Hormone-mediated plant responses to light quality and quantity

Achard, 2007, DELLAs contribute to plant photomorphogenesis, Plant Physiol., 143, 1163, 10.1104/pp.106.092254 Adamiec, 2008, Redox state of plastoquionone pool regulates expression of Arabidopsis thaliana genes in response to elevated irradiance, Acta Biochim. Pol., 55, 161, 10.18388/abp.2008_3176 Alabadí, 2008, Integration of light and hormone signals, Plant Signal. Behav., 3, 448, 10.4161/psb.3.7.5558 Andres, 2012, The genetic basis of flowering responses to seasonal cues, Nat. Rev. Genet., 13, 627, 10.1038/nrg3291 Asada, 2006, Production and scavenging of reactive oxygen species in chloroplasts and their functions, Plant Physiol., 141, 391, 10.1104/pp.106.082040 Balfagon, 2019, Jasmonic acid is required for plant acclimation to a combination of high light and heat stress, Plant Physiol., 181, 1668, 10.1104/pp.19.00956 Ball, 2004, Evidence for a direct link between glutathione biosynthesis and stress defense gene expression in Arabidopsis, Plant Cell, 16, 2448, 10.1105/tpc.104.022608 Ballaré, 1995, How plants find light in patchy canopies. A comparison between wild-type and phytochrome-B-deficient mutant plants of cucumber, Funct. Ecol., 9, 859, 10.2307/2389983 Ballaré, 1990, Far-red radiation reflected from adjacent leaves: an early signal of competition in plant canopies, Science, 247, 329, 10.1126/science.247.4940.329 Barajas-Lόpez, 2013, Plastid-to-nucleus communication, signals controlling the running of the plant cell, Biochim. Biophys. Acta, 1833, 425, 10.1016/j.bbamcr.2012.06.020 Barber, 1997, The structure, function, and dynamics of photosystem II, Physiol. Plant., 100, 817, 10.1111/j.1399-3054.1997.tb00008.x Barbosa, 2014, D6 PROTEIN KINASE activates auxin transport-dependent growth and PIN-FORMED phosphorylation at the plasma membrane, Dev. Cell, 29, 674, 10.1016/j.devcel.2014.05.006 Bou-Torrent, 2014, Plant proximity perception dynamically modulates hormone levels and sensitivity in Arabidopsis, J. Exp. Bot., 65, 10.1093/jxb/eru083 Briggs, 2001, The phototropin family of photoreceptors, Plant Cell, 13, 993, 10.1105/tpc.13.5.993 Carabelli, 2007, Canopy shade causes a rapid and transient arrest in leaf development through auxin-induced cytokinin oxidase activity, Genes Dev., 21, 10.1101/gad.432607 Casal, 2000, Phytochromes, cryptochromes, phototropin: photoreceptor interactions in plants., Photochemistry and Photobiology, 11, 1, 10.1562/0031-8655(2000)071<0001:PCPPII>2.0.CO;2 Casal, 2012, Shade avoidance, Arab. Book, 10, 10.1199/tab.0157 Chang, 2004, Induction of ASCORBATE PEROXIDASE 2 expression in wounded Arabidopsis leaves does not involve known wound-signaling pathways but is associated with changes in photosynthesis, Plant J., 38, 499, 10.1111/j.1365-313X.2004.02066.x Chaves, 2011, The cryptochromes: blue light photoreceptors in plants and animals, Annu. Rev. Plant Biol., 62, 335, 10.1146/annurev-arplant-042110-103759 Chen, 2015, Ethylene regulates energy-dependent non-photochemical quenching in Arabidopsis through repression of the xanthophyll cycle, PLoS One, 10 Chory, 1994, A role for cytokinins in de-etiolation in Arabidopsis (det mutants have an altered response to cytokinins), Plant Physiol., 104, 339, 10.1104/pp.104.2.339 Christie, 2015, Plant flavoprotein photoreceptors, Plant Cell Physiol., 56, 10.1093/pcp/pcu196 Christie, 2013, Shoot phototropism in higher plants: new light through old concepts, Am. J. Bot., 100, 35, 10.3732/ajb.1200340 Christie, 2011, Phot1 inhibition of ABCB19 primes