Soil carbon and nitrogen mineralization: Theory and models across scales
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Aber, 1978, Predicting effects of different harvesting regimes on forest floor dynamics in northern hardwoods, Canadian Journal of Forest Research, 8, 306, 10.1139/x78-046
Aber, 1991, Factors controlling nitrogen cycling and nitrogen saturation in northern temperate forest ecosystems, Ecological Applications, 1, 303, 10.2307/1941759
Acutis, 2000, Stochastic use of the LEACHN model to forecast nitrate leaching in different maize cropping systems, European Journal of Agronomy, 13, 191, 10.1016/S1161-0301(00)00074-5
Addiscott, 1987, Computer-simulation of changes in soil mineral nitrogen and crop nitrogen during autumn, winter and spring, Journal of Agricultural Science, 109, 141, 10.1017/S0021859600081089
Ågren, 1990, Theory and model or art and technology in ecology, Ecological Modelling, 50, 213, 10.1016/0304-3800(90)90051-H
Ågren, 1996
Ahuja, 2006, Trans-disciplinary soil physics research critical to synthesis and modeling of agricultural systems, Soil Science Society of America Journal, 70, 311, 10.2136/sssaj2005.0207
Allison, 2005, Cheaters, diffusion and nutrients constrain decomposition by microbial enzymes in spatially structured environments, Ecology Letters, 8, 626, 10.1111/j.1461-0248.2005.00756.x
Andrén, 1997, ICBM: the introductory carbon balance model for exploration of soil carbon balances, Ecological Applications, 7, 1226, 10.1890/1051-0761(1997)007[1226:ITICBM]2.0.CO;2
Andrén, 1987, Barley straw decomposition in the field – a comparison of models, Ecology, 68, 1190, 10.2307/1939203
d'Annunzio, 2008, Decomposition of European beech (Fagus sylvatica) litter: combining quality theory and N-15 labelling experiments, Soil Biology & Biochemistry, 40, 322, 10.1016/j.soilbio.2007.08.011
Arah, 1989, Steady-state denitrification in aggregated soils – a mathematical-model, Journal of Soil Science, 40, 139, 10.1111/j.1365-2389.1989.tb01262.x
Argyris, J., Faust, G., Haase, M., 1994. An Exploration of Chaos. North Holland.
Austin, 2004, Water pulses and biogeochemical cycles in arid and semiarid ecosystems, Oecologia, 141, 221, 10.1007/s00442-004-1519-1
Baisden, 2003, An analytical approach to ecosystem biogeochemistry modeling, Ecological Applications, 13, 649, 10.1890/1051-0761(2003)013[0649:AAATEB]2.0.CO;2
Balesdent, 1987, The turnover of soil organic fractions estimated by radiocarbon dating, Science of the Total Environment, 62, 405, 10.1016/0048-9697(87)90528-6
Bar, 2002, Modelling the survival of bacteria in drylands: the advantage of being dormant, Proceedings of the Royal Society of London Series B – Biological Sciences, 269, 937, 10.1098/rspb.2002.1958
Barraclough, 1997, The direct or MIT route for nitrogen immobilization: a N-15 mirror image study with leucine and glycine, Soil Biology & Biochemistry, 29, 101, 10.1016/S0038-0717(96)00241-6
Beare, 1995, A hierarchical approach to evaluating the significance of soil biodiversity to biogeochemical cycling, Plant and Soil, 170, 5, 10.1007/BF02183051
Beek, 1973
Benbi, 2002, A critical review of some approaches to modelling nitrogen mineralization, Biology and Fertility of Soils, 35, 168, 10.1007/s00374-002-0456-6
Berendse, 1987, The effect of lignin and nitrogen on the decomposition of litter in nutrient-poor ecosystems – a theoretical approach, Canadian Journal of Botany, 65, 1116, 10.1139/b87-155
Berg, 2003
Birkinshaw, 2000, Nitrogen transformation component for SHETRAN catchment nitrate transport modelling, Journal of Hydrology, 230, 1, 10.1016/S0022-1694(00)00174-8
Blagodatsky, 1993, Effect of mineral nitrogen on respiration rate and growth efficiency of soil microorganisms, Eurasian Soil Science, 25, 85
Blagodatsky, 1998, Microbial growth in soil and nitrogen turnover: a theoretical model considering the activity state of microorganisms, Soil Biology & Biochemistry, 30, 1743, 10.1016/S0038-0717(98)00028-5
Blanco-Canqui, 2004, Mechanisms of carbon sequestration in soil aggregates, Critical Reviews in Plant Sciences, 23, 481, 10.1080/07352680490886842
Bolin, 1981, Steady state and response characteristics of a simple model of the carbon cycle, 315
Bolker, 1998, Linear analysis of soil decomposition: insights from the century model, Ecological Applications, 8, 425, 10.1890/1051-0761(1998)008[0425:LAOSDI]2.0.CO;2
Bosatta, 1981, A qualitative-analysis of the stability of the root-microorganism soil system. 1. Carbon-nitrogen status and nitrogen mineralization, Ecological Modelling, 13, 223, 10.1016/0304-3800(81)90029-6
Bosatta, 1985, Theoretical-analysis of decomposition of heterogeneous substrates, Soil Biology & Biochemistry, 17, 601, 10.1016/0038-0717(85)90035-5
Bosatta, 1991, Theoretical-analysis of carbon and nutrient interactions in soils under energy-limited conditions, Soil Science Society of America Journal, 55, 728, 10.2136/sssaj1991.03615995005500030015x
Bosatta, 1994, Theoretical-analysis of microbial biomass dynamics in soils, Soil Biology & Biochemistry, 26, 143, 10.1016/0038-0717(94)90206-2
Bosatta, 1995, Theoretical analyses of interactions between inorganic nitrogen and soil organic-matter, European Journal of Soil Science, 46, 109, 10.1111/j.1365-2389.1995.tb01817.x
Bosatta, 1996, Theoretical analyses of carbon and nutrient dynamics in soil profiles, Soil Biology & Biochemistry, 28, 1523, 10.1016/S0038-0717(96)00167-8
Bosatta, 2003, Exact solutions to the continuous-quality equation for soil organic matter turnover, Journal of Theoretical Biology, 224, 97, 10.1016/S0022-5193(03)00147-4
Bosatta, 1984, Energy or nutrient regulation of decomposition – implications for the mineralization immobilization response to perturbations, Soil Biology & Biochemistry, 16, 63, 10.1016/0038-0717(84)90127-5
Botter, 2008, Probabilistic dynamics of soil nitrate: coupling of ecohydrological and biogeochemical processes, Water Resources Research, 44, 10.1029/2007WR006108
Botter, 2006, A stochastic model of nitrate transport and cycling at basin scale, Water Resources Research, 42, 10.1029/2005WR004599
