Simplified and Efficient Quantification of Low-abundance Proteins at Very High Multiplex via Targeted Mass Spectrometry
Tài liệu tham khảo
Gillette, 2012, Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry, Nat. Methods, 10, 28, 10.1038/nmeth.2309
Keshishian, 2007, Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution, Mol. Cell. Proteomics, 6, 2212, 10.1074/mcp.M700354-MCP200
Keshishian, 2009, Quantification of cardiovascular biomarkers in patient plasma by targeted mass spectrometry and stable isotope dilution, Mol. Cell. Proteomics, 8, 2339, 10.1074/mcp.M900140-MCP200
Addona, 2011, A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease, Nat. Biotechnol, 29, 635, 10.1038/nbt.1899
Kuhn, 2009, Developing multiplexed assays for troponin I and interleukin-33 in plasma by peptide immunoaffinity enrichment and targeted mass spectrometry, Clin. Chem, 55, 1108, 10.1373/clinchem.2009.123935
Kuhn, 2012, Inter-laboratory evaluation of automated, multiplexed peptide immunoaffinity enrichment coupled to multiple reaction monitoring mass spectrometry for quantifying proteins in plasma, Mol. Cell. Proteomics, 11, 10.1074/mcp.M111.013854
Whiteaker, 2010, An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers, Mol. Cell. Proteomics, 9, 184, 10.1074/mcp.M900254-MCP200
Whiteaker, 2011, A targeted proteomics-based pipeline for verification of biomarkers in plasma, Nat. Biotechnol, 29, 625, 10.1038/nbt.1900
Whiteaker, 2011, Peptide immunoaffinity enrichment coupled with mass spectrometry for peptide and protein quantification, Clin. Lab. Med, 31, 385, 10.1016/j.cll.2011.07.004
Thakur, 2011, Deep and highly sensitive proteome coverage by LC-MS/MS without prefractionation, Mol. Cell. Proteomics, 9, 2529
MacLean, 2010, Skyline: an open source document editor for creating and analyzing targeted proteomics experiments, Bioinformatics, 26, 966, 10.1093/bioinformatics/btq054
Abbatiello, 2010, Automated detection of inaccurate and imprecise transitions in quantitative assays of peptides by multiple monitoring mass spectrometry, Clin. Chem, 56, 291, 10.1373/clinchem.2009.138420
Desmet, 2005, Geometry-independent plate height representation methods for the direct comparison of the kinetic performance of LC supports with a different size of morphology, Anal. Chem, 77, 4058, 10.1021/ac050160z
Broeckhoven, 2010, The kinetic plot method applied to gradient chromatography: theoretical framework and experimental validation, J. Chromatogr. A, 1217, 2787, 10.1016/j.chroma.2010.02.023
Vaast, 2012, Comparison of the gradient kinetic performance of silica monolithic capillary columns with columns packed with 3mm porous and 2.7mm fused-core silica particles, J. Chromatogr. A, 1228, 270, 10.1016/j.chroma.2011.07.089
Gilar, 2004, Implications of column peak capacity on the separation of complex peptide mixtures in single- and two-dimensional high-performance liquid chromatography, J. Chromatogr, 1061, 183, 10.1016/j.chroma.2004.10.092
Liu, 2007, Effects of column length, particle size, gradient length and flow rate on peak capacity of nano-scale liquid chromatography for peptide separations, J. Chromatogr, 1147, 30, 10.1016/j.chroma.2007.02.016
Hsieh, 2012, Effects of column and gradient lengths on peak capacity and peptide identification in nanoflow LC-MS/MS of complex proteomic samples, J. Am. Soc. Mass Spectrom, 24, 148, 10.1007/s13361-012-0508-6
Nagaraj, 2012, System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap, Mol. Cell. Proteomics, 11, 10.1074/mcp.M111.013722
Shi, 2013, Long-gradient separations coupled with selected reaction monitoring for highly sensitive, large scale targeted protein quantification in a single analysis, Anal. Chem, 85, 9196, 10.1021/ac402105s
Shi, 2012, Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum, Proc. Natl. Acad. Sci. U.S.A, 109, 15395, 10.1073/pnas.1204366109
Liu, 2013, Quantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS, Proteomics, 13, 1247, 10.1002/pmic.201200417
Egertson, 2013, Multiplexed MS/MS for improved data-independent acquisition, Nat. Methods, 10, 744, 10.1038/nmeth.2528