Soil enzyme activities, microbial communities, and carbon and nitrogen availability in organic agroecosystems across an intensively-managed agricultural landscape

Soil Biology and Biochemistry - Tập 68 - Trang 252-262 - 2014
Timothy M. Bowles1, Veronica Acosta-Martínez2, Francisco Calderón3, Louise E. Jackson4
1Department of Land, Air and Water Resources, University of California – Davis, Davis CA 95616 (USA)
2USDA-ARS, Cropping Systems Research Laboratory, Wind Erosion and Water Conservation Unit, Lubbock TX 79415 (USA)
3USDA-ARS, Central Great Plains Research Station, 40335 County Road GG, Akron, CO 80720, USA
4Department of Land, Air and Water Resources, University of California Davis, Davis, CA 95616, USA

Tài liệu tham khảo

Acosta-Martínez, 2007, Enzyme activities as affected by soil properties and land use in a tropical watershed, Appl. Soil Ecol., 35, 35, 10.1016/j.apsoil.2006.05.012 Acosta-Martínez, 2008, Microbial communities and enzymatic activities under different management in semiarid soils, Appl. Soil Ecol., 38, 249, 10.1016/j.apsoil.2007.10.012 Ajwa, 1999, Changes in enzyme activities and microbial biomass of tallgrass prairie soil as related to burning and nitrogen fertilization, Soil Biol. Biochem., 31, 769, 10.1016/S0038-0717(98)00177-1 Allison, 2007, Changes in enzyme activities and soil microbial community composition along carbon and nutrient gradients at the Franz Josef chronosequence, New Zealand, Soil Biol. Biochem., 39, 1770, 10.1016/j.soilbio.2007.02.006 Allison, 2011, Evolutionary-economic principles as regulators of soil enzyme production and ecosystem function, 229 Aranda, 2011, Effect of soil type and management (organic vs. conventional) on soil organic matter quality in olive groves in a semi-arid environment in Sierra Mágina Natural Park (S Spain), Geoderma, 164, 54, 10.1016/j.geoderma.2011.05.010 Bandick, 1999, Field management effects on soil enzyme activities, Soil Biol. Biochem., 31, 1471, 10.1016/S0038-0717(99)00051-6 Bernard, 2012, Compost, rapeseed rotation, and biocontrol agents significantly impact soil microbial communities in organic and conventional potato production systems, Appl. Soil Ecol., 52, 29, 10.1016/j.apsoil.2011.10.002 Blanchet, 2008, Forward selection of explanatory variables, Ecology, 89, 2623, 10.1890/07-0986.1 Borcard, 1992, Partialling out the spatial component of ecological variation, Ecology, 73, 1045, 10.2307/1940179 Borcard, 2011, Canonical ordination, 153 Bossio, 1998, Determinants of soil microbial communities: effects of agricultural management, season, and soil type on phospholipid fatty acid profiles, Microb. Ecol., 36, 1, 10.1007/s002489900087 Burger, 2003, Microbial immobilization of ammonium and nitrate in relation to ammonification and nitrification rates in organic and conventional cropping systems, Soil Biol. Biochem., 35, 29, 10.1016/S0038-0717(02)00233-X Burger, 2005, Microbial responses and nitrous oxide emissions during wetting and drying of organically and conventionally managed soil under tomatoes, Biol. Fertil. Soils, 42, 109, 10.1007/s00374-005-0007-z Burns, 2013, Soil enzymes in a changing environment: current knowledge and future directions, Soil Biol. Biochem., 58, 216, 10.1016/j.soilbio.2012.11.009 Cabrera, 1993, Alkaline persulfate oxidation for determining total nitrogen in microbial biomass extracts, Soil Sci. Soc. Am. J., 57, 1007, 10.2136/sssaj1993.03615995005700040021x Calderón, 2000, Microbial responses to simulated tillage in cultivated and uncultivated soils, Soil Biol. Biochem., 32, 1547, 10.1016/S0038-0717(00)00067-5 Carrera, 2007, Effects of cover crops, compost, and manure amendments on soil microbial community structure in tomato production systems, Appl. Soil Ecol., 37, 247, 