The Unicellular Ancestry of Animal Development

Developmental Cell - Tập 7 - Trang 313-325 - 2004
Nicole King1
1Department of Molecular and Cell Biology and Department of Integrative Biology, University of California, Berkeley, 142 Life Sciences Addition, #3200, Berkeley, CA 94720 USA

Tài liệu tham khảo

Arabidopsis Genome Initiative, 2000, Analysis of the genome sequence of the flowering plant Arabidopsis thaliana, Nature, 408, 796, 10.1038/35048692 Atkins, 2000, Ancyromonadida, J. Mol. Evol, 51, 278, 10.1007/s002390010089 Ax, 1996 Baldauf, 1999, A search for the origins of animals and fungi, Am. Nat, 154, S178, 10.1086/303292 Baldauf, 2003, The deep roots of eukaryotes, Science, 300, 1703, 10.1126/science.1085544 Bartel, 2004, Micromanagers of gene expression, Nat. Rev. Genet, 5, 396, 10.1038/nrg1328 Bonner, 1998, The origins of multicellularity, Integr. Biol, 1, 27, 10.1002/(SICI)1520-6602(1998)1:1<27::AID-INBI4>3.0.CO;2-6 Boore, 1999, Animal mitochondrial genomes, Nucleic Acids Res, 27, 1767, 10.1093/nar/27.8.1767 Boraas, 1998, Phagotrophy by a flagellate selects for colonial prey, Evol. Ecol, 12, 153, 10.1023/A:1006527528063 Borchiellini, 1998, Phylogenetic analysis of the Hsp70 sequences reveals the monophyly of Metazoa and specific phylogenetic relationships between animals and fungi, Mol. Biol. Evol, 15, 647, 10.1093/oxfordjournals.molbev.a025968 Boute, 1996, Type IV collagen in sponges, the missing link in basement membrane ubiquity, Biol. Cell, 88, 37, 10.1016/S0248-4900(97)86829-3 Brooke, 2003, The evolution of multicellularity and early animal genomes, Curr. Opin. Genet. Dev, 13, 599, 10.1016/j.gde.2003.09.002 Brower, 1997, Molecular evolution of integrins, Proc. Natl. Acad. Sci. USA, 94, 9182, 10.1073/pnas.94.17.9182 Burger, 2003, Unique mitochondrial genome architecture in unicellular relatives of animals, Proc. Natl. Acad. Sci. USA, 100, 892, 10.1073/pnas.0336115100 Buss, 1983, Evolution, development, and the units of selection, Proc. Natl. Acad. Sci. USA, 80, 1387, 10.1073/pnas.80.5.1387 Buss, 1987 Carrington, 2003, Role of microRNAs in plant and animal development, Science, 301, 336, 10.1126/science.1085242 Carroll, 2000, Endless forms, Cell, 101, 577, 10.1016/S0092-8674(00)80868-5 Carroll, 2001, Chance and necessity, Nature, 409, 1102, 10.1038/35059227 Cavalier-Smith, 1991, Cell diversification in heterotrophic flagellates, 113 Cavalier-Smith, 1996, Corallochytrium, an enigmatic non-flagellate protozoan related to choanoflagellates, Eur. J. Protistol, 32, 306, 10.1016/S0932-4739(96)80053-8 Cavalier-Smith, 2003, Phylogeny of choanozoa, apusozoa, and other protozoa and early eukaryote megaevolution, J. Mol. Evol, 56, 540, 10.1007/s00239-002-2424-z Cavalier-Smith, 1996, Sponge phylogeny, animal monophyly, and the origin of the nervous system, Can. J. Zool, 74, 2031, 10.1139/z96-231 Copley, 1999, Protein families in multicellular organisms, Curr. Opin. Struct. Biol, 9, 408, 10.1016/S0959-440X(99)80055-4 Coutinho, 2003, Early steps in the evolution of multicellularity, Mech. Dev, 120, 429, 10.1016/S0925-4773(03)00007-8 Darnell, 1997, Phosphotyrosine signaling and the single cell:metazoan boundary, Proc. Natl. Acad. Sci. USA, 94, 11767, 10.1073/pnas.94.22.11767 Exposito, 2002, Evolution of collagens, Anat. Rec, 268, 302, 10.1002/ar.10162 Fey, 2002, SadA, a novel adhesion receptor in Dictyostelium, J. Cell Biol, 159, 1109, 10.1083/jcb.200206067 Garrone, 1998, Evolution of metazoan collagens, Prog. Mol. Subcell. Biol, 21, 119, 10.1007/978-3-642-72236-3_6 Gortz, 