Bradbury, 1993, Modeling the fate of nitrogen in crop and soil in the years following application of N-15-labeled fertilizer to winter-wheat, Journal of Agricultural Science, 121, 363, 10.1017/S0021859600085567
Brady, 2002
Brenner, 2001, Soil N and N-15 variation with time in a California annual grassland ecosystem, Geochimica et Cosmochimica Acta, 65, 4171, 10.1016/S0016-7037(01)00699-8
Bruun, 2007, Modeling vertical movement of organic matter in a soil incubated for 41 years with C-14 labeled straw, Soil Biology & Biochemistry, 39, 368, 10.1016/j.soilbio.2006.07.003
Bruun, 2004, Estimating vital statistics and age distributions of measurable soil organic carbon fractions based on their pathway of formation and radiocarbon content, Journal of Theoretical Biology, 230, 241, 10.1016/j.jtbi.2004.05.005
Bruun, 2005, Estimating turnover of soil organic carbon fractions based on radiocarbon measurements, Radiocarbon, 47, 99, 10.1017/S0033822200052231
Bunnell, 1974, ABISKO – a generalized decomposition model for comparisons between tundra sites, 227
Bunnell, 1975, ABISKO II. A computer simulation model of carbon flux in tundra ecosystems, 448
Carpenter, 1981, Decay of heterogenous detritus – a general-model, Journal of Theoretical Biology, 89, 539, 10.1016/0022-5193(81)90026-6
Chapman, 1986, Importance of cryptic growth, yield factors and maintenance energy in models of microbial-growth in soil, Soil Biology & Biochemistry, 18, 1, 10.1016/0038-0717(86)90095-7
Cherif, 2007, Stoichiometric constraints on resource use, competitive interactions, and elemental cycling in microbial decomposers, American Naturalist, 169, 709, 10.1086/516844
Cherif, 2009, When microbes and consumers determine the limiting nutrient of autotrophs: a theoretical analysis, Proceedings of the Royal Society B – Biological Sciences, 276, 487, 10.1098/rspb.2008.0560
Chertov, 1997, SOMM: a model of soil organic matter dynamics, Ecological Modelling, 94, 177, 10.1016/S0304-3800(96)00017-8
Cleveland, 2007, C:N:P stoichiometry in soil: is there a “Redfield ratio” for the microbial biomass?, Biogeochemistry, 85, 235, 10.1007/s10533-007-9132-0
Comins, 1993, Long-term response of nutrient-limited forests to CO2 enrichment – equilibrium behavior of plant–soil models, Ecological Applications, 3, 666, 10.2307/1942099
Craig, 1957, The natural distribution of radiocarbon and the exchange time of carbon dioxide between atmosphere and sea, Tellus, 9, 1, 10.1111/j.2153-3490.1957.tb01848.x
Currie, 2003, Relationships between carbon turnover and bioavailable energy fluxes in two temperate forest soils, Global Change Biology, 9, 919, 10.1046/j.1365-2486.2003.00637.x
Currie, 1997, Modeling leaching as a decomposition process in humid montane forests, Ecology, 78, 1844, 10.1890/0012-9658(1997)078[1844:MLAADP]2.0.CO;2
Currie, 1999, Soil detrital processes controlling the movement of N-15 tracers to forest vegetation, Ecological Applications, 9, 87
D'Odorico, 2003, Hydrologic controls on soil carbon and nitrogen cycles. II. A case study, Advances in Water Resources, 26, 59, 10.1016/S0309-1708(02)00095-7
D'Odorico, 2004, Probabilistic modeling of nitrogen and carbon dynamics in water-limited ecosystems, Ecological Modelling, 179, 205, 10.1016/j.ecolmodel.2004.06.005
Daly, 2008, A stochastic model for daily subsurface CO2 concentration and related soil respiration, Advances in Water Resources, 31, 987, 10.1016/j.advwatres.2008.04.001
Darrah, 1991, Models of the rhizosphere. 1. Microbial-population dynamics around a root releasing soluble and insoluble carbon, Plant and Soil, 133, 187, 10.1007/BF00009191
Daufresne, 2001, Ecological stoichiometry, primary producer–decomposer interactions, and ecosystem persistence, Ecology, 82, 3069
De Gryze, 2006, Quantifying water-stable soil aggregate turnover and its implication for soil organic matter dynamics in a model study, European Journal of Soil Science, 57, 693, 10.1111/j.1365-2389.2005.00760.x
Deans, 1986, Models for predicting potentially mineralizable nitrogen and decomposition rate constants, Soil Science Society of America Journal, 50, 323, 10.2136/sssaj1986.03615995005000020014x
Del Grosso, 2001, Simulated interaction of carbon dynamics and nitrogen trace gas fluxes using the DAYCENT model, 303
Deruiter, 1993, Simulation of nitrogen mineralization in the belowground food webs of two winter-wheat fields, Journal of Applied Ecology, 30, 95, 10.2307/2404274
Dewilligen, 1991, Nitrogen turnover in the soil–crop system – comparison of 14 simulation-models, Fertilizer Research, 27, 141, 10.1007/BF01051122
Dewilligen, 1985, Comparison of six simulation-models for the nitrogen-cycle in the soil, Fertilizer Research, 8, 157, 10.1007/BF01048899
Elzein, 1995, Mechanistic simulation of vertical-distribution of carbon concentrations and residence times in soils, Soil Science Society of America Journal, 59, 1328, 10.2136/sssaj1995.03615995005900050019x
Emanuel, 1981, Modelling the circulation of carbon in the world's terrestrial ecosystems, 335
Eriksson, 1956, On a mathematical model of the carbon cycle in nature, Tellus, 8, 155, 10.1111/j.2153-3490.1956.tb01207.x
Ettema, 2002, Spatial soil ecology, Trends in Ecology & Evolution, 17, 177, 10.1016/S0169-5347(02)02496-5
Fang, 2005, Incorporating microorganisms as decomposers into models to simulate soil organic matter decomposition, Geoderma, 129, 139, 10.1016/j.geoderma.2004.12.038
Foereid, 2004, Modelling the impact of microbial grazers on soluble rhizodeposit turnover, Plant and Soil, 267, 329, 10.1007/s11104-005-0139-9
Foley, 1995, An equilibrium-model of the terrestrial carbon budget, Tellus Series B – Chemical and Physical Meteorology, 47, 310, 10.1034/j.1600-0889.47.issue3.3.x
Fontaine, 2005, Size and functional diversity of microbe populations control plant persistence and long-term soil carbon accumulation, Ecology Letters, 8, 1075, 10.1111/j.1461-0248.2005.00813.x
Forney, D.C., Rothman, D.H., 2007. Decomposition of soil organic matter from physically derived decay rates. In: American Geophysical Union Fall Meeting, San Francisco, CA.