10.1016/j.apsoil.2007.08.003 Cavigelli, 2013, Organic grain cropping systems to enhance ecosystem services, Renew. Agric. Food Syst., 28, 145, 10.1017/S1742170512000439 CCOF, 2011 CIMIS, 2013 Clark, 1998, Changes in soil chemical properties resulting from organic and low-input farming practices, Agron. J., 90, 662, 10.2134/agronj1998.00021962009000050016x Cleveland, 2007, C: N:P stoichiometry in soil: is there a “redfield ratio” for the microbial biomass?, Biogeochemistry, 85, 235, 10.1007/s10533-007-9132-0 Culman, 2010, Biodiversity is associated with indicators of soil ecosystem functions over a landscape gradient of agricultural intensification, Landsc. Ecol., 25, 1333, 10.1007/s10980-010-9511-0 Darnhofer, 2005, Converting or not converting to organic farming in Austria: farmer types and their rationale, Agric. Hum. Values, 22, 39, 10.1007/s10460-004-7229-9 Darnhofer, 2010, Conventionalisation of organic farming practices: from structural criteria towards an assessment based on organic principles. A review, Agron. Sustain. Develop., 30, 67, 10.1051/agro/2009011 de Vries, 2012, Plant–microbial linkages and ecosystem nitrogen retention: lessons for sustainable agriculture, Front. Ecol. Environ., 10, 425, 10.1890/110162 de Vries, 2012, Abiotic drivers and plant traits explain landscape-scale patterns in soil microbial communities, Ecol. Lett., 15, 1230, 10.1111/j.1461-0248.2012.01844.x Dick, 1988, Influence of long-term residue management on soil enzyme activities in relation to soil chemical properties of a wheat-fallow system, Biol. Fertil. Soils, 6, 159, 10.1007/BF00257667 Drinkwater, 1998, Legume-based cropping systems have reduced carbon and nitrogen losses, Nature, 396, 262, 10.1038/24376 Drinkwater, 1995, Fundamental differences between conventional and organic tomato agroecosystems in California, Ecol. Appl., 5, 1098, 10.2307/2269357 Eshel, 2004, Critical evaluation of the use of laser diffraction for particle-size distribution analysis, Soil Sci. Soc. Am. J., 68, 736, 10.2136/sssaj2004.7360 Fierer, 2009, Global patterns in belowground communities, Ecol. Lett., 12, 1238, 10.1111/j.1461-0248.2009.01360.x Foster, 1995, Soil nitrogen, 79 Frankenberger, 1991, Factors affecting L-asparaginase activity in soils, Biol. Fertil. Soils, 11, 1, 10.1007/BF00335825 Fraterrigo, 2006, Microbial community variation and its relationship with nitrogen mineralization in historically altered forests, Ecology, 87, 570, 10.1890/05-0638 Frossard, 2012, Disconnect of microbial structure and function: enzyme activities and bacterial communities in nascent stream corridors, ISME J., 6, 680, 10.1038/ismej.2011.134 García-Ruiz, 2008, Suitability of enzyme activities for the monitoring of soil quality improvement in organic agricultural systems, Soil Biol. Biochem., 40, 2137, 10.1016/j.soilbio.2008.03.023 Gardner, 2011, Soil rhizosphere microbial communities and enzyme activities under organic farming in Alabama, Diversity, 3, 308, 10.3390/d3030308 Gattinger, 2012, Enhanced top soil carbon stocks under organic farming, Proc. Natl. Acad. Sci. U. S. A., 109, 18226, 10.1073/pnas.1209429109 Giacometti, 2013, Chemical and microbiological soil quality indicators and their potential to differentiate fertilization regimes in temperate agroecosystems, Appl. Soil Ecol., 64, 32, 10.1016/j.apsoil.2012.10.002 Guthman, 2000, Raising organic: an agro-ecological assessment of grower practices in California, Agric. Hum. Values, 17, 257, 10.1023/A:1007688216321 Guthman, 2004 Jackson, 2011, Case study on potential agricultural responses to climate change in a California landscape, Climat. Change, 109, 407, 10.1007/s10584-011-0306-3 Jackson, 2012, Soil microbial-root and microbial–rhizosphere processes to increase nitrogen