Diversity in the Oryza genus

Current Opinion in Plant Biology - Tập 6 - Trang 139-146 - 2003
Duncan A Vaughan1, H Morishima2, K Kadowaki1
1National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki, 305-8602, Japan
2Tokyo University of Agriculture, Funako 1737, Atsugi, Kanagawa 243-0034, Japan

Tài liệu tham khảo

Kellogg, 2001, Evolutionary history of grasses, Plant Physiol., 125, 1198, 10.1104/pp.125.3.1198 Launert, 1965, A survey of the genus Leersia in Africa, Senckenb. Biol., 46, 129 Tateoka, 1964, Notes of some grasses. XVI. Embryo structure of the genus Oryza in relation to their systematics, Am. J. Bot., 51, 539, 10.2307/2440283 Vaughan DA, Morishima H: Biosystematics of the genus Oryza. In Rice: Origin, History, Technology and Production. Edited by Wayne Smith C, Dilday RH. John Wiley and Sons, New York. 2003:27-65. Tateoka, 1963, Taxonomic studies of Oryza III. Key to the species and their enumeration, Bot. Mag. Tokyo, 76, 165, 10.15281/jplantres1887.76.165 Morishima H: Reports of the study-tours for investigation of wild and cultivated rice species. Parts I and II. 2002. Chang, 1985, Crop history and genetic conservation: rice a case study, Iowa State Uni. J. Res., 59, 425 International Rice Research Institute (IRRI): Rice germplasm. Collecting, preservation, use. Los Banos, Philippines: IRRI; 1991. Cai, 2002, QTL clusters reflect character associations in wild and cultivated rice, Theor. Appl. Genet., 104, 1217, 10.1007/s00122-001-0819-7 Xiong, 1999, Identification of genetic factors controlling domestication traits of rice using an F2 population of a cross between Oryza sativa and O. rufipogon, Theor. Appl. Genet., 98, 243, 10.1007/s001220051064 de Wit, 1981, Species concepts and systematics of domesticated cereals, Kulturpflanze, 29, 177, 10.1007/BF02014749 Oka HI: Origin of cultivated rice. Developments in Crop Science 14. Tokyo: Japan Scientific Societies Press; 1988. Baki BB, Chin DV, Mortimer M (Eds): Wild and Weedy Rice in Rice Ecosystems in Asia — a Review. Limited Proceedings No. 2. Los Banos, Philippines: International Rice Research Institute. 2000. Watanabe H, Vaughan DA, Tomooka N: Weedy rice complexes: case studies from Malaysia, Vietnam and Suriname. In Wild and Weedy Rice in Rice Ecosystems in Asia — a Review. Edited by Baki BB, Chin DV, Mortimer M. Limited proceedings No. 2. Los Banos, Philippines: International Rice Research Institute. 2000:25-34. Bres-Patry, 2001, Heredity and genetic mapping of domestication-related traits in a temperate japonica weedy rice, Theor. Appl. Genet., 102, 118, 10.1007/s001220051626 Aggarawal, 1997, Two new genomes in the Oryza complex identified on the basis of molecular divergence analysis using total genomic DNA hybridization, Mol. Gen. Genet., 249, 65 Wu, 1992, A novel repetitive DNA sequence in the genus Oryza, Theor. Appl. Genet., 84, 136, 10.1007/BF00223993 Yan, 1999, Visualization of Oryza eichingeri chromosomes in intergenomic hybrid plants from O. sativa × O. eichingeri via fluorescent in situ hybridization, Genome., 42, 48, 10.1139/gen-42-1-48 Dally, 1990, Chloroplast DNA diversity in wild and cultivated species in rice (Genus Oryza section Oryza). Cladistic-mutation and genetic distances analysis, Theor. Appl. Genet., 80, 209, 10.1007/BF00224389 Kanno, 1992, Comparative studies of the structure of chloroplast DNA from four species of Oryza: cloning and physical maps, Theor. Appl. Genet., 83, 791, 10.1007/BF00226699 Li, 2001, Differentiation and inter-genomic relationships among C, E and D genomes in the Oryza officinalis complex (Poaceae) as revealed by multicolor genomic in situ hybridization, Theor. Appl. Genet., 103, 197, 10.1007/s001220100562 Vaughan DA: Wild relatives of rice: genetic resources handbook. Los Banos, Philippines: International Rice Research Institute;1994. Shcherban, 2001, Diversity in the integrase coding domain of a gypsy-like retrotransposon among wild relatives in the Oryza officinalis complex, Genetica, 110, 43, 10.1023/A:1017597503230 Ge, 1999, Phylogeny of rice genomes with