lateral auxin fluxes in the shoot apex required for phototropism, PLoS Biol., 9, 10.1371/journal.pbio.1001076 Cortleven, 2014, A novel protective function for cytokinin in the light stress response is mediated by the Arabidopsis histidine kinase 2 and Arabidopsis histidine kinase 3 receptors, Plant Physiol., 164, 1470, 10.1104/pp.113.224667 Cortleven, 2015, Regulation of chloroplast development and function by cytokinin, J. Exp. Bot., 66, 4999, 10.1093/jxb/erv132 de Wit, 2016, Light-mediated hormonal regulation of plant growth and development, Ann. Rev. Plant Biol., 67, 513, 10.1146/annurev-arplant-043015-112252 de Wit, 2013, Auxin-mediated plant architectural changes in response to shade and high temperature, Physiol. Plant., 15, 13 Demmig-Adams, 1992, Photoprotection and other responses of plants to high light stress, Annu. Rev. Plant Physiol. Plant Mol. Biol., 43, 599, 10.1146/annurev.pp.43.060192.003123 Devireddy, 2018, Coordinating the overall stomatal response of plants: rapid leaf-to-leaf communication during light stress, Sci. Signal., 20 Dietz, 2016, Redox- and reactive oxygen species-dependent signaling into and out of the photosynthesizing chloroplast, Plant Physiol., 171, 1541, 10.1104/pp.16.00375 Ding, 2011, Light mediated polarization of the PIN3 auxin transporter for the phototropic response in Arabidopsis, Nat. Cell Biol., 13, 447, 10.1038/ncb2208 Eisinger, 2003, Interactions between a blue-green reversible photoreceptor and a separate UV-B receptor in stomatal guard cells, Am. J. Bot., 90, 1560, 10.3732/ajb.90.11.1560 Endo, 2013, PHYTOCHROME DEPENDENT LATE-FLOWERING accelerates flowering through physical interactions with phytochrome B and CONSTANS, Proc. Natl. Acad. Sci. USA, 110, 10.1073/pnas.1310631110 Exposito-Rodriguez, 2017, Photosynthesis-dependent H2O2 transfer from chloroplasts to nuclei provides a high-light signalling mechanism, Nat. Commun., 8, 74, 10.1038/s41467-017-00074-w Fankhauser, 2015, Plant phototropic growth, Curr. Biol., 25, R384, 10.1016/j.cub.2015.03.020 Foyer, 2005, Redox homeostasis and antioxidant signaling: a metabolic interface between stress perception and physiological responses, Plant Cell, 17, 1866, 10.1105/tpc.105.033589 Foyer, 2005, Oxidant and antioxidant signaling in plants: a re-evaluation of the concept of oxidative stress in a physiological context, Plant Cell Environ., 28, 1056, 10.1111/j.1365-3040.2005.01327.x Franklin, 2003, Phytochromes B, D, and E act redundantly to control multiple physiological responses in Arabidopsis, Plant Physiol., 131, 1340, 10.1104/pp.102.015487 Fryer, 2003, Control of ascorbate peroxidase 2 expression by hydrogen peroxide and leaf water status during excess light stress reveals a functional organization of Arabidopsis leaves, Plant J., 33, 691, 10.1046/j.1365-313X.2003.01656.x Gabriele, 2010, The Dof protein DAG1 mediates PIL5 activity on seed germination by negatively regulating GA biosynthetic gene AtGA3ox1, Plant J., 61 Galvao, 2012, Spatial control of flowering by DELLA proteins in Arabidopsis thaliana, Development, 139, 4072, 10.1242/dev.080879 Galvao, 2014, Regulation of flowering by endogenous signals, 72, 63 Galvez-Valdivieso, 2009, The high light response in Arabidopsis involves ABA signaling between vascular and bundle sheath cells, Plant Cell, 21, 2143, 10.1105/tpc.108.061507 Gill, 2010, Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants, Plant Physiol. Biochem., 48, 909, 10.1016/j.plaphy.2010.08.016 Gocal, 2001, GAMYB-like genes, flowering, and gibberellin signaling in