The complete genome sequence of the Atlantic salmon paramyxovirus (ASPV)

Bols, 1994, Development of a cell-line from primary cultures of rainbow-trout, Oncorhyrzchus mykiss (Walbaum), gills, J. Fish Dis., 17, 601, 10.1111/j.1365-2761.1994.tb00258.x Calain, 1993, The rule of 6, a basic feature for efficient replication of Sendai virus defective interfering RNA, J. Virol., 67, 4822, 10.1128/JVI.67.8.4822-4830.1993 Ceroni, 2006, DISULFIND: a disulfide bonding state and cysteine connectivity prediction server, Nucleic Acids Res., 34, W177, 10.1093/nar/gkl266 Chambers, 1990, Heptad repeat sequences are located adjacent to hydrophobic regions in several types of virus fusion glycoproteins, J. Gen. Virol., 71, 3075, 10.1099/0022-1317-71-12-3075 Chang, 2001, Complete nucleotide sequence of avian paramyxovirus type 6 isolated from ducks, J. Gen. Virol., 82, 2157, 10.1099/0022-1317-82-9-2157 Chua, 2002, Full length genome sequence of Tioman virus, a novel paramyxovirus in the genus Rubulavirus isolated from fruit bats in Malaysia, Arch. Virol., 147, 1323, 10.1007/s00705-002-0815-5 de Leeuw, 1999, Complete nucleotide sequence of Newcastle disease virus: evidence for the existence of a new genus within the subfamily Paramyxovirinae, J. Gen. Virol., 80, 131, 10.1099/0022-1317-80-1-131 Devold, 2000, Use of RT–PCR for diagnosis of infectious salmon anaemia virus (ISAV) in carrier sea trout Salmo trutta after experimental infection, Dis. Aquat. Org., 40, 9, 10.3354/dao040009 Essbauer, 2001, Viruses of lower vertebrates, J. Vet. Med. Ser., B Infect. Dis. Vet. Public Health, 48, 403, 10.1046/j.1439-0450.2001.00473.x Fridell, 2004, Phylogenetic position of a paramyxovirus from Atlantic salmon Salmo salar, Dis. Aquat. Org., 59, 11, 10.3354/dao059011 Harcourt, 2000, Molecular characterization of Nipah virus, a newly emergent paramyxovirus, Virology, 271, 334, 10.1006/viro.2000.0340 Harcourt, 2001, Molecular characterization of the polymerase gene and genomic termini of Nipah virus, Virology, 287, 192, 10.1006/viro.2001.1026 Hausmann, 1999, The versatility of paramyxovirus RNA polymerase stuttering, J. Virol., 73, 5568, 10.1128/JVI.73.7.5568-5576.1999 He, 2002, Recovery of paramyxovirus simian virus 5 with a V protein lacking the conserved cysteine-rich domain: the multifunctional V protein blocks both interferon-beta induction and interferon signaling, Virology, 303, 15, 10.1006/viro.2002.1738 Hosaka, 1991, Arg-X-Lys/Arg-Arg motif as a signal for precursor cleavage catalyzed by furin within the constitutive secretory pathway, J. Biol. Chem., 266, 12127, 10.1016/S0021-9258(18)98867-8 Jack, 2005, The complete genome sequence of J virus reveals a unique genome structure in the family Paramyxoviridae, J. Virol., 79, 10690, 10.1128/JVI.79.16.10690-10700.2005 Kamer, 1984, Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial-viruses, Nucleic Acids Res., 12, 7269, 10.1093/nar/12.18.7269 Kennelly, 1991, Consensus sequences as substrate-specificity determinants for protein-kinases and protein phosphatases, J. Biol. Chem., 266, 15555, 10.1016/S0021-9258(18)98436-X Kolakofsky, 1998, Paramyxovirus RNA synthesis and the requirement for hexamer genome length: the rule of six revisited, J. Virol., 72, 891, 10.1128/JVI.72.2.891-899.1998 Kolakofsky, 2005, Paramyxovirus mRNA editing, the ‘rule of six’ and error catastrophe: a hypothesis, J. Gen. Virol., 86, 1869, 10.1099/vir.0.80986-0 Kozak, 1991, Structural features in eukaryotic messenger-RNAs that modulate the initiation of translation, J. Biol. Chem., 266, 19867, 10.1016/S0021-9258(18)54860-2 Kurath, 2004, Complete genome sequence of Fer-de-Lance virus reveals a novel gene in reptilian