availability and retention in agroecosystems, Curr. Opin. Environ. Sustain., 4, 517, 10.1016/j.cosust.2012.08.003 Kallenbach, 2011, Controls over soil microbial biomass responses to carbon amendments in agricultural systems: a meta-analysis, Agric. Ecosyst. Environ., 144, 241, 10.1016/j.agee.2011.08.020 Kong, 2005, The relationship between carbon input, aggregation, and soil organic carbon stabilization in sustainable cropping systems, Soil Sci. Soc. Am. J., 69, 1078, 10.2136/sssaj2004.0215 Kong, 2011, Microbial community composition and carbon cycling within soil microenvironments of conventional, low-input, and organic cropping systems, Soil Biol. Biochem., 43, 20, 10.1016/j.soilbio.2010.09.005 Kramer, 2006, Reduced nitrate leaching and enhanced denitrifier activity and efficiency in organically fertilized soils, Proc. Natl. Acad. Sci. U. S. A., 103, 4522, 10.1073/pnas.0600359103 Lauber, 2008, The influence of soil properties on the structure of bacterial and fungal communities across land-use types, Soil Biol. Biochem., 40, 2407, 10.1016/j.soilbio.2008.05.021 Lazcano, 2008, Comparison of the effectiveness of composting and vermicomposting for the biological stabilization of cattle manure, Chemosphere, 72, 1013, 10.1016/j.chemosphere.2008.04.016 Mäder, 2002, Soil fertility and biodiversity in organic farming, Science, 296, 1694, 10.1126/science.1071148 Marriott, 2006, Qualitative and quantitative differences in particulate organic matter fractions in organic and conventional farming systems, Soil Biol. Biochem., 38, 1527, 10.1016/j.soilbio.2005.11.009 Marschner, 2003, Structure and function of the soil microbial community in a long-term fertilizer experiment, Soil Biol. Biochem., 35, 453, 10.1016/S0038-0717(02)00297-3 Minoshima, 2007, Soil food webs and carbon dynamics in response to conservation tillage in California, Soil Sci. Soc. Am. J., 71, 952, 10.2136/sssaj2006.0174 Miranda, 2001, A rapid, simple spectrophotometric method for simultaneous detection of nitrate and nitrite, Nitric Oxide: Biol. Chem., 5, 62, 10.1006/niox.2000.0319 Moeskops, 2010, Soil microbial communities and activities under intensive organic and conventional vegetable farming in West Java, Indonesia, Appl. Soil Ecol., 45, 112, 10.1016/j.apsoil.2010.03.005 Moeskops, 2012, The impact of exogenous organic matter on SOM contents and microbial soil quality, Pedobiologia, 55, 175, 10.1016/j.pedobi.2012.03.001 Oksanen, 2012 Olander, 2000, Regulation of soil phosphatase and chitinase activity by N and P availability, Biogeochemistry, 49, 175, 10.1023/A:1006316117817 Olsen, 1982, Phosphorus, vol. 9, 403 Parham, 2000, Detection, quantification and characterization of β-glucosaminidase activity in soil, Soil Biol. Biochem., 32, 1183, 10.1016/S0038-0717(00)00034-1 Paul, 2005, Contribution of α-amino N to extractable organic nitrogen (DON) in three soil types from the Scottish uplands, Soil Biol. Biochem., 37, 801, 10.1016/j.soilbio.2004.09.011 Peres-Neto, 2006, Variation partitioning of species data matrices: estimation and comparison of fractions, Ecology, 87, 2614, 10.1890/0012-9658(2006)87[2614:VPOSDM]2.0.CO;2 Piotrowska, 2012, Effects of catch crops cultivated for green manure and mineral nitrogen fertilization on soil enzyme activities and chemical properties, Geoderma, 189–190, 72, 10.1016/j.geoderma.2012.04.018 R Development Core Team, 2012 Reed, 2013, Microbial composition affects the functioning of estuarine sediments, ISME J., 7, 868, 10.1038/ismej.2012.154 Ros, 2009, Extractable and dissolved soil organic nitrogen – a quantitative assessment, Soil Biol. Biochem., 41, 1029, 10.1016/j.soilbio.2009.01.011 Saiya-Cork, 2002, The effects of long term nitrogen deposition on extracellular enzyme activity in an Acer