Friend, 1997, A process-based, terrestrial biosphere model of ecosystem dynamics (Hybrid v3.0), Ecological Modelling, 95, 249, 10.1016/S0304-3800(96)00034-8
Frolking, 2001, Modeling northern peatland decomposition and peat accumulation, Ecosystems, 4, 479, 10.1007/s10021-001-0105-1
Furniss, 1982, A model of savanna litter decomposition, Ecological Modelling, 17, 33, 10.1016/0304-3800(82)90085-0
Garcia, 1994, Microbial biomass dynamics in tallgrass prairie, Soil Science Society of America Journal, 58, 816, 10.2136/sssaj1994.03615995005800030026x
Garnier, 2001, Evaluation of a nitrogen transport and transformation model in a bare soil, European Journal of Soil Science, 52, 253, 10.1046/j.1365-2389.2001.00374.x
Gignoux, 2001, Design and test of a generic cohort model of soil organic matter decomposition: the SOMKO model, Global Ecology and Biogeography, 10, 639, 10.1046/j.1466-822X.2001.00250.x
Ginovart, 2005, Individual-based modelling of microbial activity to study mineralization of C and N and nitrification process in soil, Nonlinear Analysis – Real World Applications, 6, 773, 10.1016/j.nonrwa.2004.12.005
Godwin, 1992, Nitrogen dynamics in soil–plant systems, 287
Grant, 2001, Modeling transformations of soil organic carbon and nitrogen at different scales of complexity, 597
Grant, 1993, Simulation of carbon and nitrogen transformations in soil – mineralization, Soil Biology & Biochemistry, 25, 1317, 10.1016/0038-0717(93)90046-E
Griffiths, 1992, Root-induced nitrogen mineralization – a nitrogen-balance model, Plant and Soil, 139, 253, 10.1007/BF00009317
Gusman, 1999, Analytical modeling of nitrogen dynamics in soils and ground water, Journal of Irrigation and Drainage Engineering – ASCE, 125, 330, 10.1061/(ASCE)0733-9437(1999)125:6(330)
Hadas, 1987, Simulation of N-15 immobilization by the model Ncsoil, Soil Science Society of America Journal, 51, 102, 10.2136/sssaj1987.03615995005100010022x
Hadas, 1998, Reduced CO2 release from decomposing wheat straw under N-limiting conditions: simulation of carbon turnover, European Journal of Soil Science, 49, 487, 10.1046/j.1365-2389.1998.4930487.x
Halfon, 1979, Preview: theory in ecosystem analysis, 1
Hansen, 1991, Simulation of nitrogen dynamics and biomass production in winter-wheat using the Danish simulation-model Daisy, Fertilizer Research, 27, 245, 10.1007/BF01051131
Harte, 1975, On the vulnerability of ecosystems disturbed by man, 302
Harte, 1993, Mutualism and competition between plants and decomposers – implications for nutrient allocation in ecosystems, American Naturalist, 141, 829, 10.1086/285511
Harvey, 1989, Effect of model structure on the response of terrestrial biosphere models to CO2 and temperature increases, Global Biogeochemical Cycles, 3, 137, 10.1029/GB003i002p00137
Hassink, 1997, A model of the physical protection of organic matter in soils, Soil Science Society of America Journal, 61, 131, 10.2136/sssaj1997.03615995006100010020x
Henin, 1945, Essai de bilan de la matière organique du sol, Annales Agronomiques, 3, 17
Henriksen, 1999, Nitrogen availability effects on carbon mineralization, fungal and bacterial growth, and enzyme activities during decomposition of wheat straw in soil, Soil Biology & Biochemistry, 31, 1121, 10.1016/S0038-0717(99)00030-9
Holland, 1978
Hunt, 1987, The detrital food web in a shortgrass prairie, Biology and Fertility of Soils, 3, 57, 10.1007/BF00260580
Hunt, 1983, A conceptual model for interactions among carbon, nitrogen, sulphur, and phosphorus in grasslands, 303
Hunt, 1991, Simulation-model for the effects of climate change on temperate grassland ecosystems, Ecological Modelling, 53, 205, 10.1016/0304-3800(91)90157-V
Huwe, 1995, Deterministic and stochastic modelling of water, heat and nitrogen dynamics on different scales with WHNSIM, Journal of Contaminant Hydrology, 20, 265, 10.1016/0169-7722(95)00073-9
Ingwersen, 2008, Micro-scale modelling of carbon turnover driven by microbial succession at a biogeochemical interface, Soil Biology & Biochemistry, 40, 864, 10.1016/j.soilbio.2007.10.018
Jans-Hammermeister, 1997, Evaluation of three simulation models used to describe plant residue decomposition in soil, Ecological Modelling, 104, 1, 10.1016/S0304-3800(97)00072-0
Janssen, 1984, A simple method for calculating decomposition and accumulation of young soil organic-matter, Plant and Soil, 76, 297, 10.1007/BF02205588
Jansson, 1958, Tracer studies on nitrogen transformations in soils with special attention to mineralization–immobilization relationships, Annals of the Royal Agricultural College of Sweden, 24, 101
Jenkinson, 1990, The turnover of organic-carbon and nitrogen in soil, Philosophical Transactions of the Royal Society of London Series B – Biological Sciences, 329, 361, 10.1098/rstb.1990.0177
Jenkinson, 2008, The turnover of organic carbon in subsoils. Part 2. Modelling carbon turnover, European Journal of Soil Science, 59, 400, 10.1111/j.1365-2389.2008.01026.x
