Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes
Tài liệu tham khảo
Ahrens, 2012, Brain-wide neuronal dynamics during motor adaptation in zebrafish, Nature, 485, 471, 10.1038/nature11057
Barnes, 2015, Subnetwork-specific homeostatic plasticity in mouse visual cortex in vivo, Neuron, 86, 1290, 10.1016/j.neuron.2015.05.010
Benjamini, 1995, Controlling the false discovery rate: a practical and powerful approach to multiple testing, J. R. Stat. Soc. B, 57, 289
Bepari, 2012, Identification of optogenetically activated striatal medium spiny neurons by Npas4 expression, PLoS ONE, 7, e52783, 10.1371/journal.pone.0052783
Berényi, 2014, Large-scale, high-density (up to 512 channels) recording of local circuits in behaving animals, J. Neurophysiol., 111, 1132, 10.1152/jn.00785.2013
Cui, 2014, Deep brain optical measurements of cell type-specific neural activity in behaving mice, Nat. Protoc., 9, 1213, 10.1038/nprot.2014.080
Denny, 2014, Hippocampal memory traces are differentially modulated by experience, time, and adult neurogenesis, Neuron, 83, 189, 10.1016/j.neuron.2014.05.018
Dulac, 2014, Neural control of maternal and paternal behaviors, Science, 345, 765, 10.1126/science.1253291
Ertürk, 2012, Three-dimensional imaging of solvent-cleared organs using 3DISCO, Nat. Protoc., 7, 1983, 10.1038/nprot.2012.119
Gogolla, 2014, Sensory integration in mouse insular cortex reflects GABA circuit maturation, Neuron, 83, 894, 10.1016/j.neuron.2014.06.033
He, 2012, Distinct sensory requirements for unimodal and cross-modal homeostatic synaptic plasticity, J. Neurosci., 32, 8469, 10.1523/JNEUROSCI.1424-12.2012
Hunt, 1987, Induction of c-fos-like protein in spinal cord neurons following sensory stimulation, Nature, 328, 632, 10.1038/328632a0
Keller, 2015, Visualizing whole-brain activity and development at the single-cell level using light-sheet microscopy, Neuron, 85, 462, 10.1016/j.neuron.2014.12.039
Kim, 2015, Mapping social behavior-induced brain activation at cellular resolution in the mouse, Cell Rep., 10, 292, 10.1016/j.celrep.2014.12.014
Klein, 2010, elastix: a toolbox for intensity-based medical image registration, IEEE Trans. Med. Imaging, 29, 196, 10.1109/TMI.2009.2035616
Lerner, 2015, Intact-brain analyses reveal distinct information carried by SNc dopamine subcircuits, Cell, 162, 635, 10.1016/j.cell.2015.07.014
Lin, 2008, Activity-dependent regulation of inhibitory synapse development by Npas4, Nature, 455, 1198, 10.1038/nature07319
Lovett-Barron, 2014, Dendritic inhibition in the hippocampus supports fear learning, Science, 343, 857, 10.1126/science.1247485
Menegas, 2015, Dopamine neurons projecting to the posterior striatum form an anatomically distinct subclass, eLife, 4, e10032, 10.7554/eLife.10032
Mongeau, 2003, Neural correlates of competing fear behaviors evoked by an innately aversive stimulus, J. Neurosci., 23, 3855, 10.1523/JNEUROSCI.23-09-03855.2003
Peron, 2015, A Cellular Resolution Map of Barrel Cortex Activity during Tactile Behavior, Neuron, 86, 783, 10.1016/j.neuron.2015.03.027
Ragan, 2012, Serial two-photon tomography for automated ex vivo mouse brain imaging, Nat. Methods, 9, 255, 10.1038/nmeth.1854
Renier, 2014, iDISCO: a simple, rapid method to immunolabel large tissue samples for volume imaging, Cell, 159, 896, 10.1016/j.cell.2014.10.010
Richardson, 2015, Clarifying tissue clearing, Cell, 162, 246, 10.1016/j.cell.2015.06.067
Rodgers, 2008, Auditory, somatosensory, and multisensory insular cortex in the rat, Cereb. Cortex, 18, 2941, 10.1093/cercor/bhn054
Roth, 1992, Binding of typical and atypical antipsychotic agents to transiently expressed 5-HT1C receptors, J. Pharmacol. Exp. Ther., 260, 1361
Schwarz, 2015, Fluorescent-protein stabilization and high-resolution imaging of cleared, intact mouse brains, PLoS ONE, 10, e0124650, 10.1371/journal.pone.0124650
Shamonin, 2014, Fast parallel image registration on CPU and GPU for diagnostic classification of Alzheimer’s disease, Front. Neuroinform., 7, 50
Sommer, C., Straehle, C., Köthe, U., and Hamprecht, F.A. (2011). Ilastik: Interactive learning and segmentation toolkit. 8th IEEE International Symposium on Biomedical Imaging (ISBI 2011). Proceedings, 230–233.
Spiegel, 2014, Npas4 regulates excitatory-inhibitory balance within neural circuits through cell-type-specific gene programs, Cell, 157, 1216, 10.1016/j.cell.2014.03.058
Sumner, 2004, Testing the validity of c-fos expression profiling to aid the therapeutic classification of psychoactive drugs, Psychopharmacology (Berl.), 171, 306, 10.1007/s00213-003-1579-7
Susaki, 2014, Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis, Cell, 157, 726, 10.1016/j.cell.2014.03.042
Susaki, 2015, Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging, Nat. Protoc., 10, 1709, 10.1038/nprot.2015.085
Tachikawa, 2013, Behavioral transition from attack to parenting in male mice: a crucial role of the vomeronasal system, J. Neurosci., 33, 5120, 10.1523/JNEUROSCI.2364-12.2013
vom Saal, 1985, Time-contingent change in infanticide and parental behavior induced by ejaculation in male mice, Physiol. Behav., 34, 7, 10.1016/0031-9384(85)90069-1
Wang, 2006, In vivo two-photon imaging reveals a role of arc in enhancing orientation specificity in visual cortex, Cell, 126, 389, 10.1016/j.cell.2006.06.038
Wee, 2015, Whole-brain activity mapping onto a zebrafish brain atlas, Nat. Methods, 12, 1039, 10.1038/nmeth.3581
Wu, 2014, Galanin neurons in the medial preoptic area govern parental behaviour, Nature, 509, 325, 10.1038/nature13307
Yushkevich, 2006, User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliability, Neuroimage, 31, 1116, 10.1016/j.neuroimage.2006.01.015
Zingg, 2014, Neural networks of the mouse neocortex, Cell, 156, 1096, 10.1016/j.cell.2014.02.023