1999, Intra- and intercellular communication systems in ciliates, Naturwissenschaften, 86, 422, 10.1007/s001140050646 Gray, 1999, Mitochondrial evolution, Science, 283, 1476, 10.1126/science.283.5407.1476 Grimson, 2000, Adherens junctions and beta-catenin-mediated cell signalling in a non-metazoan organism, Nature, 408, 727, 10.1038/35047099 Gundacker, 2001, Isolation and cloning of a C-type lectin from the hexactinellid sponge Aphrocallistes vastus, Glycobiology, 11, 21, 10.1093/glycob/11.1.21 Herr, 1999, Phylogenetic analysis of Rhinosporidium seeberi's 18S small-subunit ribosomal DNA groups this pathogen among members of the protoctistan Mesomycetozoa clade, J. Clin. Microbiol, 37, 2750, 10.1128/JCM.37.9.2750-2754.1999 Holland, 1999, Gene duplication, Semin. Cell Dev. Biol, 10, 541, 10.1006/scdb.1999.0335 Hunter, 1985, Protein-tyrosine kinases, Annu. Rev. Biochem, 54, 897, 10.1146/annurev.bi.54.070185.004341 Hutter, 2000, Conservation and novelty in the evolution of cell adhesion and extracellular matrix genes, Science, 287, 989, 10.1126/science.287.5455.989 Hynes, 2000, The evolution of cell adhesion, J. Cell Biol, 150, F89, 10.1083/jcb.150.2.F89 James-Clark, 1868, On the spongiae ciliatae as infusoria flagellata; or observations on the structure, animality, and relationship of Leucosolenia botryoides, Annals and Magazine of Natural History, 1, 133, 10.1080/00222936808695657 Kaiser, 2001, Building a multicellular organism, Annu. Rev. Genet, 35, 103, 10.1146/annurev.genet.35.102401.090145 Karpov, 1998, Cytoskeleton structure and composition in choanoflagellates, J. Eukaryot. Microbiol, 45, 361, 10.1111/j.1550-7408.1998.tb04550.x Kawata, 1997, SH2 signaling in a lower eukaryote, Cell, 89, 909, 10.1016/S0092-8674(00)80276-7 Kazan, 2003, Alternative splicing and proteome diversity in plants, Trends Plant Sci, 8, 468, 10.1016/j.tplants.2003.09.001 King, 2001, A receptor tyrosine kinase from choanoflagellates, Proc. Natl. Acad. Sci. USA, 98, 15032, 10.1073/pnas.261477698 King, 2003, Evolution of key cell signaling and adhesion protein families predates animal origins, Science, 301, 361, 10.1126/science.1083853 Knoll, 2003 Knoll, 1999, Early animal evolution, Science, 284, 2129, 10.1126/science.284.5423.2129 Kumar, 1996, Evolutionary relationships of eukaryotic kingdoms, J. Mol. Evol, 42, 183, 10.1007/BF02198844 Kusch, 1999, Self-recognition as the original function of an amoeban defense-inducing kairomone, Ecology, 80, 715, 10.1890/0012-9658(1999)080[0715:SRATOF]2.0.CO;2 Lang, 1999, Mitochondrial genome evolution and the origin of eukaryotes, Annu. Rev. Genet, 33, 351, 10.1146/annurev.genet.33.1.351 Lang, 2002, The closest unicellular relatives of animals, Curr. Biol, 12, 1773, 10.1016/S0960-9822(02)01187-9 Leadbeater, 2001, Evolution of animals—choanoflagellates and sponges, Water and Atmosphere, 9, 9 Levine, M., and Tjian, R. (2002). Transcription and the evolutionary diversification of the metazoa. Leys, 2003, The significance of syncytial tissues for the position of the hexactinellida in the metazoa, Integr. Comp. Biol, 43, 19, 10.1093/icb/43.1.19 Long, 2001, Evolution of novel genes, Curr. Opin. Genet. Dev, 11, 673, 10.1016/S0959-437X(00)00252-5 Lundin, 1999, Gene duplications in early metazoan evolution, Semin. Cell Dev. Biol, 10, 523, 10.1006/scdb.1999.0333 Lynch, 2000, The evolutionary fate and consequences of duplicate genes, Science, 290, 1151, 10.1126/science.290.5494.1151 Lyons, 1973, Evolutionary implications of collar cell ectoderm in a coral planula, Nature, 245, 50, 