paramyxoviruses, J. Virol., 78, 2045, 10.1128/JVI.78.4.2045-2056.2004 Kvellestad, 2003, Isolation and partial characterization of a novel paramyxovirus from the gills of diseased seawater-reared Atlantic salmon (Salmo salar L.), J. Gen. Virol., 84, 2179, 10.1099/vir.0.18962-0 Kvellestad, 2005, Atlantic salmon paramyxovirus (ASPV) infection contributes to proliferative gill inflammation (PGI) in seawater-reared Salmo salar, Dis. Aquat. Org., 67, 47, 10.3354/dao067047 Lamb, 2001, Paramyxoviridae: the viruses and their replication, 1305 Lamb, 2005, Family Paramyxoviridae Langedijk, 1997, Sequence and structure alignment of Paramyxoviridae attachment proteins and discovery of enzymatic activity for a morbillivirus hemagglutinin, J. Virol., 71, 6155, 10.1128/JVI.71.8.6155-6167.1997 Li, 2006, Beilong virus, a novel paramyxovirus with the largest genome of non-segmented negative-stranded RNA viruses, Virology, 346, 219, 10.1016/j.virol.2005.10.039 Miller, 2003, Full-length genome sequence of Mossman virus, a novel paramyxovirus isolated from rodents in Australia, Virology, 317, 330, 10.1016/j.virol.2003.08.013 Muller, 2000, Modeling amino acid replacement, J. Comput. Biol., 7, 761, 10.1089/10665270050514918 Myers, 1997, A highly conserved region of the Sendai virus nucleocapsid protein contributes to the NP–NP binding domain, Virology, 229, 322, 10.1006/viro.1996.8429 Page, 1996, TreeView: an application to display phylogenetic trees on personal computers, Comput. Appl. Biosci., 12, 357 Parker, 1991, Targeted gene walking polymerase chain-reaction, Nucleic Acids Res., 19, 3055, 10.1093/nar/19.11.3055 Patterson, 2000, V and C proteins of measles virus function as virulence factors in vivo, Virology, 267, 80, 10.1006/viro.1999.0118 Poch, 1990, Sequence comparison of 5 polymerases (L-proteins) of unsegmented negative-strand RNA viruses – theoretical assignment of functional domains, J. Gen. Virol., 71, 1153, 10.1099/0022-1317-71-5-1153 Poole, 2002, The V proteins of simian virus 5 and other paramyxoviruses inhibit induction of interferon-beta, Virology, 303, 33, 10.1006/viro.2002.1737 Rose, 1998, Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences, Nucleic Acids Res., 26, 1628, 10.1093/nar/26.7.1628 Rose, 2003, CODEHOP (consensus-degenerate hybrid oligonucleotide primer) PCR primer design, Nucleic Acids Res., 31, 3763, 10.1093/nar/gkg524 Schutze, 1995, Complete genomic sequence of the fish rhabdovirus infectious hematopoietic necrosis virus, J. Gen. Virol., 76, 2519, 10.1099/0022-1317-76-10-2519 Springfeld, 2005, Envelope targeting: hemagglutinin attachment specificity rather than fusion protein cleavage-activation restricts Tupaia paramyxovirus tropism, J. Virol., 79, 10155, 10.1128/JVI.79.16.10155-10163.2005 Swofford, 1993, Paup – a computer-program for phylogenetic inference using maximum parsimony, J. Gen. Physiol., 102, A9–A9 Swofford, 1998 Thomas, 1988, 2 Messenger-RNAs that differ by 2 nontemplated nucleotides encode the amino coterminal protein-P and protein-V of the paramyxovirus-Sv5, Cell, 54, 891, 10.1016/S0092-8674(88)91285-8 Tidona, 1999, Isolation and molecular characterization of a novel cytopathogenic paramyxovirus from tree shrews, Virology, 258, 425, 10.1006/viro.1999.9693 Wang, 2000, The exceptionally large genome of Hendra virus: support for creation of a new genus within the family Paramyxoviridae, J. Virol., 74, 9972, 10.1128/JVI.74.21.9972-9979.2000 Wang, 2001, Molecular biology of Hendra and Nipah viruses, Microbes Infect., 3, 279, 10.1016/S1286-4579(01)01381-8 Winton, 1985, Isolation of a new virus from chinook salmon (Onchorhynchus tshawytscha) in Oregon U.S.A., Fish Pathol., 20, 373, 10.3147/jsfp.20.373