891, 10.1021/jp0668549

Allen, 2013

Tomlin, 1997, Mathematical tools for the construction, investigation and reduction of combustion mechanisms, vol. 35, 293

Benson, 1958, Additivity rules for the estimation of molecular properties. thermodynamic properties, J. Chem. Phys., 29, 546, 10.1063/1.1744539

Benson, 1968

Magoon, 2013, Design and implementation of a next-generation software interface for on-the-fly quantum and force field calculations in automated reaction mechanism generation, Comput. Chem. Eng., 52, 35, 10.1016/j.compchemeng.2012.11.009

Susnow, 1997, Rate-based construction of kinetic models for complex systems, J. Phys. Chem. A, 5639, 3731, 10.1021/jp9637690

Cordella, 2004, A (sub)graph isomorphism algorithm for matching large graphs, IEEE Trans. Pattern Anal. Mach. Intell., 26, 1367, 10.1109/TPAMI.2004.75

Lay, 1995, Hydrogen atom bond increments for calculation of thermodynamic properties of hydrocarbon radical species, J. Phys. Chem., 99, 14514, 10.1021/j100039a045

G. Landrum, RDKit, http://rdkit.org.

Allen, 2012, Automatic estimation of pressure-dependent rate coefficients, Phys. Chem. Chem. Phys., 14, 1131, 10.1039/C1CP22765C

Chang, 2000, Kinetic analysis of complex chemical activation and unimolecular dissociation reactions using QRRK theory and the modified strong collision approximation, Z. Phys. Chem., 214, 1533, 10.1524/zpch.2000.214.11.1533

Green, 2007, Steady-state master equation methods, Phys. Chem. Chem. Phys., 9, 4275, 10.1039/b704519k

Miller, 2006, Master equation methods in gas phase chemical kinetics, J. Phys. Chem. A, 110, 10528, 10.1021/jp062693x

Jalan, 2013, An extensible framework for capturing solvent effects in computer generated kinetic models, J. Phys. Chem. B, 117, 2955, 10.1021/jp310824h

Kamlet, 1983, Linear solvation energy relationships. 23. a comprehensive collection of the solvatochromic parameters, π, α, and β, and some methods for simplifying the generalized solvatochromic equation, J. Org. Chem., 48, 2877, 10.1021/jo00165a018

Taft, 1985, Linear solvation energy relations, J. Solut. Chem., 14, 153, 10.1007/BF00647061

Platts, 1999, Estimation of molecular linear free energy relation descriptors using a group contribution approach, J. Chem. Inf. Comput. Sci., 39, 835, 10.1021/ci980339t

Cramer, 1999, Implicit solvation models: equilibria, structure, spectra, and dynamics, Chem. Rev., 99, 2161, 10.1021/cr960149m

Mintz, 2007, Enthalpy of solvation correlations for gaseous solutes dissolved in toluene and carbon tetrachloride based on the abraham model, J. Solut. Chem., 36, 947, 10.1007/s10953-007-9163-0

Mintz, 2007, Enthalpy of solvation correlations for gaseous solutes dissolved in benzene and in alkane solvents based on the abraham model, QSAR Comb. Sci., 26, 881, 10.1002/qsar.200630152

Mintz, 2008, Enthalpy of solvation correlations for gaseous solutes dissolved in alcohol solvents based on the abraham model, QSAR Comb. Sci., 27, 627, 10.1002/qsar.200730128

Rice, 1985

Collins, 1949, Diffusion-controlled reaction rates, J. Colloid Sci., 4, 425, 10.1016/0095-8522(49)90023-9

Abraham, 1987, The use of characteristic volumes to measure cavity terms in reversed phase liquid chromatography, Chromatographia, 23, 243, 10.1007/BF02311772

Harper, 2011

G.P. Smith, D.M. Golden, M. Frenklach, N.W. Moriarty, B. Eiteneer, M. Goldenberg, R.K.H.C.T. Bowman, S. Song, J.W.C. Gardiner, V.V. Lissianski, Z. Qin, GRI-Mech 3.0, 2011. http://www.me.berkeley.edu/gri_mech/.

Tee, 1966, Molecular parameters for normal fluids. lennard-jones 12-6 potential, Ind. Eng. Chem. Res., 5, 356

Joback, 1984

Joback, 1987, Estimation of pure-component properties from group-contributions, Chem. Eng. Comm., 57, 233, 10.1080/00986448708960487

L. Petzold, S. Li, DASPK3.1, http://www.cs.ucsb.edu/~cse/software.html.

S. Sharma, M.R. Harper, W.H. Green, CanTherm v1.0, http://cantherm.sourceforge.net/.

Yuan, 2011, Pyrolysis of n-heptane: Experimental and theoretical study, J. Phys. Chem. A, 115, 1593, 10.1021/jp109640z

Reaction Design, CHEMKIN-PRO 15131, San Diego, 2013.

Mehl, 2011, Kinetic modeling of gasoline surrogate components and mixtures under engine conditions, Proc. Combust. Inst., 33, 193, 10.1016/j.proci.2010.05.027

Behnel, 2011, Cython: The best of both worlds, Comput. Sci. Eng., 13, 31, 10.1109/MCSE.2010.118

R. Bradshaw, S. Behnel, D.S. Seljebotn, G. Ewing, et al. The Cython compiler, http://cython.org/.