Stem Cells, the Molecular Circuitry of Pluripotency and Nuclear Reprogramming
Tài liệu tham khảo
Alon, 2007, Network motifs: theory and experimental approaches, Nat. Rev. Genet., 8, 450, 10.1038/nrg2102
Alvarez-Dolado, 2003, Fusion of bone-marrow-derived cells with Purkinje neurons, cardiomyocytes and hepatocytes, Nature, 425, 968, 10.1038/nature02069
Azuara, 2006, Chromatin signatures of pluripotent cell lines, Nat. Cell Biol., 8, 532, 10.1038/ncb1403
Balsam, 2004, Haematopoietic stem cells adopt mature haematopoietic fates in ischaemic myocardium, Nature, 428, 668, 10.1038/nature02460
Ben-Shushan, 1995, A dynamic balance between ARP-1/COUP-TFII, EAR-3/COUP-TFI, and retinoic acid receptor:retinoid X receptor heterodimers regulates Oct-3/4 expression in embryonal carcinoma cells, Mol. Cell. Biol., 15, 1034, 10.1128/MCB.15.2.1034
Bendall, 2007, IGF and FGF cooperatively establish the regulatory stem cell niche of pluripotent human cells in vitro, Nature, 448, 1015, 10.1038/nature06027
Bernstein, 2006, A bivalent chromatin structure marks key developmental genes in embryonic stem cells, Cell, 125, 315, 10.1016/j.cell.2006.02.041
Bernstein, 2003, Dicer is essential for mouse development, Nat. Genet., 35, 215, 10.1038/ng1253
Blelloch, 2006, Reprogramming efficiency following somatic cell nuclear transfer is influenced by the differentiation and methylation state of the donor nucleus, Stem Cells, 24, 2007, 10.1634/stemcells.2006-0050
Blelloch, 2007, Generation of Induced Pluripotent Stem Cells in the Absence of Drug Selection, Cell Stem Cell, 1, 245, 10.1016/j.stem.2007.08.008
Boiani, 2002, Oct4 distribution and level in mouse clones: consequences for pluripotency, Genes Dev., 16, 1209, 10.1101/gad.966002
Bortvin, 2003, Incomplete reactivation of Oct4-related genes in mouse embryos cloned from somatic nuclei, Development, 130, 1673, 10.1242/dev.00366
Boyer, 2005, Core transcriptional regulatory circuitry in human embryonic stem cells, Cell, 122, 947, 10.1016/j.cell.2005.08.020
Boyer, 2006, Polycomb complexes repress developmental regulators in murine embryonic stem cells, Nature, 441, 349, 10.1038/nature04733
Brambrink, 2006, ES cells derived from cloned and fertilized blastocysts are transcriptionally and functionally indistinguishable, Proc. Natl. Acad. Sci. USA, 103, 933, 10.1073/pnas.0510485103
Brambrink, 2008, Sequential expression of pluripotency markers during direct reprogramming of somatic cells, Cell Stem Cell, 10.1016/j.stem.2008.01.004
Brons, 2007, Derivation of pluripotent epiblast stem cells from mammalian embryos, Nature, 448, 191, 10.1038/nature05950
Chambers, 2004, Self-renewal of teratocarcinoma and embryonic stem cells, Oncogene, 23, 7150, 10.1038/sj.onc.1207930
Chambers, 2003, Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells, Cell, 113, 643, 10.1016/S0092-8674(03)00392-1
Chambers, 2007, Nanog safeguards pluripotency and mediates germline development, Nature, 450, 1230, 10.1038/nature06403
Chen, 2004, MicroRNAs modulate hematopoietic lineage differentiation, Science, 303, 83, 10.1126/science.1091903
Chen, 2006, The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation, Nat. Genet., 38, 228, 10.1038/ng1725
Cibelli, 2002, Parthenogenetic stem cells in nonhuman primates, Science, 295, 819, 10.1126/science.1065637