Arabidopsis, Plant Physiol., 127, 1682, 10.1104/pp.010442 Goeschl, 1966, Ethylene as a factor regulating the growth of pea epicotyls subjected to physical stress, Plant Physiol., 41, 877, 10.1104/pp.41.5.877 Gommers, 2013, Shade tolerance: when growing tall is not an option, Trends Plant Sci., 18, 65, 10.1016/j.tplants.2012.09.008 Gorecka, 2014, Abscisic acid signaling determines susceptibility of bundle sheath cells to photoinhibition in high light-exposed Arabidopsis leaves, Philos. Trans. R. Soc. Lond. B. Biol. Sci., 69, 20130234, 10.1098/rstb.2013.0234 Goyal, 2013, Phototropism: at the crossroads of light-signaling pathways, Trends Plant Sci., 18, 393, 10.1016/j.tplants.2013.03.002 Havaux, 2000, Photodamage of the photosynthetic apparatus and its dependence on the leaf developmental stage in the npq1 Arabidopsis mutant deficient in the xanthophyll cycle enzyme violaxanthin de-epoxidase, Plant Physiol., 124, 273, 10.1104/pp.124.1.273 Hohm, 2014, Plasma membrane H+ -ATPase regulation is required for auxin gradient formation preceding phototropic growth, Mol. Syst. Biol., 10, 751, 10.15252/msb.20145247 Holmes, 1975, The function of phytochrome in plants growing in the natural environment, Nature, 254, 10.1038/254512a0 Hornitschek, 2012, Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling, Plant J., 71, 699, 10.1111/j.1365-313X.2012.05033.x Huang, 2019, The Arabidopsis transcriptome responds specifically and dynamically to high light stress, Cell Rep., 29 Huang, 2014, Beyond repression of photomorphogenesis: role switching of COP/DET/FUS in light signaling, Curr. Opin. Plant Biol., 21, 96, 10.1016/j.pbi.2014.07.003 Huq, 2004, Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis, Science, 305, 1937, 10.1126/science.1099728 Inoue, 2008, Blue light-induced autophosphorylation of phototropin is a primary step for signaling, Proc. Natl. Acad. Sci. USA, 105, 5626, 10.1073/pnas.0709189105 Janeckova´, 2018, The interplay between cytokinins and light during senescence in detached Arabidopsis leaves, Plant Cell Environ., 41, 1870, 10.1111/pce.13329 Jang, 2008, Arabidopsis COP1 shapes the temporal pattern of CO accumulation conferring a photoperiodic flowering response, EMBO J., 27, 10.1038/emboj.2008.68 Jenkins, 2014, The UV-B photoreceptor UVR8: from structure to physiology, Plant Cell, 26, 21, 10.1105/tpc.113.119446 Jung, 2012, The SOC1-SPL module integrates photoperiod and gibberellic acid signals to control flowering time in Arabidopsis, Plant J., 69, 10.1111/j.1365-313X.2011.04813.x Juvany, 2013, Photo-oxidative stress in emerging and senescing leaves: a mirror image?, J. Exp. Bot., 64, 3087, 10.1093/jxb/ert174 Kagawa, 2009, Blue light-induced phototropism of inflorescence stems and petioles is mediated by phototropin family members phot1 and phot2, Plant Cell Physiol., 50, 1774, 10.1093/pcp/pcp119 Kami, 2010, Light-regulated plant growth and development, Curr. Top. Dev. Biol., 91, 29, 10.1016/S0070-2153(10)91002-8 Kanyuka, 2003, Mutations in the huge Arabidopsis gene BIG affects a range of hormone and light responses, Plant J., 35, 57, 10.1046/j.1365-313X.2003.01779.x Keuskamp, 2010, Auxin transport through PIN-FORMED 3 (PIN3) controls shade avoidance and fitness during competition, Proc. Natl. Acad. Sci. USA, 107, 22740, 10.1073/pnas.1013457108 Kieber, 2018, Cytokinin signaling in plant development, Development, 145, 10.1242/dev.149344 Kim, 2008, SOMNUS, a CCCH-type zinc finger protein in Arabidopsis, negatively regulates light-dependent seed germination downstream of