Jenkinson, 1977, The turnover of soil organic matter in some of the Rothamsted classical experiments, Soil Science, 123, 298, 10.1097/00010694-197705000-00005
Jenny, 1941
Jenny, 1949, Comparative study of decomposition rates of organic matter in temperate and tropical regions, Soil Science, 68, 419, 10.1097/00010694-194912000-00001
Jensen, 1997, Temporal variation of C and N mineralization, microbial biomass and extractable organic pools in soil after oilseed rape straw incorporation in the field, Soil Biology & Biochemistry, 29, 1043, 10.1016/S0038-0717(97)00014-X
Johnsson, 1987, Simulated nitrogen dynamics and losses in a layered agricultural soil, Agriculture Ecosystems & Environment, 18, 333, 10.1016/0167-8809(87)90099-5
Jones, 1984, A simplified soil and plant phosphorus model.1. Documentation, Soil Science Society of America Journal, 48, 800, 10.2136/sssaj1984.03615995004800040020x
Juma, 1984, Kinetic-analysis of net nitrogen mineralization in soil, Soil Science Society of America Journal, 48, 753, 10.2136/sssaj1984.03615995004800040011x
Kätterer, 2001, The ICBM family of analytically solved models of soil carbon, nitrogen and microbial biomass dynamics descriptions and application examples, Ecological Modelling, 136, 191, 10.1016/S0304-3800(00)00420-8
Katul, 2007, Stochastic dynamics of plant–water interactions, Annual Review of Ecology Evolution and Systematics, 38, 767, 10.1146/annurev.ecolsys.38.091206.095748
Kemmitt, 2008, Mineralization of native soil organic matter is not regulated by the size, activity or composition of the soil microbial biomass – a new perspective, Soil Biology & Biochemistry, 40, 61, 10.1016/j.soilbio.2007.06.021
Kersebaum, 1994, A model approach to simulate C and N transformations through microbial biomass, European Journal of Agronomy, 3, 355, 10.1016/S1161-0301(14)80166-4
Kindermann, 1993, Structure of a global and seasonal carbon exchange model for the terrestrial biosphere – the Frankfurt biosphere model (Fbm), Water, Air and Soil Pollution, 70, 675, 10.1007/BF01105029
Kirkham, 1954, Equations for following nutrient transformations in soil, utilizing tracer data, Soil Science Society of America Proceedings, 18, 33, 10.2136/sssaj1954.03615995001800010009x
Kirkham, 1955, Equations for following nutrient transformations in soil, utilizing tracer data: II, Soil Science Society of America Proceedings, 19, 189, 10.2136/sssaj1955.03615995001900020020x
Kirschbaum, 2002, Modelling C and N dynamics in forest soils with a modified version of the CENTURY model, Soil Biology & Biochemistry, 34, 341, 10.1016/S0038-0717(01)00189-4
Knapp, 1983, Carbon, nitrogen and microbial biomass interrelationships during the decomposition of wheat straw – a mechanistic simulation-model, Soil Biology & Biochemistry, 15, 455, 10.1016/0038-0717(83)90011-1
Korsaeth, 2001, Modelling the competition for nitrogen between plants and microflora as a function of soil heterogeneity, Soil Biology & Biochemistry, 33, 215, 10.1016/S0038-0717(00)00132-2
Kravchenko, 2004, Mathematical simulation of the dynamics of interacting populations of rhizosphere microorganisms, Microbiology, 73, 189, 10.1023/B:MICI.0000023988.11064.43
Kucharik, 2000, Testing the performance of a dynamic global ecosystem model: water balance, carbon balance, and vegetation structure, Global Biogeochemical Cycles, 14, 795, 10.1029/1999GB001138
Kuijper, 2005, Global change effects on a mechanistic decomposer food web model, Global Change Biology, 11, 249, 10.1111/j.1365-2486.2005.00898.x
Kuka, 2007, Modelling the impact of pore space distribution on carbon turnover, Ecological Modelling, 208, 295, 10.1016/j.ecolmodel.2007.06.002
Kumada, 2008, Litter carbon dynamics analysis in forests in an arid ecosystem with a model incorporating the physical removal of litter, Ecological Modelling, 10.1016/j.ecolmodel.2008.02.022
Kuzyakov, 2009, Comments on the paper by Kemmitt et al. (2009) ‘Mineralization of native soil organic matter is not regulated by the size, activity or composition of the soil microbial biomass – a new perspective’ [Soil Biology & Biochemistry 40, 61–73]. The biology of the regulatory gate, Soil Biology & Biochemistry, 41, 435, 10.1016/j.soilbio.2008.07.023
Lal, 2008, Carbon sequestration, Philosophical Transactions of the Royal Society B – Biological Sciences, 363, 815, 10.1098/rstb.2007.2185
Leffelaar, 1988, Dynamics of partial anaerobiosis, denitrification, and water in a soil aggregate – simulation, Soil Science, 146, 427, 10.1097/00010694-198812000-00004
Leffelaar, 1993, Water-movement, oxygen-supply and biological processes on the aggregate scale, Geoderma, 57, 143, 10.1016/0016-7061(93)90152-B
Leffelaar, 1988, Denitrification in a homogeneous, closed system – experiment and simulation, Soil Science, 146, 335, 10.1097/00010694-198811000-00006