emphasis on origins of allotetraploid species, Proc. Natl. Acad. Sci. U.S.A., 96, 14400, 10.1073/pnas.96.25.14400 Jena, 1991, Restriction fragment length polymorphism analysis of CCDD genome species of the genus Oryza L., Plant Mol. Biol., 16, 831, 10.1007/BF00015075 Nayar, 1973, Origin and cytogenetics of rice, Adv. Genet., 17, 153, 10.1016/S0065-2660(08)60172-8 Cordesse, 1992, Genome specificity of rDNA spacer fragments from Oryza sativa L., Theor. Appl. Genet., 83, 864, 10.1007/BF00226709 Zhao, 1989, Genome-specific repetitive sequences in the genus Oryza, Theor. Appl. Genet., 78, 201, 10.1007/BF00288800 Morishima, 1992, Evolutionary studies in cultivated rice and its wild relatives, Oxford Surveys in Evolutionary Biology, 8, 135 Lu, 2002, Genetic differentiation of wild relatives of rice as assessed by RFLP analysis, Theor. Appl. Genet., 106, 101, 10.1007/s00122-002-1013-2 Ge, 1999, RAPD variation within and between natural populations of the wild rice Oryza rufipogon from China and Brazil, Heredity, 82, 638, 10.1046/j.1365-2540.1999.00516.x Sun, 2001, Comparison of the genetic diversity of common wild rice (Oryza rufipogon Griff.) and cultivated rice (O. sativa L.) using RFLP markers, Theor. Appl. Genet., 102, 157, 10.1007/s001220051631 Gao, 2000, Allozyme diversity and genetic structure of common wild rice Oryza rufipogon Griff. in China, Theor. Appl. Genet., 101, 494, 10.1007/s001220051508 Gao, 2000, Low levels of genetic diversity within populations and high differentiation among populations of a wild rice, Oryza granulata Nees et Arn. ex Watt. from China, Int. J. Plant. Sci., 161, 691, 10.1086/314289 Gao, 2001, High levels of genetic differentiation of Oryza officinalis Wall ex. Watt from China, J. Hered., 92, 511, 10.1093/jhered/92.6.511 Qian, 2001, Genetic variation within and among populations of a wild rice Oryza granulata from China detected by RAPD and ISSR markers, Theor. Appl. Genet., 102, 440, 10.1007/s001220051665 Xie, 2001, Clonality in wild rice (Oryza rufipogon, Poaceae) and its implications for conservation management, Am. J. Bot., 88, 1058, 10.2307/2657088 McIntyre, 1998, A rapid means of identifying wild rice species DNA using dot blots and genome-specific rDNA probes, Genome, 41, 391, 10.1139/gen-41-3-391 Ge, 2001, Rapid and reliable identification of rice genomes by RFLP analysis of PCR-amplified Adh genes, Genome, 44, 1136, 10.1139/gen-44-6-1136 Martin, 1997, The use of RAPD markers to facilitate the identification of Oryza species within germplasm collections, Genet. Res. Crop. Evol., 44, 175, 10.1023/A:1008678231467 Morishima H: Conservation and genetic characterisation of plant genetic resources. In Plant Genetic Resources: Characterisation and Evaluation. Tsukuba, Japan: MAFF; 1998:31-42. Ishii, 2000, Microsatellites and microsynteny in the chloroplast genomes of Oryza and eight other Gramineae species, Theor. Appl. Genet., 100, 1257, 10.1007/s001220051432 Kanazawa, 2000, The distribution of Stowaway transposable elements in AA genome species of wild rice, Theor. Appl. Genet., 101, 327, 10.1007/s001220051487 Zhang, 1998, Independent amplification of two classes of Tourists in some Oryza species, Genetica, 101, 145, 10.1023/A:1018328423736 Aggarwal, 1999, Phylogenetic relationships among Oryza species revealed by AFLP markers, Theor. Appl. Genet., 98, 1320, 10.1007/s001220051198 Joshi, 2000, Genetic diversity and phylogenetic relationship as revealed by inter simple sequence repeat (ISSR) polymorphism in the genus Oryza, Theor. Appl. Genet., 100, 1311, 10.1007/s001220051440 Iwamoto, 1999, A Tourist element in the 5′-flanking region of the catalase gene CatA reveals evolutionary relationships among Oryza species with various genome types, Mol. Gen. Genet., 262, 493, 10.1007/s004380051110 Heslop-Harrison, 2000, Comparative genome organization in plants: from sequence and markers to chromatin and chromosomes, Plant Cell, 12, 617, 10.1105/tpc.12.5.617 Brar, 1997, Alien introgression in rice, Plant Mol. Biol., 35, 35, 10.1023/A:1005825519998 Xiao, 