10.1038/245050a0 Maldonado, 2004, Choanoflagellates, choanocytes, and animal multicellularity, Invertebr. Biol, 123, 1, 10.1111/j.1744-7410.2004.tb00138.x Maniatis, 2002, Alternative pre-mRNA splicing and proteome expansion in metazoans, Nature, 418, 236, 10.1038/418236a Margulis, 1981 Medina, 2001, Evaluating hypotheses of basal animal phylogeny using complete sequences of large and small subunit rRNA, Proc. Natl. Acad. Sci. USA, 98, 9707, 10.1073/pnas.171316998 Medina, 2003, Phylogeny of Opisthokonta and the evolution of multicellularity and complexity in Fungi and Metazoa, Int. J. Astrobiology, 2, 203, 10.1017/S1473550403001551 Mehl, 1991, The presence of flagellar vanes in choanomeres of porifera and their possible phylogenetic implications, Zeitschrift Fur Zoologische Systematik Und Evolutionsforschung, 29, 312, 10.1111/j.1439-0469.1991.tb00676.x Mendoza, 2002, The Class Mesomycetozoea, Annu. Rev. Microbiol, 56, 314, 10.1146/annurev.micro.56.012302.160950 Michod, 2003, On the reorganization of fitness during evolutionary transitions in individuality, Integ Comp Biol, 43, 64, 10.1093/icb/43.1.64 Mollenbeck, 2002, Identification and characterization of a pheromone 2 specific binding protein of Euplotes octocarinatus, Eur. J. Protistol, 37, 391, 10.1078/0932-4739-00804 Morris, 1993, The developmental role of the extracellular matrix suggests a monophyletic origin of the kingdom Animalia, Evolution, 47, 152, 10.2307/2410125 Muller, 1999, Gene structure and function of tyrosine kinases in the marine sponge Geodia cydonium, Gene, 238, 179, 10.1016/S0378-1119(99)00226-7 Muller, 2001, Contribution of sponge genes to unravel the genome of the hypothetical ancestor of Metazoa (Urmetazoa), Gene, 276, 161, 10.1016/S0378-1119(01)00669-2 Ngo, 1998, Double-stranded RNA induces mRNA degradation in Trypanosoma brucei, Proc. Natl. Acad. Sci. USA, 95, 14687, 10.1073/pnas.95.25.14687 Nielsen, 1995 Norrevang, 1970, On the occurrence and structure of choanocyte-like cells in some echinoderms, Acta Zool, 51, 249, 10.1111/j.1463-6395.1970.tb00436.x Ono, 1999, Multiple protein tyrosine phosphatases in sponges and explosive gene duplication in the early evolution of animals before the parazoan-eumetazoan split, J. Mol. Evol, 48, 654, 10.1007/PL00006509 Ortenzi, 2000, The autocrine mitogenic loop of the ciliate Euplotes raikovi, Mol. Biol. Cell, 11, 1445, 10.1091/mbc.11.4.1445 Patthy, 1999, Genome evolution and the evolution of exon-shuffling—a review, Gene, 238, 103, 10.1016/S0378-1119(99)00228-0 Peters-Regehr, 1997, Primary structure and origin of a predator released protein that induces defensive morphological changes in Euplotes, Eur. J. Protistol, 33, 389, 10.1016/S0932-4739(97)80050-8 Philippe, 2004, Phylogenomics of eukaryotes, Mol. Biol. Evol, 9, 1740, 10.1093/molbev/msh182 Porter, 2003, Vase-shaped microfossils from the Neoproterozoic Chuar Group, Grand Canyon, J. Paleontol, 77, 409, 10.1017/S0022336000044140 Prince, 2002, The Hox Paradox, Dev. Biol, 249, 1, 10.1006/dbio.2002.0745 Ragan, 1996, A novel clade of protistan parasites near the animal-fungal divergence, Proc. Natl. Acad. Sci. USA, 93, 11907, 10.1073/pnas.93.21.11907 Ragan, 2003, Are Ichthyosporea animals or fungi? Bayesian phylogenetic analysis of elongation factor 1alpha of Ichthyophonus irregularis, Mol. Phylogenet. Evol, 29, 550, 10.1016/S1055-7903(03)00134-9 Rieger, 1998, The evolution of the lower metazoa, 21 Rokas, 2003, Conflicting phylogenetic signals at the base of the metazoan tree, Evol. Dev, 5, 346, 10.1046/j.1525-142X.2003.03042.x