Cryptic Pol II Transcripts Are Degraded by a Nuclear Quality Control Pathway Involving a New Poly(A) Polymerase

Allmang, 1999, Functions of the exosome in rRNA, snoRNA and snRNA synthesis, EMBO J., 18, 5399, 10.1093/emboj/18.19.5399

Allmang, 1999, The yeast exosome and human PM-Scl are related complexes of 3′→5′ exonucleases, Genes Dev., 13, 2148, 10.1101/gad.13.16.2148

Aloy, 2002, A complex prediction: three-dimensional model of the yeast exosome, EMBO Rep., 3, 628, 10.1093/embo-reports/kvf135

Bousquet-Antonelli, 2000, Identification of a regulated pathway for nuclear pre-mRNA turnover, Cell, 102, 765, 10.1016/S0092-8674(00)00065-9

Castano, 1996, A novel family of TRF (DNA topoisomerase I-related function) genes required for proper nuclear segregation, Nucleic Acids Res., 24, 2404, 10.1093/nar/24.12.2404

Das, 2003, Degradation of normal mRNA in the nucleus of Saccharomyces cerevisiae, Mol. Cell. Biol., 23, 5502, 10.1128/MCB.23.16.5502-5515.2003

de la Cruz, 1998, Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3′ end formation of 5.8S rRNA in Saccharomyces cerevisiae, EMBO J., 17, 1128, 10.1093/emboj/17.4.1128

Dreyfus, 2002, The poly(A) tail of mRNAs: bodyguard in eukaryotes, scavenger in bacteria, Cell, 111, 611, 10.1016/S0092-8674(02)01137-6

Egyhazi, 1976, Quantitation of turnover and export to the cytoplasm of hnRNA transcribed in the Balbiani rings, Cell, 7, 507, 10.1016/0092-8674(76)90201-4

Fleischmann, 2004, Polyadenylation of ribosomal RNA by Candida albicans also involves the small subunit, BMC Mol. Biol., 5, 17, 10.1186/1471-2199-5-17

Gari, 1997, A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae, Yeast, 13, 837, 10.1002/(SICI)1097-0061(199707)13:9<837::AID-YEA145>3.0.CO;2-T

Ho, 2002, Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry, Nature, 415, 180, 10.1038/415180a

Huh, 2003, Global analysis of protein localization in budding yeast, Nature, 425, 686, 10.1038/nature02026

Inoue, 2000, Novel RING finger proteins, Air1p and Air2p, interact with Hmt1p and inhibit the arginine methylation of Npl3p, J. Biol. Chem., 275, 32793, 10.1074/jbc.M004560200

Ito, 2001, A comprehensive two-hybrid analysis to explore the yeast protein interactome, Proc. Natl. Acad. Sci. USA, 98, 4569, 10.1073/pnas.061034498

Johnson, 1997, Rat1p and Xrn1p are functionally interchangeable exoribonucleases that are restricted to and required in the nucleus and cytoplasm, respectively, Mol. Cell. Biol., 17, 6122, 10.1128/MCB.17.10.6122

Johnson, 2005, Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments, Trends Genet., 21, 93, 10.1016/j.tig.2004.12.009

Kadaba, 2004, Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae, Genes Dev., 18, 1227, 10.1101/gad.1183804

Keller, 1997, A comparison of mammalian and yeast pre-mRNA 3′-end processing, Curr. Opin. Cell Biol., 9, 329, 10.1016/S0955-0674(97)80004-X

Kim, 2004, The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II, Nature, 432, 517, 10.1038/nature03041

Krogan, 2004, High-definition macromolecular composition of yeast RNA-processing complexes, Mol. Cell, 13, 225, 10.1016/S1097-2765(04)00003-6

Kuai, 2004, Polyadenylation of rRNA in Saccharomyces cerevisiae, Proc. Natl. Acad. Sci. USA, 101, 8581, 10.1073/pnas.0402888101

Kwak, 2004, Mammalian GLD-2 homologs are poly(A) polymerases, Proc. Natl. Acad. Sci. USA, 101, 713, 10.1073/pnas.0400779101

LaCava, 2005, RNA degradation by the exosome is promoted by a nuclear polyadenylation complex, Cell, 121, 10.1016/j.cell.2005.04.029

Liang, 1996, A DEAD-box-family protein is required for nucleocytoplasmic transport of yeast mRNA, Mol. Cell. Biol., 16, 5139, 10.1128/MCB.16.9.5139

Libri, 2002, Interactions between mRNA export commitment, 3′-end quality control, and nuclear degradation, Mol. Cell. Biol., 22, 8254, 10.1128/MCB.22.23.8254-8266.2002

Mitchell, 2000, Musing on the structural organization of the exosome complex, Nat. Struct. Biol., 7, 843, 10.1038/82817

Nonet, 1987, Eucaryotic RNA polymerase conditional mutant that rapidly ceases mRNA synthesis, Mol. Cell. Biol., 7, 1602

Petfalski, 1998, Processing of the precursors to small nucleolar RNAs and rRNAs requires common components, Mol. Cell. Biol., 18, 1181, 10.1128/MCB.18.3.1181

Proudfoot, 2002, Polyadenylation: a tail of two complexes, Curr. Biol., 12, R855, 10.1016/S0960-9822(02)01353-2

Rigaut, 1999, A generic protein purification method for protein complex characterization and proteome exploration, Nat. Biotechnol., 17, 1030, 10.1038/13732

Ruusala, 1984, Hyper-accurate ribosomes inhibit growth, EMBO J., 3, 2575, 10.1002/j.1460-2075.1984.tb02176.x

Schroeder, 2000, Dynamic association of capping enzymes with transcribing RNA polymerase II, Genes Dev., 14, 2435, 10.1101/gad.836300

Schurer, 2001, This is the end: processing, editing and repair at the tRNA 3′-terminus, Biol. Chem., 382, 1147, 10.1515/BC.2001.144

Symmons, 2002, Running rings around RNA: a superfamily of phosphate-dependent RNases, Trends Biochem. Sci., 27, 11, 10.1016/S0968-0004(01)01999-5

Torchet, 2002, Processing of 3′-extended read-through transcripts by the exosome can generate functional mRNAs, Mol. Cell, 9, 1285, 10.1016/S1097-2765(02)00544-0

van Hoof, 2000, Yeast exosome mutants accumulate 3′-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs, Mol. Cell. Biol., 20, 441, 10.1128/MCB.20.2.441-452.2000

Velculescu, 1997, Characterization of the yeast transcriptome, Cell, 88, 243, 10.1016/S0092-8674(00)81845-0

Wang, 2000, Pol kappa: A DNA polymerase required for sister chromatid cohesion, Science, 289, 774, 10.1126/science.289.5480.774

West, 2004, Human 5′→3′ exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites, Nature, 432, 522, 10.1038/nature03035