1998, Identification of trait-improving quantitative trait loci alleles from wild rice relative, Oryza rufipogon, Genet., 150, 899, 10.1093/genetics/150.2.899 Brondani, 2001, Development and mapping of Oryza glumaepatula-derived microsatellite markers in the interspecific cross Oryza glumaepatula × O. sativa, Hereditas, 134, 59, 10.1111/j.1601-5223.2001.00059.x Juliano, 1998, Taxonomic status of Oryza glumaepatula Steud. I. Comparative morphological studies of New World diploids and Asian AA genome species, Genet Res. Crop. Evol., 45, 197, 10.1023/A:1008682316449 Naredo, 1998, Taxonomic status of Oryza glumaepatula Steud. II. Hybridization between New World diploids and AA genome species from Asia and Australia, Genet Res. Crop. Evol., 45, 205, 10.1023/A:1008634400519 Morishima, 1969, Phenetic similarity and phylogenetic relationships among strains of Oryza perennis, estimated by methods of numerical taxonomy, Evolution, 23, 429, 10.2307/2406698 International Rice Research Institute (IRRI): Safeguarding and Preservation of the Biodiversity of Rice Genepool [CD Rom]. Los Banos, Philippines: IRRI; 2000. Akimoto, 1998, Population genetic structure of rice O. glumaepatula distributed in the Amazon flood area influenced by its life-history traits, Mol. Ecol., 7, 1371, 10.1046/j.1365-294x.1998.00485.x Buso, 1998, Analysis of genetic variability of South American wild rice populations (Oryza glumaepatula) using isozymes and RAPD markers, Mol. Ecol., 7, 107, 10.1046/j.1365-294x.1998.00321.x Sobrizal, 1999, Development of Oryza glumaepatula introgression lines in rice, O. sativa L, Rice Genet Newsl., 16, 107 Sobrizal, 2000, Identification of a gene for male abortion in backcross progeny of Oryza sativa and Oryza glumaepatula, Rice Genet. Newsl., 17, 59 Ikeda, 1999, Hybrid weakness restoration gene (Rhw) for Oryza glumaepatula cytoplasm, Rice Genet. Newsl., 16, 62 Brondani, 2002, QTL mapping and introgression of yield related traits from Oryza glumaepatula to cultivated rice (Oryza sativa) using microsatellite markers, Theor. Appl. Genet., 104, 1192, 10.1007/s00122-002-0869-5 Akimoto M: Biolsystematics in the AA genome wild taxa of genus Oryza (O. sativa complex): a comparative study of morpho-physiological traits, isozymes and RFLPs of nuclear and organelle. 1999 Ph.D. Thesis, Hokkaido University. Doi, 2000, RFLP relationships of A-genome species in the genus Oryza, J. Fac. Agric. Kyushu Univ., 45, 83, 10.5109/24360 Shcherban, 2000, Isolation of a new retrotransposon-like DNA sequence and its use in analysis of diversity within the Oryza officinalis complex, Genetica, 108, 145, 10.1023/A:1004165903202 Yan, 1997, The transfer of brown plant hopper resistance from O. eichingeri to O. sativa, Chin. J. Genet., 24, 277 Sitch LA: Incompatibility barriers operating in crosses of Oryza sativa with related species and genera. In Gene Manipulation in Plant Improvement II, 19th Stadler Genetics Symposium. Edited by Gustafson JP. New York: Plenum Press; 1990:77-93. Yan, 2001, Characterization of euploid backcross progenies derived from interspecific hybrids between Oryza sativa and O. eichingeri by RFLP analysis and genomic in situ hybridization, Genome, 44, 86, 10.1139/gen-44-1-86 Jena, 1992, RFLP analysis of rice (Oryza sativa L.) introgression lines, Theor. Appl. Genet., 84, 608, 10.1007/BF00224159 Couzin, 2002, NSF’s ark draws alligators, algae, and wasps, Science, 297, 1638, 10.1126/science.297.5587.1638 Jena, 1994, Comparative RFLP mapping of a wild rice, Oryza officinalis, and cultivated rice, O. sativa, Genome, 37, 382, 10.1139/g94-054 Uozu, 1997, Repetitive sequences: cause for variation in genome size and chromosome morphology in the genus Oryza, Plant Mol. Biol., 37, 791, 10.1023/A:1005823124989 Martinez, 1994, Nuclear DNA content of ten rice species as determined by flow cytometry, Jpn. J. Genet., 69, 513, 10.1266/jjg.69.513 Tateoka, 1965, Taxonomy and chromosome numbers of African representatives of the Oryza officinalis complex, Bot. Mag. Tokyo, 78, 198, 10.15281/jplantres1887.78.198