Abbruscato P et al (2012) OsWRKY22, a monocot WRKY gene, plays a role in the resistance response to blast. Mol Plant Pathol 13:828–841. https://doi.org/10.1111/j.1364-3703.2012.00795.x
Bakshi M, Oelmüller R (2014) WRKY transcription factors: Jack of many trades in plants. Plant Signal Behav 9:e27700. https://doi.org/10.4161/psb.27700
Brunings AM, Gabriel DW (2003) Xanthomonas citri: breaking the surface. Mol Plant Pathol 4:141–157. https://doi.org/10.1046/j.1364-3703.2003.00163.x
Cong L et al (2013) Multiplex genome engineering using CRISPR/Cas systems. Science 339:819–823. https://doi.org/10.1126/science.1231143
Doench JG et al (2016) Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9. Nat Biotechnol 34:184–191. https://doi.org/10.1038/nbt.3437
Donmez D, Simsek O, Izgu T, Kacar YA, Mendi YY (2013) Genetic transformation in citrus. Sci World J 2013:e491207. https://doi.org/10.1155/2013/491207
Dutt M, Barthe G, Irey M, Grosser J (2016) Transgenic citrus expressing an Arabidopsis NPR1 gene exhibit enhanced resistance against Huanglongbing (HLB; Citrus Greening). PLoS ONE 11:e0147657. https://doi.org/10.1371/journal.pone.0147657
Fang DQ, Roose ML (1997) Identification of closely related citrus cultivars with inter-simple sequence repeat markers. Theor Appl Genet 95:408–417. https://doi.org/10.1007/s001220050577
Feng Z et al (2013) Efficient genome editing in plants using a CRISPR/Cas system. Cell Res 23:1229–1232. https://doi.org/10.1038/cr.2013.114
Gong X, Liu J (2013) Genetic transformation and genes for resistance to abiotic and biotic stresses in Citrus and its related genera. Plant Cell Tissue Org Cult 113:137–147
Gottwald TR, Graham JH, Schubert TS (2002) Citrus canker: the pathogen and its impact. Online Plant Health Progress 3(1):15. https://doi.org/10.1094/PHP-2002-0812-01-RV
Hartung F, Schiemann J (2014) Precise plant breeding using new genome editing techniques: opportunities, safety and regulation in the EU. Plant J Cell Mol Biol 78:742–752. https://doi.org/10.1111/tpj.12413
Hsu FC, Chou MY, Chou SJ, Li YR, Peng HP, Shih MC (2013) Submergence confers immunity mediated by the WRKY22 transcription factor in Arabidopsis. Plant Cell 25:2699–2713. https://doi.org/10.1105/tpc.113.114447
Hu Y et al (2014) Lateral organ boundaries 1 is a disease susceptibility gene for citrus bacterial canker disease. Proc Natl Acad Sci USA 111:E521–E529. https://doi.org/10.1073/pnas.1313271111
Jia H, Wang N (2014) Targeted genome editing of sweet orange using Cas9/sgRNA. PLoS One 9:e93806. https://doi.org/10.1371/journal.pone.0093806
Jia H, Orbovic V, Jones JB, Wang N (2016a) Modification of the PthA4 effector binding elements in Type I CsLOB1 promoter using Cas9/sgRNA to produce transgenic Duncan grapefruit alleviating XccDeltapthA4:dCsLOB1.3 infection. Plant Biotechnol J 14:1291–1301. https://doi.org/10.1111/pbi.12495
Jia H, Zhang Y, Orbovic V, Xu J, White F, Jones J, Wang N (2016b) Genome editing of the disease susceptibility gene CsLOB1 in citrus confers resistance to citrus canker. Plant Biotechnol J. https://doi.org/10.1111/pbi.12677
Jia H, Xu J, Orbovic V, Zhang Y, Wang N (2017) Editing citrus genome via SaCas9/sgRNA System. Front Plant Sci 8:2135. https://doi.org/10.3389/fpls.2017.02135
Jiang J, Ma S, Ye N, Jiang M, Cao J, Zhang J (2017) WRKY transcription factors in plant responses to stresses. J Integr Plant Biol 59:86–101. https://doi.org/10.1111/jipb.12513
Kloth KJ et al (2016) AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling. J Exp Bot 67:3383–3396. https://doi.org/10.1093/jxb/erw159
Lei Y, Lu L, Liu HY, Li S, Xing F, Chen LL (2014) CRISPR-P: a web tool for synthetic single-guide RNA design of CRISPR-system in plants. Molecular plant 7:1494–1496. https://doi.org/10.1093/mp/ssu044
Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics (Oxford, England) 25:1754–1760. https://doi.org/10.1093/bioinformatics/btp324
Li D, Shi W, Deng X (2002) Agrobacterium-mediated transformation of embryogenic calluses of Ponkan mandarin and the regeneration of plants containing the chimeric ribonuclease gene. Plant Cell Rep 21:153–156. https://doi.org/10.1007/s00299-002-0492-6
Liang Z et al (2017) Efficient DNA-free genome editing of bread wheat using CRISPR/Cas9 ribonucleoprotein complexes. Nat Commun 8:14261. https://doi.org/10.1038/ncomms14261
Murashige T, Skoog F (1962) A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol Plantarum 15:473–497