PIL5, Plant Cell, 20, 1260, 10.1105/tpc.108.058859 Kong, 2016, Effects of light intensity on leaf photosynthetic characteristics, chloroplast structure, and alkaloid content of Mahonia bodinieri (Gagnep.) Laferr, Acta Physiol. Plant., 38, 120, 10.1007/s11738-016-2147-1 Krishna Reddy, 2014, Phytochrome B promotes branching in Arabidopsis by suppressing auxin signaling, Plant Physiol., 164, 10.1104/pp.113.234021 Kusnetsov, 2020, Role of phytohormones and light in de-etiolation, Russ. J. Plant Physiol., 67, 971, 10.1134/S1021443720060102 Kusnetsov, 1994, Cytokinins, abscisic acid and light affect accumulation of chloroplast proteins in Lupinus luteus cotyledons without notable effect on steady-state mRNA levels, Planta, 194, 318, 10.1007/BF00197531 Landi, 2020, Plasticity of photosynthetic processes and the accumulation of secondary metabolites in plants in response to monochromatic light environments: a review, BBA Bioeng., 1861 Lang, 1957, The effect of gibberellin upon flower formation, PNAS, 43, 709, 10.1073/pnas.43.8.709 Lau, 2010, Plant hormone signaling lightens up: integrators of light and hormones, Curr. Opin. Plant Biol., 13, 10.1016/j.pbi.2010.07.001 Lazaro, 2012, The Arabidopsis E3 ubiquitin ligase HOS1 negatively regulates CONSTANS abundance in the photoperiodic control of flowering, Plant Cell, 24, 982, 10.1105/tpc.110.081885 Lee, 2012, Spatially and genetically distinct control of seed germination by phytochromes A and B, Genes Dev., 26, 1984, 10.1101/gad.194266.112 Leivar, 2014, PIFs: systems integrators in plant development, Plant Cell, 26, 56, 10.1105/tpc.113.120857 Leivar, 2012, Dynamic antagonism between phytochromes and PIF family basic helix-loop-helix factors induces selective reciprocal responses to light and shade in a rapidly responsive transcriptional network in Arabidopsis, Plant Cell, 24, 10.1105/tpc.112.095711 Li, 2012, Linking photoreceptor excitation to changes in plant architecture, Genes Dev., 26, 785, 10.1101/gad.187849.112 Li, 2009, Sensing and responding to excess light, Annu. Rev. Plant Biol., 60, 239, 10.1146/annurev.arplant.58.032806.103844 Liu, 2018, ERF72 interacts with ARF6 and BZR1 to regulate hypocotyl elongation in Arabidopsis, J. Exp. Bot., 69, 3933, 10.1093/jxb/ery220 Liu, 2008, COP1-mediated ubiquitination of CONSTANS is implicated in cryptochrome regulation of flowering in Arabidopsis, Plant Cell, 20, 292, 10.1105/tpc.107.057281 Liu, 2017, Interplay between light and plant hormones in the control of Arabidopsis seedling chlorophyll biosynthesis, Front. Plant Sci., 8, 1433, 10.3389/fpls.2017.01433 Locascio, 2013, Genomic analysis of DELLA protein activity, Plant Cell Physiol., 54, 1229, 10.1093/pcp/pct082 Lorrain, 2008, Phytochrome-mediated inhibition of shade avoidance involves degradation of growth-promoting bHLH transcription factors, Plant J., 53, 312, 10.1111/j.1365-313X.2007.03341.x Lu, 2015, Red-light-dependent interaction of phyB with SPA1 promotes COP1-SPA1 dissociation and photomorphogenic development in Arabidopsis, Mol. Plant, 8, 467, 10.1016/j.molp.2014.11.025 Luo, 2010, Integration of light-and brassinosteroid-signaling pathways by a GATA transcription factor in Arabidopsis, Dev. Cell, 19, 872, 10.1016/j.devcel.2010.10.023 Marcus, 1985, Electron transfers in chemistry and biology, Biochim. Biophys. Acta (BBA) Rev. Bioenerg., 811, 265, 10.1016/0304-4173(85)90014-X Merilo, 2001, The role of ABA recycling and transporter proteins in rapid stomatal responses to reduced air humidity, elevated CO2, and exogenous ABA, Mol. Plant, 