Clarke, 2000, Generalized potential of adult neural stem cells, Science, 288, 1660, 10.1126/science.288.5471.1660
Cowan, 2005, Nuclear reprogramming of somatic cells after fusion with human embryonic stem cells, Science, 309, 1369, 10.1126/science.1116447
Croft, 2006, Formation of neurons by non-neural adult stem cells: potential mechanism implicates an artifact of growth in culture, Stem Cells, 24, 1841, 10.1634/stemcells.2005-0609
Davis, 1987, Expression of a single transfected cDNA converts fibroblasts to myoblasts, Cell, 51, 987, 10.1016/0092-8674(87)90585-X
De Coppi, 2007, Isolation of amniotic stem cell lines with potential for therapy, Nat. Biotechnol., 25, 100, 10.1038/nbt1274
Do, 2004, Nuclei of embryonic stem cells reprogram somatic cells, Stem Cells, 22, 941, 10.1634/stemcells.22-6-941
Dominguez-Sola, 2007, Non-transcriptional control of DNA replication by c-Myc, Nature, 448, 445, 10.1038/nature05953
Eggan, 2001, Hybrid vigor, fetal overgrowth, and viability of mice derived by nuclear cloning and tetraploid embryo complementation, Proc. Natl. Acad. Sci. USA, 98, 6209, 10.1073/pnas.101118898
Eggan, 2004, Mice cloned from olfactory sensory neurons, Nature, 428, 44, 10.1038/nature02375
Egli, 2007, Developmental reprogramming after chromosome transfer into mitotic mouse zygotes, Nature, 447, 679, 10.1038/nature05879
Evans, 1981, Establishment in culture of pluripotential cells from mouse embryos, Nature, 292, 154, 10.1038/292154a0
Feldman, 2006, G9a-mediated irreversible epigenetic inactivation of Oct-3/4 during early embryogenesis, Nat. Cell Biol., 8, 188, 10.1038/ncb1353
Fernandez, 2003, Genomic targets of the human c-Myc protein, Genes Dev., 17, 1115, 10.1101/gad.1067003
Fuhrmann, 2001, Mouse germline restriction of Oct4 expression by germ cell nuclear factor, Dev. Cell, 1, 377, 10.1016/S1534-5807(01)00038-7
Gan, 2007, Concise review: epigenetic mechanisms contribute to pluripotency and cell lineage determination of embryonic stem cells, Stem Cells, 25, 2, 10.1634/stemcells.2006-0383
Greda, 2006, Mouse zygotes as recipients in embryo cloning, Reproduction, 132, 741, 10.1530/rep.1.01204
Gu, 2005, Orphan nuclear receptor GCNF is required for the repression of pluripotency genes during retinoic acid-induced embryonic stem cell differentiation, Mol. Cell. Biol., 25, 8507, 10.1128/MCB.25.19.8507-8519.2005
Gu, 2006, Differential recruitment of methylated CpG binding domains by the orphan receptor GCNF initiates the repression and silencing of Oct4 expression, Mol. Cell. Biol., 26, 9471, 10.1128/MCB.00898-06
Guan, 2006, Pluripotency of spermatogonial stem cells from adult mouse testis, Nature, 440, 1199, 10.1038/nature04697
Guenther, 2007, A chromatin landmark and transcription initiation at most promoters in human cells, Cell, 130, 77, 10.1016/j.cell.2007.05.042
Gurdon, 2003, The first half-century of nuclear transplantation, Proc. Natl. Acad. Sci. USA, 100, 8048, 10.1073/pnas.1337135100
Hanna, 2007, Therapy of sickle cell anemia by autologous skin derived induced pluripotent stem cells, Science
Harfe, 2005, The RNaseIII enzyme Dicer is required for morphogenesis but not patterning of the vertebrate limb, Proc. Natl. Acad. Sci. USA, 102, 10898, 10.1073/pnas.0504834102
Hart, 2004, Identification, cloning and expression analysis of the pluripotency promoting Nanog genes in mouse and human, Dev. Dyn., 230, 187, 10.1002/dvdy.20034