Li, 2000, A process-oriented model of N2O and NO emissions from forest soils: 1. Model development, Journal of Geophysical Research – Atmospheres, 105, 4369, 10.1029/1999JD900949
Li, 1992, A model of nitrous-oxide evolution from soil driven by rainfall events. 1. Model structure and sensitivity, Journal of Geophysical Research – Atmospheres, 97, 9759, 10.1029/92JD00509
Liski, 2005, Carbon and decomposition model Yasso for forest soils, Ecological Modelling, 189, 168, 10.1016/j.ecolmodel.2005.03.005
Liu, 2005, Nitrogen controls on ecosystem carbon sequestration: a model implementation and application to Saskatchewan, Canada, Ecological Modelling, 186, 178, 10.1016/j.ecolmodel.2005.01.036
Liu, 2007, Overview of some theoretical approaches for derivation of the Monod equation, Applied Microbiology and Biotechnology, 73, 1241, 10.1007/s00253-006-0717-7
Long, 2005, Aquatic habitats and diffusion constraints affecting microbial coexistence in unsaturated porous media, Water Resources Research, 41, 10.1029/2004WR003796
Loreau, 1998, Ecosystem development explained by competition within and between material cycles, Proceedings of the Royal Society of London Series B – Biological Sciences, 265, 33, 10.1098/rspb.1998.0260
Loreau, 2001, Microbial diversity, producer–decomposer interactions and ecosystem processes: a theoretical model, Proceedings of the Royal Society of London Series B – Biological Sciences, 268, 303, 10.1098/rspb.2000.1366
Luo, 1999, Validity of extrapolating field CO2 experiments to predict carbon sequestration in natural ecosystems, Ecology, 80, 1568, 10.1890/0012-9658(1999)080[1568:VOEFCE]2.0.CO;2
Ma, 2001, A review of carbon and nitrogen processes in nine U.S. soil nitrogen dynamics models, 55
Maggi, 2008, A mechanistic treatment of the dominant soil nitrogen cycling processes: model development, testing, and application, Water Resources Research, 113
Maggi, 2007, Coupled moisture and microbial dynamics in unsaturated soils, Water Resources Research, 43, 10.1029/2006WR005367
Manzoni, 2008, The global stoichiometry of litter nitrogen mineralization, Science, 321, 684, 10.1126/science.1159792
Manzoni, 2008, Soil heterogeneity in lumped mineralization–immobilization models, Soil Biology & Biochemistry, 40, 1137, 10.1016/j.soilbio.2007.12.006
Manzoni, 2007, Theoretical analysis of nonlinearities and feedbacks in soil carbon and nitrogen cycles, Soil Biology & Biochemistry, 39, 1542, 10.1016/j.soilbio.2007.01.006
Manzoni, 2004, Soil nutrient cycles as a nonlinear dynamical system, Nonlinear Processes in Geophysics, 11, 589, 10.5194/npg-11-589-2004
Manzoni, S., Trofymow, J.A., Jackson, R.B., Porporato, A. Stoichiometric controls on the dynamics of carbon, nitrogen, and phosphorus in decomposing litter. Ecological Monographs, under review.
Manzoni, S., Katul, G., Porporato, A. Linear theory of soil biogeochemistry: an analysis of soil carbon residence times, in preparation.
Mary, 1998, A model for calculating nitrogen fluxes in soil using N-15 tracing, Soil Biology & Biochemistry, 30, 1963, 10.1016/S0038-0717(98)00068-6
Masse, 2007, MIOR: an individual-based model for simulating the spatial patterns of soil organic matter microbial decomposition, European Journal of Soil Science, 58, 1127, 10.1111/j.1365-2389.2007.00900.x
McGechan, 2001, A review of carbon and nitrogen processes in European soil nitrogen dynamics models, 103
McGill, 1996, Review and classification of ten soil organic matter (SOM) models, 111
McGill, 1981, Phoenix, a model of the dynamics of carbon and nitrogen in grassland soils, Ecological Bullettins, 49
McMurtrie, 2001, Increased understanding of nutrient immobilization in soil organic matter is critical for predicting the carbon sink strength of forest ecosystems over the next 100 years, Tree Physiology, 21, 831, 10.1093/treephys/21.12-13.831
Mehran, 1974, Computer modeling of nitrogen transformations in soils, Journal of Environmental Quality, 3, 391, 10.2134/jeq1974.00472425000300040020x
Melillo, 1995, Vegetation ecosystem modeling and analysis project - comparing biogeography and biogeochemistry models in a continental-scale study of terrestrial ecosystem responses to climate-change and CO2 doubling, Global Biogeochemical Cycles, 9, 407, 10.1029/95GB02746
Michalzik, 2003, Modelling the production and transport of dissolved organic carbon in forest soils, Biogeochemistry, 66, 241, 10.1023/B:BIOG.0000005329.68861.27
Minderman, 1968, Addition, decomposition and accumulation of organic matter in forests, Journal of Ecology, 56, 355, 10.2307/2258238
Molina, 1983, Ncsoil, a model of nitrogen and carbon transformations in soil – description, calibration, and behavior, Soil Science Society of America Journal, 47, 85, 10.2136/sssaj1983.03615995004700010017x
Molina, J.A.E., Smith, P., 1998. Modeling carbon and nitrogen processes in soils. In: Advances in Agronomy, vol. 62, pp. 253–298.