Omar AA, Dutt M, Gmitter FG, Grosser JW (2016) Somatic embryogenesis: still a relevant technique in citrus improvement. In: Germana MA, Lambardi M (eds) In vitro embryogenesis in higher plants. Springer, New York, pp 289–327. https://doi.org/10.1007/978-1-4939-3061-6_13
Peng A, Xu L, He Y, Lei T, Yao L, Chen S, Zou X (2015) Efficient production of marker-free transgenic ‘Tarocco’ blood orange (Citrus sinensis Osbeck) with enhanced resistance to citrus canker using a Cre/loxP site-recombination system. Plant Cell Tissue and Organ Culture (PCTOC) 123:1–13. https://doi.org/10.1007/s11240-015-0799-y
Peña L, Pérez RM, Cervera M, Juárez JA, Navarro L (2004) Early events in Agrobacterium-mediated genetic transformation of citrus explants. Ann Bot 94:67–74. https://doi.org/10.1093/aob/mch117
Plüss M et al (2017) Need for speed in accurate whole-genome data analysis: GENALICE MAP challenges BWA/GATK more than PEMapper/PECaller and Isaac. Proc Natl Acad Sci USA 114:E8320–E8322. https://doi.org/10.1073/pnas.1713830114
Rushton PJ, Somssich IE, Ringler P, Shen QJ (2010) WRKY transcription factors. Trends Plant Sci 15:247–258. https://doi.org/10.1016/j.tplants.2010.02.006
Shi Q, Febres VJ, Jones JB, Moore GA (2015) Responsiveness of different citrus genotypes to the Xanthomonas citri ssp. citri-derived pathogen-associated molecular pattern (PAMP) flg22 correlates with resistance to citrus canker. Mol Plant Pathol 16:507–520. https://doi.org/10.1111/mpp.12206
So Young Y, Ken S, Jae Sun M, Seung-Goo L, Suk-Yoon K (2014) The activated SA and JA signaling pathways have an influence on flg22-triggered oxidative burst and callose deposition. PLoS One 9:e88951
Stover E, Driggers R, Richardson ML, Hall DG, Duan YP, Lee RF (2014) Incidence and severity of Asiatic citrus canker on diverse citrus and citrus-related Germplasm in a Florida. Field Plant Hortsci 49:4–9
Straubeta A, Lahaye T (2013) Zinc fingers, TAL effectors, or Cas9-based DNA binding proteins: what's best for targeting desired genome loci? Mol Plant 6:1384–1387. https://doi.org/10.1093/mp/sst075
Ulker B, Somssich IE (2004) WRKY transcription factors: from DNA binding towards biological function. Curr Opin Plant Biol 7:491–498. https://doi.org/10.1016/j.pbi.2004.07.012
Xiang Z, Yanjuan J, Diqiu Y (2011) WRKY22 transcription factor mediates dark-induced leaf senescence in Arabidopsis. Mol Cells 31:303–313
Xie K, Zhang J, Yang Y (2014) Genome-wide prediction of highly specific guide RNA spacers for CRISPR-Cas9-mediated genome editing in model plants and major crops. Mol Plant 7:923–926. https://doi.org/10.1093/mp/ssu009
Xu Q et al (2013) The draft genome of sweet orange (Citrus sinensis). Nat Genet 45:59–66. https://doi.org/10.1038/ng.2472
Zhang XD, Francis MI, Dawson WO, Graham JH, Orbovic V, Triplett EW, Mou ZL (2010) Over-expression of the Arabidopsis NPR1 gene in citrus increases resistance to citrus canker. Eur J Plant Pathol 128:91–100. https://doi.org/10.1007/s10658-010-9633-x
Zhang D, Zhang H, Li T, Chen K, Qiu JL, Gao C (2017a) Perfectly matched 20-nucleotide guide RNA sequences enable robust genome editing using high-fidelity SpCas9 nucleases. Genome Biol 18:191. https://doi.org/10.1186/s13059-017-1325-9
Zhang F, Leblanc C, Irish VF, Jacob Y (2017b) Rapid and efficient CRISPR/Cas9 gene editing in Citrus using the YAO promoter. Plant Cell Rep 36:1883–1887. https://doi.org/10.1007/s00299-017-2202-4
Zhou P et al (2017) Cloning and Expression Analysis of Four Citrus WRKY Genes Responding to Xanthomon asaxonopodis pv. citri. Acta Horticult Sin 44:452–462. https://doi.org/10.16420/j.issn.0513-353x.2016-0577
Zhou J-M, Trifa Y, Silva H, Pontier D, Lam E, Shah J, Klessig DF (2000) NPR1 differentially interacts with members of the TGA/OBF family of transcription factors that bind an element of the PR-1 gene required for induction by Salicylic acid. Mol Plant Microb Interact 13:191–202. https://doi.org/10.1094/MPMI.2000.13.2.191
Zou X et al (2014) Activation of three pathogen-inducible promoters in transgenic citrus (Citrus sinensis Osbeck) after Xanthomonas axonopodis pv. citri infection and wounding. Plant Cell Tissue and Organ Culture (PCTOC) 117:85–98. https://doi.org/10.1007/s11240-013-0423-y
Zou X et al (2016) Transgenic citrus expressing synthesized cecropin B genes in the phloem exhibits decreased susceptibility to Huanglongbing. Plant Mol Biol 93:341–353. https://doi.org/10.1007/s11103-016-0565-5
Zou X, Li D, Luo X, Luo K, Pei Y (2008) An improved procedure for Agrobacterium-mediated transformation of trifoliate orange (Poncirus trifoliata L. Raf.) via indirect organogenesis. Vitro Cell Dev Biol Plant 44:169–177. https://doi.org/10.1007/s11627-008-9106-5