Hochedlinger, 2002, Monoclonal mice generated by nuclear transfer from mature B and T donor cells, Nature, 415, 1035, 10.1038/nature718
Hochedlinger, 2003, Nuclear transplantation, embryonic stem cells, and the potential for cell therapy, N. Engl. J. Med., 349, 275, 10.1056/NEJMra035397
Hochedlinger, 2006, Nuclear reprogramming and pluripotency, Nature, 441, 1061, 10.1038/nature04955
Hochedlinger, 2007, On the cloning of animals from terminally differentiated cells, Nat. Genet., 39, 136, 10.1038/ng0207-136
Hochedlinger, 2005, Ectopic expression of Oct-4 blocks progenitor-cell differentiation and causes dysplasia in epithelial tissues, Cell, 121, 465, 10.1016/j.cell.2005.02.018
Hornstein, 2005, The microRNA miR-196 acts upstream of Hoxb8 and Shh in limb development, Nature, 438, 671, 10.1038/nature04138
Houbaviy, 2003, Embryonic stem cell-specific MicroRNAs, Dev. Cell, 5, 351, 10.1016/S1534-5807(03)00227-2
Inoue, 2005, Generation of cloned mice by direct nuclear transfer from natural killer T cells, Curr. Biol., 15, 1114, 10.1016/j.cub.2005.05.021
Inoue, 2007, Differential developmental ability of embryos cloned from tissue-specific stem cells, Stem Cells, 25, 1279, 10.1634/stemcells.2006-0747
Ivanova, 2006, Dissecting self-renewal in stem cells with RNA interference, Nature, 442, 533, 10.1038/nature04915
Jackson, 2004, Skeletal muscle fiber-specific green autofluorescence: potential for stem cell engraftment artifacts, Stem Cells, 22, 180, 10.1634/stemcells.22-2-180
Jähner, 1982, De Novo methylation and expression of retroviral genomes during mouse embryogenesis, Nature, 298, 623, 10.1038/298623a0
Jiang, 2002, Pluripotency of mesenchymal stem cells derived from adult marrow, Nature, 418, 41, 10.1038/nature00870
Joseph, 2005, Toward an understanding of the physiological function of Mammalian stem cells, Dev. Cell, 9, 173, 10.1016/j.devcel.2005.07.001
Kanatsu-Shinohara, 2004, Generation of pluripotent stem cells from neonatal mouse testis, Cell, 119, 1001, 10.1016/j.cell.2004.11.011
Kanellopoulou, 2005, Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing, Genes Dev., 19, 489, 10.1101/gad.1248505
Krichevsky, 2006, Specific microRNAs modulate embryonic stem cell-derived neurogenesis, Stem Cells, 24, 857, 10.1634/stemcells.2005-0441
Kuroda, 2005, Octamer and Sox elements are required for transcriptional cis regulation of Nanog gene expression, Mol. Cell. Biol., 25, 2475, 10.1128/MCB.25.6.2475-2485.2005
Lan, 2007, A histone H3 lysine 27 demethylase regulates animal posterior development, Nature, 449, 689, 10.1038/nature06192
Lee, 2006, Control of developmental regulators by Polycomb in human embryonic stem cells, Cell, 125, 301, 10.1016/j.cell.2006.02.043
Lengner, 2007, Oct4 has no role in somatic stem cell self-renewal, Cell Stem Cell, 1, 403, 10.1016/j.stem.2007.07.020
Li, 2004, Odorant receptor gene choice is reset by nuclear transfer from mouse olfactory sensory neurons, Nature, 428, 393, 10.1038/nature02433
Li, 2007, Mice cloned from skin cells, Proc. Natl. Acad. Sci. USA, 104, 2738, 10.1073/pnas.0611358104
Li, 2003, A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells, Proc. Natl. Acad. Sci. USA, 100, 8164, 10.1073/pnas.1332764100
Loh, 2006, The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells, Nat. Genet., 38, 431, 10.1038/ng1760