8, 657, 10.1016/j.molp.2015.01.014 Miret, J.A., Muller, M., 2018. AsA/DHA redox pair influencing plant growth and stress tolerance. In: Hossain, M.A., Munne´-Bosch, S., Burrit, D.J., Dıaz-Vivancos, P., Fujita, M., Lorence, A. (Eds.), Ascorbic Acid in Plant Growth, Development and Stress Tolerance. Springer, Berlin, Germany, 297–319. Moglich, 2010, Structure and function of plant photoreceptors, Annu. Rev. Plant Biol., 61, 21, 10.1146/annurev-arplant-042809-112259 Morelli, 2000, Shade avoidance responses. Driving auxin along lateral routes, Plant Physiol., 122, 621, 10.1104/pp.122.3.621 Munoz, 2018, Photo-oxidative stress during leaf, flower and fruit development, Plant Physiol., 176, 1004, 10.1104/pp.17.01127 Munoz, 2019, Vitamin E in plants: biosynthesis, transport, and function, Trends Plant Sci., 24, 1040, 10.1016/j.tplants.2019.08.006 Niyogi, 1999, Photoprotection revisited: genetic and molecular approaches, Ann. Rev. Plant Biol., 50, 333, 10.1146/annurev.arplant.50.1.333 Nozue, 2015, Shade avoidance components and pathways in adult plants revealed by phenotypic profiling, PLoS Genet., 11, 10.1371/journal.pgen.1004953 Ogilby, 2010, Singlet oxygen: there is indeed something new under the sun, Chem. Soc. Rev., 39, 3181, 10.1039/b926014p Oh, 2009, Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis, Plant Cell, 21, 403, 10.1105/tpc.108.064691 Oh, 2007, PIL5, a phytochrome-interacting bHLH protein, regulates gibberellin responsiveness by binding directly to the GAI and RGA promoters in Arabidopsis seeds, Plant Cell, 19, 10.1105/tpc.107.050153 Oh, 2014, Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl, eLife, 3, 10.7554/eLife.03031 Paik, 2019, Plant photoreceptors: multi-functional sensory proteins and their signaling networks, Semin. Cell Dev. Biol., 92, 114, 10.1016/j.semcdb.2019.03.007 Park, 2011, ABI3 and PIL5 collaboratively activate the expression of SOMNUS by directly binding to its promoter in imbibed Arabidopsis seeds, Plant Cell, 23, 10.1105/tpc.110.080721 Parks, 1996, Phytochrome A regulates red-light induction of phototropic enhancement in Arabidopsis, Plant Physiol., 110, 155, 10.1104/pp.110.1.155 Parks, 1999, Sequential and coordinated action of phytochromes A and B during Arabidopsis stem growth revealed by kinetic analysis, Proc. Natl. Acad. Sci. USA, 96, 14142, 10.1073/pnas.96.24.14142 Pierik, 2014, Shade avoidance: phytochrome signaling and other aboveground neighbor detection cues, J. Exp. Bot., 65, 2815, 10.1093/jxb/ert389 Pierik, 2004, Canopy studies on ethylene insensitive tobacco identify ethylene as a novel element in blue light and plant-plant signaling, Plant J., 38, 310, 10.1111/j.1365-313X.2004.02044.x Pinto-Marijuan, 2014, Photo-oxidative stress markers as a measure of abiotic stress-induced leaf senescence: advantages and limitations, J. Exp. Bot., 65, 3845, 10.1093/jxb/eru086 Piskurewicz, 2009, Far-red light inhibits germination through DELLA-dependent stimulation of ABA synthesis and ABI3 activity, EMBO J., 28, 2259, 10.1038/emboj.2009.170 Porri, 2012, Spatially distinct regulatory roles for gibberellins in the promotion of flowering of Arabidopsis under long photoperiods, Development, 139, 2198, 10.1242/dev.077164 Procko, 2014, Cotyledon-generated auxin is required for shade-induced hypocotyl growth in Brassica rapa, Plant Physiol., 165, 10.1104/pp.114.241844 Raven, 2014, Speedy small stomata?, J. Exp. Bot., 65, 1415, 10.1093/jxb/eru032 Rizzini, 2011, Perception of UV-B by the Arabidopsis UVR8, Protein Sci., 332, 103 Sheerin, 