Moore, 2004, Detritus, trophic dynamics and biodiversity, Ecology Letters, 7, 584, 10.1111/j.1461-0248.2004.00606.x
Moore, 2005, Modeling trophic pathways, nutrient cycling, and dynamic stability in soils, Pedobiologia, 49, 499, 10.1016/j.pedobi.2005.05.008
Moorhead, 1999, Climate and litter quality controls on decomposition: an analysis of modeling approaches, Global Biogeochemical Cycles, 13, 575, 10.1029/1998GB900014
Moorhead, 1991, A general-model of litter decomposition in the northern Chihuahuan desert, Ecological Modelling, 56, 197, 10.1016/0304-3800(91)90200-K
Moorhead, 2006, A theoretical model of litter decay and microbial interaction, Ecological Monographs, 76, 151, 10.1890/0012-9615(2006)076[0151:ATMOLD]2.0.CO;2
Neff, 2001, Dissolved organic carbon in terrestrial ecosystems: synthesis and a model, Ecosystems, 4, 29, 10.1007/s100210000058
Neill, 2006, Soil organic matter decomposition driven by microbial growth: a simple model for a complex network of interactions, Soil Biology & Biochemistry, 38, 803, 10.1016/j.soilbio.2005.07.007
Nicolardot, 2001, Simulation of C and N mineralisation during crop residue decomposition: a simple dynamic model based on the C:N ratio of the residues, Plant and Soil, 228, 83, 10.1023/A:1004813801728
Nikiforoff, 1936, Some general aspects of the chernozem formation, Soil Science Society of America Proceedings, 1, 333, 10.2136/sssaj1937.03615995000100000060x
O'Brien, 1978, Movement and turnover of soil organic-matter as indicated by carbon isotope measurements, Soil Biology & Biochemistry, 10, 309, 10.1016/0038-0717(78)90028-7
Olson, 1963, Energy storage and the balance of producer and decomposers in ecological systems, Ecology, 44, 322, 10.2307/1932179
Osler, 2007, Toward a complete soil C and N cycle: incorporating the soil fauna, Ecology, 88, 1611, 10.1890/06-1357.1
Panikov, 1996, A kinetic method for estimating the biomass of microbial functional groups in soil, Journal of Microbiological Methods, 24, 219, 10.1016/0167-7012(95)00074-7
Pansu, 2004, Comparison of five soil organic matter decomposition models using data from a C-14 and N-15 labeling field experiment, Global Biogeochemical Cycles, 18, 10.1029/2004GB002230
Pansu, 2008, A modeling method to quantify in situ the input of carbon from roots and the resulting C turnover in soil, Plant and Soil
Pansu, 2007, Modelling the transformations and sequestration of soil organic matter in two contrasting ecosystems of the Andes, European Journal of Soil Science, 58, 775, 10.1111/j.1365-2389.2006.00867.x
Pansu, 2003, Kinetics of C and N mineralization, N immobilization and N volatilization of organic inputs in soil, Soil Biology & Biochemistry, 35, 37, 10.1016/S0038-0717(02)00234-1
Parnas, 1975, Model for decomposition of organic material by microorganisms, Soil Biology & Biochemistry, 7, 161, 10.1016/0038-0717(75)90014-0
Parnas, 1976, A theoretical explanation of the priming effect based on microbial growth with two limiting substrates, Soil Biology & Biochemistry, 8, 139, 10.1016/0038-0717(76)90079-1
Parton, 1987, Analysis of factors controlling soil organic-matter levels in Great-Plains grasslands, Soil Science Society of America Journal, 51, 1173, 10.2136/sssaj1987.03615995005100050015x
Parton, 1993, Observations and modeling of biomass and soil organic-matter dynamics for the grassland biome worldwide, Global Biogeochemical Cycles, 7, 785, 10.1029/93GB02042
Parton, 1988, Dynamics of C, N, P and S in grassland soils – a model, Biogeochemistry, 5, 109, 10.1007/BF02180320
Pastor, 1986, Influence of climate, soil-moisture, and succession on forest carbon and nitrogen cycles, Biogeochemistry, 2, 3, 10.1007/BF02186962
Patten, 1972, Simulation of shortgrass prairie ecosystem, Simulation, 19, 177, 10.1177/003754977201900602
2007, 532
Paustian, 1994, Modelling soil biology and biochemical processes for sustainable agriculture research, 262
Paustian, 1987, Fungal growth-response to carbon and nitrogen limitation – a theoretical-model, Soil Biology & Biochemistry, 19, 613, 10.1016/0038-0717(87)90107-6
Petersen, 2005, CN-SIM – a model for the turnover of soil organic matter. I. Long-term carbon and radiocarbon development, Soil Biology & Biochemistry, 37, 359, 10.1016/j.soilbio.2004.08.006
Petersen, 2005, CN-SIM: a model for the turnover of soil organic matter. II. Short-term carbon and nitrogen development, Soil Biology & Biochemistry, 37, 375, 10.1016/j.soilbio.2004.08.007
Plante, 2002, A modeling approach to quantifying soil macroaggregate dynamics, Canadian Journal of Soil Science, 82, 181, 10.4141/S01-024
Plante, 2005, The dynamics of soil organic matter and nutrient cycling, 433
Porporato, 2003, Hydrologic controls on soil carbon and nitrogen cycles. I. Modeling scheme, Advances in Water Resources, 26, 45, 10.1016/S0309-1708(02)00094-5
Potter, 1993, Terrestrial ecosystem production – a process model based on global satellite and surface data, Global Biogeochemical Cycles, 7, 811, 10.1029/93GB02725
1996, 429
Raich, 1991, Potential net primary productivity in South-America – application of a global-model, Ecological Applications, 1, 399, 10.2307/1941899
Rastetter, 1991, A general biogeochemical model describing the responses of the C-cycle and N-cycle in terrestrial ecosystems to changes in CO2, climate, and N-deposition, Tree Physiology, 9, 101, 10.1093/treephys/9.1-2.101
Raynaud, 2006, Soil microbial loop and nutrient uptake by plants: a test using a coupled C:N model of plant–microbial interactions, Plant and Soil, 287, 95, 10.1007/s11104-006-9003-9