Rokas, 2003, Genome-scale approaches to resolving incongruence in molecular phylogenies, Nature, 425, 798, 10.1038/nature02053 Rubin, 2000, Comparative genomics of the eukaryotes, Science, 287, 2204, 10.1126/science.287.5461.2204 Sakaguchi, 2001, Involvement of a 40-kDa glycoprotein in food recognition, prey capture, and induction of phagocytosis in the protozoon Actinophrys sol, Protist, 152, 33, 10.1078/1434-4610-00041 Sankoff, 2001, Gene and genome duplication, Curr. Opin. Genet. Dev, 11, 681, 10.1016/S0959-437X(00)00253-7 Schutze, 1999, Evolutionary relationships of Metazoa within the eukaryotes based on molecular data from Porifera, Proc. R. Soc. Lond. B. Biol. Sci, 266, 63, 10.1098/rspb.1999.0605 Seack, 1999, Promoter and exon-intron structure of the protein kinase C gene from the marine sponge Geodia cydonium, Biochim. Biophys. Acta, 1444, 241, 10.1016/S0167-4781(98)00275-9 Snell, 2001, Hsp70 sequences indicate that choanoflagellates are closely related to animals, Curr. Biol, 11, 967, 10.1016/S0960-9822(01)00275-5 Sperling, 2002, Random sequencing of Paramecium somatic DNA, Eukaryot. Cell, 1, 341, 10.1128/EC.1.3.341-352.2002 Stanley, 1973, Ecological theory for sudden origin of multicellular life in Late Precambrian, Proc. Natl. Acad. Sci. USA, 70, 1486, 10.1073/pnas.70.5.1486 Suga, 1999, Extensive gene duplication in the early evolution of animals before the parazoan-eumetazoan split demonstrated by G proteins and protein tyrosine kinases from sponge and hydra, J. Mol. Evol, 48, 646, 10.1007/PL00006508 Suga, 2001, Sponge homologs of vertebrate protein tyrosine kinases and frequent domain shufflings in the early evolution of animals before the parazoan-eumetazoan split, Gene, 280, 195, 10.1016/S0378-1119(01)00784-3 Sugiura, 2001, Identification, characterization, and complete amino acid sequence of the conjugation-inducing glycoprotein (blepharmone) in the ciliate Blepharisma japonicum, Proc. Natl. Acad. Sci. USA, 98, 14446, 10.1073/pnas.221457698 Szathmary, 1995, The major evolutionary transitions, Nature, 374, 227, 10.1038/374227a0 Tomley, 2001, Etmic4, Int. J. Parasitol, 31, 1303, 10.1016/S0020-7519(01)00255-7 Toth, 2004, Marine dinoflagellates show induced life-history shifts to escape parasite infection in response to water-borne signals, Proc. R. Soc. Lond. B. Biol. Sci, 271, 733, 10.1098/rspb.2003.2654 Villalobo, 2003, Cysteine proteases and cell differentiation, Eukaryot. Cell, 2, 1234, 10.1128/EC.2.6.1234-1245.2003 Wainright, 1993, Monophyletic origins of the Metazoa, Science, 260, 340, 10.1126/science.8469985 Watkins, 1999, Partial sequence of a sponge mitochondrial genome reveals sequence similarity to Cnidaria in cytochrome oxidase subunit II and the large ribosomal RNA subunit, J. Mol. Evol, 48, 542, 10.1007/PL00006497 Weiss, 1995, A cooperative model for receptor recognition and cell adhesion, Proc. Natl. Acad. Sci. USA, 92, 10172, 10.1073/pnas.92.22.10172 Wimmer, 1999, Origin of the integrin-mediated signal transduction. Functional studies with cell cultures from the sponge Suberites domuncula, Eur. J. Biochem, 260, 156, 10.1046/j.1432-1327.1999.00146.x Wolpert, 1992, Gastrulation and the evolution of development, Dev. Suppl, 7–13 Wolpert, 1994, The evolutionary origin of development, Dev. Suppl, 79–84 Woollacott, 1995, Flagellar basal apparatus and its utility in phylogenetic analyses of the porifera, J. Morphol, 226, 247, 10.1002/jmor.1052260302 Zettler, 2001, The nucleariid amoebae, J. Eukaryot. Microbiol, 48, 293, 10.1111/j.1550-7408.2001.tb00317.x