2015, Light-activated phytochrome A and B interact with members of the SPA family to promote photomorphogenesis in Arabidopsis by reorganizing the COP1/SPA complex, Plant Cell, 27, 189, 10.1105/tpc.114.134775 Shi, 2013, HFR1 sequesters PIF1 to govern the transcriptional network underlying light-initiated seed germination in Arabidopsis, Plant Cell, 25, 3770, 10.1105/tpc.113.117424 Shin, 2009, Phytochromes promote seedling light responses by inhibiting four negatively acting phytochrome-interacting factors, Proc. Natl. Acad. Sci. USA, 106, 10.1073/pnas.0812219106 Shinomura, 1996, Action spectra for phytochrome A- and B-specific photoinduction of seed germination in Arabidopsis thaliana, Proc. Natl. Acad. Sci. USA, 93, 8129, 10.1073/pnas.93.15.8129 Shumbe, 2016, Singlet oxygen-induced cell death in Arabidopsis under high-light stress is controlled by OXI1 kinase, Plant Physiol., 170, 1757, 10.1104/pp.15.01546 Singhal, 2017, High light stress response and tolerance mechanism in plant, Interdiscip. J. Contemp. Res., 4 Song, 2014, Distinct roles of FKF1, Gigantea, and Zeitlupe proteins in the regulation of Constans stability in Arabidopsis photoperiodic flowering, Proc. Natl. Acad. Sci. USA, 111, 17672, 10.1073/pnas.1415375111 Staneloni, 2008, Abscisic acid, high-light, and oxidative stress down-regulate a photosynthetic gene via a promoter motif not involved in phytochrome-mediated transcriptional regulation, Mol. Plant, 1, 75, 10.1093/mp/ssm007 Steindler, 1999, Shade avoidance responses are mediated by the ATHB-2 HD-Zip protein, a negative regulator of gene expression, Development, 126, 4235, 10.1242/dev.126.19.4235 Stephenson, 2009, PIF3 is a repressor of chloroplast development, Proc. Natl. Acad. Sci. USA, 106, 7654, 10.1073/pnas.0811684106 Suetsugu, 2013, Evolution of three LOV blue light receptor families in green plants and photosynthetic stramenopiles: phototropin, ZTL/FKF1/LKP2 and aureochrome, Plant Cell Physiol., 54, 8, 10.1093/pcp/pcs165 Sun, 2010, Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis, Dev. Cell, 19, 765, 10.1016/j.devcel.2010.10.010 Suzuki, 2015, Ultra-fast alterations in mRNA levels uncover multiple players in light stress acclimation in plants, Plant J., 84, 760, 10.1111/tpj.13039 Sweere, 2001, Interaction of the response regulator ARR4 with phytochrome B in modulating red light signaling, Science, 294, 1108, 10.1126/science.1065022 Takahashi, 2011, Photoprotection in plants: a new light on photosystem II damage, Trends Plant Sci., 16, 53, 10.1016/j.tplants.2010.10.001 Tao, 2008, Rapid synthesis of auxin via a new tryptophan dependent pathway is required for shade avoidance in plants, Cell, 133, 10.1016/j.cell.2008.01.049 Valverde, 2004, Photoreceptor regulation of CONSTANS protein in photoperiodic flowering, Science, 303, 1003, 10.1126/science.1091761 Vandenbussche, 2007, HY5 is a point of convergence between cryptochrome and cytokinin signalling pathways in Arabidopsis thaliana, Plant J., 49, 428, 10.1111/j.1365-313X.2006.02973.x Vandenbussche, 2014, Photoreceptor-mediated bending towards UV-B in Arabidopsis, Mol. Plant, 7, 10.1093/mp/ssu039 Vestergaard, 2012, Intracellular signaling by diffusion: can waves of hydrogen peroxide transmit intracellular information in plant cells?, Front. Plant Sci., 3, 1, 10.3389/fpls.2012.00295 Walters, 2005, Towards an understanding of photosynthetic acclimation, J. Exp. Bot., 56, 435, 10.1093/jxb/eri060 Wang, 2015, Phytochrome signaling time to tighten up the loose ends, Mol. Plant, 8, 540, 10.1016/j.molp.2014.11.021 