Richter, 2001
Ridolfi, 2003, The influence of stochastic soil moisture dynamics on gaseous emissions of NO, N2O, and N-2, Hydrological Sciences Journal, 48, 781, 10.1623/hysj.48.5.781.51451
Rijtema, 1991, Some results of nitrogen simulations with the model Animo, Fertilizer Research, 27, 189, 10.1007/BF01051127
Robinson, 1989, Root-induced nitrogen mineralization – a theoretical-analysis, Plant and Soil, 117, 185, 10.1007/BF02220711
Rosenbloom, 2001, Geomorphic evolution of soil texture and organic matter in eroding landscapes, Global Biogeochemical Cycles, 15, 365, 10.1029/1999GB001251
Rothman, 2007, Physical model for the decay and preservation of marine organic carbon, Science, 316, 1325, 10.1126/science.1138211
Roy, 2008, Detrital ontogenic model including decomposer diversity, Ecological Modelling, 10.1016/j.ecolmodel.2008.02.020
Running, 1991, FOREST-BGC, a general-model of forest ecosystem processes for regional applications. 2. Dynamic carbon allocation and nitrogen budgets, Tree Physiology, 9, 147, 10.1093/treephys/9.1-2.147
Russell, 1995, Energetics of bacterial-growth – balance of anabolic and catabolic reactions, Microbiological Reviews, 59, 48, 10.1128/MMBR.59.1.48-62.1995
Russell, 1964, Mathematical expression of seasonal changes in soil organic matter, Nature, 204, 161, 10.1038/204161a0
Russell, 1975, Mathematical treatment of effect of cropping system on soil organic nitrogen in two long-term sequential experiments, Soil Science, 120, 37, 10.1097/00010694-197507000-00006
Ryzhova, 1993, The analysis of stability and bifurcation of carbon turnover in soil-vegetation systems on the basis of the nonlinear model, Systems Analysis Modelling Simulation, 12, 139
Saffih-Hdadi, 2008, Modeling consequences of straw residues export on soil organic carbon, Soil Biology & Biochemistry, 40, 594, 10.1016/j.soilbio.2007.08.022
Saggar, 1996, C-14-labelled ryegrass turnover and residence times in soils varying in clay content and mineralogy, Soil Biology & Biochemistry, 28, 1677, 10.1016/S0038-0717(96)00250-7
Salter, 1933, Factors affecting the accumulation and loss of nitrogen and organic carbon in cropped soils, Journal of the American Society of Agronomy, 25, 622, 10.2134/agronj1933.00021962002500090010x
Sanderman, 2003, Application of eddy covariance measurements to the temperature dependence of soil organic matter mean residence time, Global Biogeochemical Cycles, 17, 10.1029/2001GB001833
Schimel, 2001, Biogeochemical models: implicit versus explicit microbiology, 350
Schimel, 2004, Nitrogen mineralization: challenges of a changing paradigm, Ecology, 85, 591, 10.1890/03-8002
Schimel, 2003, The implications of exoenzyme activity on microbial carbon and nitrogen limitation in soil: a theoretical model, Soil Biology & Biochemistry, 35, 549, 10.1016/S0038-0717(03)00015-4
Schlesinger, 1997
Schwinning, 1996, Analysis of the coexistence mechanisms for grasses and legumes in grazing systems, Journal of Ecology, 84, 799, 10.2307/2960553
Schwinning, 2004, Hierarchy of responses to resource pulses in and and semi-arid ecosystems, Oecologia, 141, 211, 10.1007/s00442-004-1520-8
Seligman, 1981, PAPRAN: a simulation model of annual pasture production limited by rainfall and nitrogen, 283
Shaffer, 1991, Nitrate leaching and economic analysis package (NLEAP): model description and application, 285
Shaffer, 2001, Introduction to simulation of carbon and nitrogen dynamics in soils, 1
Shibu, 2006, Quantitative description of soil organic matter dynamics – a review of approaches with reference to rice-based cropping systems, Geoderma, 137, 1, 10.1016/j.geoderma.2006.08.008
Sinsabaugh, 2008, Stoichiometry of soil enzyme activity at global scale, Ecology Letters, 11, 1252, 10.1111/j.1461-0248.2008.01245.x
Sinsabaugh, 1994, Resource-allocation to extracellular enzyme-production – a model for nitrogen and phosphorus control of litter decomposition, Soil Biology & Biochemistry, 26, 1305, 10.1016/0038-0717(94)90211-9
Sitch, 2003, Evaluation of ecosystem dynamics, plant geography and terrestrial carbon cycling in the LPJ dynamic global vegetation model, Global Change Biology, 9, 161, 10.1046/j.1365-2486.2003.00569.x
Six, 2004, A history of research on the link between (micro)aggregates, soil biota, and soil organic matter dynamics, Soil & Tillage Research, 79, 7, 10.1016/j.still.2004.03.008
Smith, 1986, Calculation of microbial maintenance rates and net nitrogen mineralization in soil at steady-state, Soil Science Society of America Journal, 50, 332, 10.2136/sssaj1986.03615995005000020016x
Smith, 1979, Analytical model of the decomposition of soil organic-matter, Soil Biology & Biochemistry, 11, 585, 10.1016/0038-0717(79)90027-0
Smith, 1998, Soil biota and global change at the ecosystem level: describing soil biota in mathematical models, Global Change Biology, 4, 773, 10.1046/j.1365-2486.1998.00193.x
Smith, 1997, A comparison of the performance of nine soil organic matter models using datasets from seven long-term experiments, Geoderma, 81, 153, 10.1016/S0016-7061(97)00087-6
Sollins, 1996, Stabilization and destabilization of soil organic matter: mechanisms and controls, Geoderma, 74, 65, 10.1016/S0016-7061(96)00036-5
Stanford, 1972, Nitrogen mineralization potential of soils, Soil Science Society of America Journal Proceedings, 36, 465, 10.2136/sssaj1972.03615995003600030029x
Sterner, 2002