saccharum forest soil, Soil Biol. Biochem., 34, 1309, 10.1016/S0038-0717(02)00074-3 Schafer, 1976, Influence of physical and mineralogical properties on swelling of soils in Yolo County, California, Soil Sci. Soc. Am. J., 40, 557, 10.2136/sssaj1976.03615995004000040029x Schimel, 2004, Nitrogen mineralization: challenges of a changing paradigm, Ecology, 85, 591, 10.1890/03-8002 Schipanski, 2012, Nitrogen fixation in annual and perennial legume-grass mixtures across a fertility gradient, Plant Soil, 357, 147, 10.1007/s11104-012-1137-3 Schutter, 2000, Comparison of fatty acid methyl ester (FAME) methods for characterizing microbial communities, Soil Sci. Soc. Am. J., 64, 1659, 10.2136/sssaj2000.6451659x Senwo, 1996, Aspartase activity of soils, Soil Sci. Soc. Am. J., 60, 1416, 10.2136/sssaj1996.03615995006000050018x Seufert, 2012, Comparing the yields of organic and conventional agriculture, Nature, 485, 229, 10.1038/nature11069 Sinsabaugh, 2005, Extracellular enzyme activities and soil organic matter dynamics for northern hardwood forests receiving simulated nitrogen deposition, Biogeochemistry, 75, 201, 10.1007/s10533-004-7112-1 Sinsabaugh, 2008, Stoichiometry of soil enzyme activity at global scale, Ecol. Lett., 11, 1252, 10.1111/j.1461-0248.2008.01245.x Smukler, 2008, Transition to large-scale organic vegetable production in the Salinas Valley, California, Agric. Ecosyst. Environ., 126, 168, 10.1016/j.agee.2008.01.028 Smukler, 2010, Biodiversity and multiple ecosystem functions in an organic farmscape, Agric. Ecosyst. Environ., 139, 80, 10.1016/j.agee.2010.07.004 Soil Survey Staff, Natural Resources Conservation Service, USDA, 2011 Stromberger, 2012, Distinct microbial and faunal communities and translocated carbon in Lumbricus terrestris drilospheres, Soil Biol. Biochem., 46, 155, 10.1016/j.soilbio.2011.11.024 Štursová, 2010, Effects of soil properties and management on the activity of soil organic matter transforming enzymes and the quantification of soil-bound and free activity, Plant and Soil, 338, 99, 10.1007/s11104-010-0296-3 Syswerda, 2012, Long-term nitrate loss along an agricultural intensity gradient in the Upper Midwest USA, Agric. Ecosyst. Environ., 149, 10, 10.1016/j.agee.2011.12.007 Tabatabai, 1994, Soil enzymes, 775 Tiemann, 2010, Indirect effects of nitrogen amendments on organic substrate quality increase enzymatic activity driving decomposition in a mesic grassland, Ecosystems, 14, 234, 10.1007/s10021-010-9406-6 Vance, 1987, An extraction method for measuring soil microbial biomass C, Soil Biol. Biochem., 19, 703, 10.1016/0038-0717(87)90052-6 Vasseur, 2013, The cropping systems mosaic: how does the hidden heterogeneity of agricultural landscapes drive arthropod populations?, Agric. Ecosyst. Environ., 166, 3, 10.1016/j.agee.2012.08.013 Wickham, 2009 Williams, 2013, Indicators of soil ecosystem services in conventional and organic arable fields along a gradient of landscape heterogeneity in southern Sweden, Appl. Soil Ecol., 65, 1, 10.1016/j.apsoil.2012.12.019 Wu, 1990, Measurement of soil microbial biomass C by fumigation–extraction: an automated procedure, Soil Biol. Biochem., 22, 1167, 10.1016/0038-0717(90)90046-3 Young-Mathews, 2010, Plant–soil biodiversity relationships and nutrient retention in agricultural riparian zones of the Sacramento Valley, California, Agrofor. Syst., 80, 41, 10.1007/s10457-010-9332-9 Yu, 2002, Contribution of amino compounds to dissolved organic nitrogen in forest soils, Biogeochemistry, 61, 173, 10.1023/A:1020221528515 Zelles, 1996, Fatty acid patterns of microbial phospholipids and lipopolysaccharides, 80 Zelles, 1999, Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: a review, Biol. Fertil. Soils, 29, 111, 10.1007/s003740050533