Wang, 2012, Brassinosteroid signaling network and regulation of photomorphogenesis, Annu. Rev. Genet., 46, 701, 10.1146/annurev-genet-102209-163450 Willige, 2013, D6PK AGCVIII kinases are required for auxin transport and phototropic hypocotyl bending in Arabidopsis, Plant Cell, 25, 1674, 10.1105/tpc.113.111484 Willige, 2007, The DELLA domain of GA INSENSITIVE mediates the interaction with the GA INSENSITIVE DWARF1A gibberellin receptor of Arabidopsis, Plant Cell, 19, 1209, 10.1105/tpc.107.051441 Wilson, 1992, Gibberellin is required for flowering in Arabidopsis thaliana under short days, Plant Physiol., 100, 403, 10.1104/pp.100.1.403 Woodson, 2019, Chloroplast stress signals: regulation of cellular degradation and chloroplast turnover, Curr. Opin. Plant Biol., 52, 30, 10.1016/j.pbi.2019.06.005 Wu, 2018, Leaf area and photosynthesis of newly emerged trifoliolate leaves are regulated by mature leaves in soybean, J. Plant Res., 131, 671, 10.1007/s10265-018-1027-8 Wu, 2017, Shade inhibits leaf size by controlling cell proliferation and enlargement in soybean, Sci. Rep., 7, 9259, 10.1038/s41598-017-10026-5 Wu, 2016, Responses to shade and subsequent recovery of soya bean in maize-soya bean relay strip intercropping, Plant Prod. Sci., 15, 1 Yang, 2018, Auxin-to-gibberellin ratio as a signal for light intensity and quality in regulating soybean growth and matter partitioning, Front Plant Sci., 9, 56, 10.3389/fpls.2018.00056 Yang, 2018, Effect of interactions between light intensity and red-to- far-red ratio on the photosynthesis of soybean leaves under shade condition, Environ. Exp. Bot., 150, 79, 10.1016/j.envexpbot.2018.03.008 Yang, 2014, Growth of soybean seedlings in relay strip intercropping systems in relation to light quantity and red: far-red ratio, Field Crop Res., 155, 245, 10.1016/j.fcr.2013.08.011 Yang, 2015, RNA-seq analysis reveals the role of red light in resistance against Pseudomonas syringae pv. tomato DC3000 in tomato plants, BMC Genom., 16, 120, 10.1186/s12864-015-1228-7 Yang, 2017, The effect of season-long temperature increases on rice cultivars grown in the central and southern regions of China, Front. Plant Sci., 8, 1908, 10.3389/fpls.2017.01908 Yu, 2012, Gibberellin regulates the Arabidopsis floral transition through miR156-targeted SQUAMOSA PROMOTER BINDING-LIKE transcription factors, Plant Cell, 24, 10.1105/tpc.112.101014 Yu, 2011, A brassinosteroid transcriptional network revealed by genome‐wide identification of BESI target genes in Arabidopsis thaliana, Plant J., 65, 634, 10.1111/j.1365-313X.2010.04449.x Zhong, 2012, A molecular framework of light-controlled phytohormone action in Arabidopsis, Curr. Biol., 22, 1530, 10.1016/j.cub.2012.06.039 Zhong, 2009, EIN3/EIL1 cooperate with PIF1 to prevent photooxidation and to promote greening of Arabidopsis seedlings, Proc. Natl. Acad. Sci. USA, 106, 21431, 10.1073/pnas.0907670106 Zhou, 2014, H2O2 mediates the crosstalk of brassinosteroid and abscisic acid in tomato responses to heat and oxidative stresses, J. Exp. Bot., 65, 4371, 10.1093/jxb/eru217 Zhu, 2015, CUL4 forms an E3 ligase with COP1 and SPA to promote light-induced degradation of PIF1, Nat. Commun., 6, 7245, 10.1038/ncomms8245 Zourelidou, 2014, Auxin efflux by PINFORMED proteins is activated by two different protein kinases, D6 PROTEIN KINASE and PINOID, eLife, 3, 10.7554/eLife.02860 Zuo, 2011, Blue light-dependent interaction of CRY2 with SPA1 regulates COP1 activity and floral initiation in Arabidopsis, Curr. Biol., 21, 841, 10.1016/j.cub.2011.03.048