Stewart, 2007, Soil carbon saturation: concept, evidence and evaluation, Biogeochemistry, 86, 19, 10.1007/s10533-007-9140-0
Strogatz, 2000
Svirezhev, 1981, The global role of the biosphere in the stabilization of atmospheric CO2 and temperature, 355
Swift, 1979
Tanji, 1982, Modeling of the soil nitrogen cycle, 721
Tateno, 1997, The logic of carbon and nitrogen interactions in terrestrial ecosystems, American Naturalist, 149, 723, 10.1086/286017
Thornley, 1995, Complex dynamics in a carbon-nitrogen model of a grass legume pasture, Annals of Botany, 75, 79, 10.1016/S0305-7364(05)80012-5
Thornley, 2001, Soil carbon storage response to temperature: an hypothesis, Annals of Botany, 87, 591, 10.1006/anbo.2001.1372
Thornley, 1989, A model of nitrogen flows in grassland, Plant Cell and Environment, 12, 863, 10.1111/j.1365-3040.1989.tb01967.x
Toal, 2000, A review of rhizosphere carbon flow modelling, Plant and Soil, 222, 263, 10.1023/A:1004736021965
Tonitto, 2006, Development of a spatial terrestrial nitrogen model for application to Douglas-fir forest ecosystems, Ecological Modelling, 193, 340, 10.1016/j.ecolmodel.2005.08.041
Trumbore, 1993, Comparison of carbon dynamics in tropical and temperate soils using radiocarbon measurements, Global Biogeochemical Cycles, 7, 275, 10.1029/93GB00468
Ulanowicz, 1979, Prediction, chaos, and ecological perspective, 107
van Dam, 1995, Niccce – a model for cycling of nitrogen and carbon isotopes in coniferous forest ecosystems, Ecological Modelling, 79, 255, 10.1016/0304-3800(94)00184-J
van Veen, 1984, Modeling C and N turnover through the microbial biomass in soil, Plant and Soil, 76, 257, 10.1007/BF02205585
van Veen, 1981, Organic carbon dynamics in grassland soils. 1. Background information and computer simulation, Canadian Journal of Soil Science, 61, 185, 10.4141/cjss81-024
Van Wensem, 1997, Carbon and nitrogen fluxes in decomposing leaf litter with microbial–detritivore interactions: model simulations compared to microcosm ecotoxicity tests, Ecological Modelling, 96, 175, 10.1016/S0304-3800(96)00066-X
Verberne, 1990, Modeling organic-matter dynamics in different soils, Netherlands Journal of Agricultural Science, 38, 221, 10.18174/njas.v38i3A.16585
von Luetzow, 2008, Stabilization mechanisms of organic matter in four temperate soils: development and application of a conceptual model, Journal of Plant Nutrition and Soil Science, 171, 111, 10.1002/jpln.200700047
Waksman, 1928, The role of microorganisms in the transformation of organic matter in forest soils, Ecology, 9, 126, 10.2307/1929350
Walter, 2003, Spatio-temporal simulation of the field-scale evolution of organic carbon over the landscape, Soil Science Society of America Journal, 67, 1477, 10.2136/sssaj2003.1477
Wang, 2009, Carbon and nitrogen dynamics in southern African savannas: the effect of vegetation-induced patch-scale heterogeneities and large scale rainfall gradients, Climatic Change, 10.1007/s10584-009-9548-8
Wang, 2007, A model of biogeochemical cycles of carbon, nitrogen, and phosphorus including symbiotic nitrogen fixation and phosphatase production, Global Biogeochemical Cycles, 21, 10.1029/2006GB002797
Westerhoff, 1982, Thermodynamics of growth – non-equilibrium thermodynamics of bacterial-growth – the phenomenological and the mosaic approach, Biochimica et Biophysica Acta, 683, 181, 10.1016/0304-4173(82)90001-5
Whitehead, 1998, A semi-distributed integrated nitrogen model for multiple source assessment in catchments (INCA): part I – model structure and process equations, Science of the Total Environment, 210, 547, 10.1016/S0048-9697(98)00037-0
Whitmore, 1996, Alternative kinetic laws to describe the turnover of the microbial biomass, Plant and Soil, 181, 169, 10.1007/BF00011304
Whitmore, 1996, Describing the mineralization of carbon added to soil in crop residues using second-order kinetics, Soil Biology & Biochemistry, 28, 1435, 10.1016/S0038-0717(96)00153-8
Williams, 1984, A modeling approach to determining the relationship between erosion and soil productivity, Transactions of the ASAE, 27, 129, 10.13031/2013.32748
Wu, 2007, SPACSYS: integration of a 3D root architecture component to carbon, nitrogen and water cycling-model description, Ecological Modelling, 200, 343, 10.1016/j.ecolmodel.2006.08.010
Wutzler, 2008, Colimitation of decomposition by substrate and decomposers – a comparison of model formulations, Biogeosciences, 5, 749, 10.5194/bg-5-749-2008
Young, 2004, Interactions and self-organization in the soil–microbe complex, Science, 304, 1634, 10.1126/science.1097394
Zelenev, 2006, Oscillating dynamics of bacterial populations and their predators in response to fresh organic matter added to soil: the simulation model ‘BACWAVE-WEB’, Soil Biology & Biochemistry, 38, 1690, 10.1016/j.soilbio.2005.11.024
Zelenev, 2000, “BACWAVE”, a spatial–temporal model for traveling waves of bacterial populations in response to a moving carbon source in soil, Microbial Ecology, 40, 260, 10.1007/s002480000029
Zhang, 2008, Modeling forest leaf-litter decomposition and N mineralization in litterbags, placed across Canada: a 5-model comparison, Ecological Modelling, 219, 342, 10.1016/j.ecolmodel.2008.07.014
Zhang, 2007, Modeling mass and nitrogen remaining in litterbags for Canadian forest and climate conditions, Canadian Journal of Soil Science, 87, 413, 10.4141/S06-034
Zheng, 1999, How do soil organisms affect total organic nitrogen storage and substrate nitrogen to carbon ratio in soils? A theoretical analysis, Oikos, 86, 430, 10.2307/3546648