Loh, 2007, Jmjd1a and Jmjd2c histone H3 Lys 9 demethylases regulate self-renewal in embryonic stem cells, Genes Dev., 21, 2545, 10.1101/gad.1588207
Lovell-Badge, 2007, Many ways to pluripotency, Nat. Biotechnol., 25, 1114, 10.1038/nbt1007-1114
Lowell, 2006, Notch promotes neural lineage entry by pluripotent embryonic stem cells, PLoS Biol., 4, e121, 10.1371/journal.pbio.0040121
Maherali, 2007, Global epigenetic remodeling in directly reprogrammed fibroblasts, Cell Stem Cell, 1, 55, 10.1016/j.stem.2007.05.014
Mansfield, 2004, MicroRNA-responsive ‘sensor’ transgenes uncover Hox-like and other developmentally regulated patterns of vertebrate microRNA expression, Nat. Genet., 36, 1079, 10.1038/ng1421
Martin, 1981, Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells, Proc. Natl. Acad. Sci. USA, 78, 7634, 10.1073/pnas.78.12.7634
Masui, 2007, Pluripotency governed by Sox2 via regulation of Oct3/4 expression in mouse embryonic stem cells, Nat. Cell Biol., 9, 625, 10.1038/ncb1589
Matsui, 1992, Derivation of pluripotential embryonic stem cells from murine primordial germ cells in culture, Cell, 70, 841, 10.1016/0092-8674(92)90317-6
Matsumura, 2007, Targeted chromosome elimination from ES-somatic hybrid cells, Nat. Methods, 4, 23, 10.1038/nmeth973
McGrath, 1984, Inability of mouse blastomere nuclei transferred to enucleated zygotes to support development in vitro, Science, 226, 1317, 10.1126/science.6542249
Meissner, 2007, Direct reprogramming of genetically unmodified fibroblasts into pluripotent stem cells, Nat. Biotechnol., 25, 1177, 10.1038/nbt1335
Mikkelsen, 2007, Genome-wide maps of chromatin state in pluripotent and lineage-committed cells, Nature, 448, 553, 10.1038/nature06008
Mineno, 2006, The expression profile of microRNAs in mouse embryos, Nucleic Acids Res., 34, 1765, 10.1093/nar/gkl096
Mitsui, 2003, The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells, Cell, 113, 631, 10.1016/S0092-8674(03)00393-3
Murchison, 2005, Characterization of Dicer-deficient murine embryonic stem cells, Proc. Natl. Acad. Sci. USA, 102, 12135, 10.1073/pnas.0505479102
Murry, 2004, Haematopoietic stem cells do not transdifferentiate into cardiac myocytes in myocardial infarcts, Nature, 428, 664, 10.1038/nature02446
Nágy, 1990, Embryonic stem cells alone are able to support fetal development in the mouse, Development, 110, 815, 10.1242/dev.110.3.815
Nakagawa, 2008, Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts, Nat. Biotechnol., 26, 101, 10.1038/nbt1374
Nakatake, 2006, Klf4 cooperates with Oct3/4 and Sox2 to activate the Lefty1 core promoter in embryonic stem cells, Mol. Cell. Biol., 26, 7772, 10.1128/MCB.00468-06
Narasimha, 1997, The role of the paternal genome in the development of the mouse germ line, Curr. Biol., 7, 881, 10.1016/S0960-9822(06)00377-0
Neuhuber, 2004, Reevaluation of in vitro differentiation protocols for bone marrow stromal cells: disruption of actin cytoskeleton induces rapid morphological changes and mimics neuronal phenotype, J. Neurosci. Res., 77, 192, 10.1002/jnr.20147
Nichols, 1998, Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4, Cell, 95, 379, 10.1016/S0092-8674(00)81769-9
Oback, 2007, Donor cell differentiation, reprogramming, and cloning efficiency: elusive or illusive correlation?, Mol. Reprod. Dev., 74, 646, 10.1002/mrd.20654
Odom, 2006, Core transcriptional regulatory circuitry in human hepatocytes, Mol. Syst. Biol, 2, 2006.0017, 10.1038/msb4100059
Ogawa, 2006, Synergistic action of Wnt and LIF in maintaining pluripotency of mouse ES cells, Biochem. Biophys. Res. Commun., 343, 159, 10.1016/j.bbrc.2006.02.127
Okamoto, 1990, A novel octamer binding transcription factor is differentially expressed in mouse embryonic cells, Cell, 60, 461, 10.1016/0092-8674(90)90597-8
Okano, 1999, DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development, Cell, 99, 247, 10.1016/S0092-8674(00)81656-6
Okita, 2007, Generation of germline-competent induced pluripotent stem cells, Nature, 448, 313, 10.1038/nature05934
Okumura-Nakanishi, 2005, Oct-3/4 and Sox2 regulate Oct-3/4 gene in embryonic stem cells, J. Biol. Chem., 280, 5307, 10.1074/jbc.M410015200
Park, 2008, Reprogramming of human somatic cells to pluripotency with defined factors, Nature, 451, 141, 10.1038/nature06534
Phinney, 2007, Concise Review: Mesenchymal Stem/Multi-Potent Stromal Cells (MSCs): The state of transdifferentiation and modes of tissue repair - current views, Stem Cells, 25, 2896, 10.1634/stemcells.2007-0637
Pikarsky, 1994, Retinoic acid represses Oct-3/4 gene expression through several retinoic acid-responsive elements located in the promoter-enhancer region, Mol. Cell. Biol., 14, 1026, 10.1128/MCB.14.2.1026
Resnick, 1992, Long-term proliferation of mouse primordial germ cells in culture, Nature, 359, 550, 10.1038/359550a0
Revazova, 2007, Patient-specific stem cell lines derived from human parthenogenetic blastocysts, Cloning Stem Cells, 9, 432, 10.1089/clo.2007.0033
Rideout, 2002, Correction of a genetic defect by nuclear transplantation and combined cell and gene therapy, Cell, 109, 17, 10.1016/S0092-8674(02)00681-5
Rizzino, 2007, A challenge for regenerative medicine: Proper genetic programming, not cellular mimicry, Dev. Dyn., 236, 3199, 10.1002/dvdy.21285
Sánchez Alvarado, 2006, Planarian regeneration: its end is its beginning, Cell, 124, 241, 10.1016/j.cell.2006.01.012
Santos, 2003, Epigenetic marking correlates with developmental potential in cloned bovine preimplantation embryos, Curr. Biol., 13, 1116, 10.1016/S0960-9822(03)00419-6
Schuettengruber, 2007, Genome regulation by polycomb and trithorax proteins, Cell, 128, 735, 10.1016/j.cell.2007.02.009
Seandel, 2007, Generation of functional multipotent adult stem cells from GPR125+ germline progenitors, Nature, 449, 346, 10.1038/nature06129
Silva, 2006, Nanog promotes transfer of pluripotency after cell fusion, Nature, 441, 997, 10.1038/nature04914
Smith, 1988, Inhibition of pluripotential embryonic stem cell differentiation by purified polypeptides, Nature, 336, 688, 10.1038/336688a0
Solter, 2006, From teratocarcinomas to embryonic stem cells and beyond: a history of embryonic stem cell research, Nat. Rev. Genet., 7, 319, 10.1038/nrg1827
Stock, 2007, Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells, Nat. Cell Biol., 9, 1428, 10.1038/ncb1663
Stradtfeld, 2008, Defining molecular cornerstones during fibroblasts to iPS cell reprogramming in mouse, Cell Stem Cell
Suh, 2004, Human embryonic stem cells express a unique set of microRNAs, Dev. Biol., 270, 488, 10.1016/j.ydbio.2004.02.019
Sung, 2006, Differentiated cells are more efficient than adult stem cells for cloning by somatic cell nuclear transfer, Nat. Genet., 38, 1323, 10.1038/ng1895
Surani, 2007, Genetic and epigenetic regulators of pluripotency, Cell, 128, 747, 10.1016/j.cell.2007.02.010
Tada, 2001, Nuclear reprogramming of somatic cells by in vitro hybridization with ES cells, Curr. Biol., 11, 1553, 10.1016/S0960-9822(01)00459-6
Takahashi, 2006, Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors, Cell, 126, 663, 10.1016/j.cell.2006.07.024
Takahashi, 2007, Induction of pluripotent stem cells from adult human fibroblasts by defined factors, Cell, 131, 861, 10.1016/j.cell.2007.11.019
Taranger, 2005, Induction of Dedifferentiation, Genome-wide Transcriptional Programming, and Epigenetic Reprogramming by Extracts of Carcinoma and Embryonic Stem Cells, Mol. Biol. Cell, 16, 5719, 10.1091/mbc.E05-06-0572
Terada, 2002, Bone marrow cells adopt the phenotype of other cells by spontaneous cell fusion, Nature, 416, 542, 10.1038/nature730
Tesar, 2007, New cell lines from mouse epiblast share defining features with human embryonic stem cells, Nature, 448, 196, 10.1038/nature05972
Thomson, 1998, Embryonic stem cell lines derived from human blastocysts, Science, 282, 1145, 10.1126/science.282.5391.1145
van de Ven, 2007, The potential of umbilical cord blood multipotent stem cells for nonhematopoietic tissue and cell regeneration, Exp. Hematol., 35, 1753, 10.1016/j.exphem.2007.08.017
Wagers, 2004, Plasticity of adult stem cells, Cell, 116, 639, 10.1016/S0092-8674(04)00208-9
Wakayama, 2006, Equivalency of nuclear transfer-derived embryonic stem cells to those derived from fertilized mouse blastocysts, Stem Cells, 24, 2023, 10.1634/stemcells.2005-0537
Wakayama, 2007, Efficient establishment of mouse embryonic stem cell lines from single blastomeres and polar bodies, Stem Cells, 25, 986, 10.1634/stemcells.2006-0615
Wang, 2006, A protein interaction network for pluripotency of embryonic stem cells, Nature, 444, 364, 10.1038/nature05284
Wang, 2003, Cell fusion is the principal source of bone-marrow-derived hepatocytes, Nature, 422, 897, 10.1038/nature01531
Wang, 2007, DGCR8 is essential for microRNA biogenesis and silencing of embryonic stem cell self-renewal, Nat. Genet., 39, 380, 10.1038/ng1969
Wernig, 2007, In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state, Nature, 448, 318, 10.1038/nature05944
Wernig, 2008, C-Myc is dispensable for direct reprogramming of mouse fibroblasts, Cell Stem Cell, 2, 10, 10.1016/j.stem.2007.12.001
Wilmut, 1997, Viable offspring derived from fetal and adult mammalian cells, Nature, 385, 810, 10.1038/385810a0
Yamanaka, 2007, Strategies and New Developments in the Generation of Patient-Specific Pluripotent Stem Cells, Cell Stem Cell, 1, 39, 10.1016/j.stem.2007.05.012
Yang, 2007, Nuclear reprogramming of cloned embryos and its implications for therapeutic cloning, Nat. Genet., 39, 295, 10.1038/ng1973
Yekta, 2004, MicroRNA-directed cleavage of HOXB8 mRNA, Science, 304, 594, 10.1126/science.1097434
Ying, 2002, Changing potency by spontaneous fusion, Nature, 416, 545, 10.1038/nature729
Yu, 2006, Human embryonic stem cells reprogram myeloid precursors following cell-cell fusion, Stem Cells, 24, 168, 10.1634/stemcells.2005-0292
Yu, 2007, Induced pluripotent stem cell lines derived from human somatic cells, Science, 318, 1917, 10.1126/science.1151526
Zwaka, 2005, A germ cell origin of embryonic stem cells?, Development, 132, 227, 10.1242/dev.01586