Phylogenetic analysis of the complete mitogenome sequence of the raspberry weevil, Aegorhinus superciliosus (Coleoptera: Curculionidae), supports monophyly of the tribe Aterpini

Abascal, 2010, TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations, Nucleic Acids Res., 38, W7, 10.1093/nar/gkq291 Altschul, 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res., 25, 3389, 10.1093/nar/25.17.3389 Arnoldi, 2007, Mitochondrial genome sequence of the Brazilian luminescent click beetle Pyrophorus divergens (Coleoptera: Elateridae): mitochondrial genes utility to investigate the evolutionary history of Coleoptera and its bioluminescence, Gene, 405, 1, 10.1016/j.gene.2007.07.035 Bernt, 2013, A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny, Mol. Phylogenet. Evol., 69, 352, 10.1016/j.ympev.2013.05.002 Bocak, 2014, Building the Coleoptera tree-of-life for >8000 species: composition of public DNA data and fit with Linnaean classification, Syst. Entomol., 39, 97, 10.1111/syen.12037 Boore, 1999, Animal mitochondrial genomes, Nucleic Acids Res., 27, 1767, 10.1093/nar/27.8.1767 Botero-Castro, 2013, Next-generation sequencing and phylogenetic signal of complete mitochondrial genomes for resolving the evolutionary history of leaf-nosed bats (Phyllostomidae), Mol. Phylogenet. Evol., 69, 728, 10.1016/j.ympev.2013.07.003 Bouchard, 2011, Family-group names in Coleoptera (Insecta), Zookeys, 1, 10.3897/zookeys.88.807 Calder, 1989, The alimentary canal and nervous system of Curculionoidea (Coleoptera): gross morphology and systematic significance, J. Nat. Hist., 23, 1205, 10.1080/00222938900770671 Cameron, 2014, Insect mitochondrial genomics: implications for evolution and phylogeny, Annu. Rev. Entomol., 59, 95, 10.1146/annurev-ento-011613-162007 Cameron, 2008, Mitochondrial genome organization and phylogeny of two vespid wasps, Genome, 51, 800, 10.1139/G08-066 Caterino, 2002, Basal relationships of Coleoptera inferred from 18S rDNA sequences, Zool. Scr., 31, 41, 10.1046/j.0300-3256.2001.00092.x De Ré, 2014, Characterization of the complete mitochondrial genome of flower-breeding Drosophila incompta (Diptera, Drosophilidae), Genetica, 142, 525, 10.1007/s10709-014-9799-9 Drummond Elbrecht, 2013, The complete mitochondrial genome of the stonefly Dinocras cephalotes, Mitochondrial DNA, 1 Elgueta, 2006, Lista sistemática de las especies de Curculionoidea (Insecta: Coleoptera) presentes en Chile, con su sinonimia, Bol. Mus. Nac. Hist. Nat., 55, 113 Gaitán-Espitia, 2013, The complete mitochondrial genome of the land snail Cornu aspersum (Helicidae: Mollusca): intra-specific divergence of protein-coding genes and phylogenetic considerations within Euthyneura, PLoS One, 8, e67299, 10.1371/journal.pone.0067299 Gillett, 2014, Bulk de novo mitogenome assembly from pooled total DNA elucidates the phylogeny of weevils (Coleoptera: Curculionoidea), Mol. Biol. Evol., 31, 2223, 10.1093/molbev/msu154 Haran, 2013, Mitogenome sequences stabilize the phylogenetics of weevils (Curculionoidea) and establish the monophyly of larval ectophagy, Mol. Phylogenet. Evol., 67, 156, 10.1016/j.ympev.2012.12.022 Hundsdoerfer, 2009, Towards the phylogeny of the Curculionoidea (Coleoptera): reconstructions from mitochondrial and nuclear ribosomal DNA sequences, Zool. Anz., 248, 9, 10.1016/j.jcz.2008.09.001 Kim, 2009, Complete mitochondrial genome sequence of the yellow-spotted long-horned beetle Psacothea hilaris (Coleoptera: Cerambycidae) and phylogenetic analysis among coleopteran insects, Mol. Cells, 27, 429, 10.1007/s10059-009-0064-5 Klein, 2000, Distribution and importance of arthropods associated with agriculture and forestry in Chile Lanfear, 2012, PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses, Mol. Biol. Evol., 29, 1695, 10.1093/molbev/mss020 Laslett, 2008, ARWEN, a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences, Bioinformatics, 24, 172, 10.1093/bioinformatics/btm573 Leavitt, 2013, Searching for the optimal data partitioning strategy in mitochondrial phylogenomics: a phylogeny of Acridoidea (Insecta: Orthoptera: Caelifera) as a case study, Mol. Phylogenet. Evol., 67, 494, 10.1016/j.ympev.2013.02.019 Legalov, 2006, Phylogenetic reconstruction of weevil superfamily Curculionoidea (Coleoptera) using the SYNAP method, Biol. Bull., 33, 127, 10.1134/S1062359006020051 Luo, 2012, Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample, PLoS One, 7, e30087, 10.1371/journal.pone.0030087 Lyal, 2006, Morphology and systematic significance of Sclerolepidia in the weevils (Coleoptera: Curculionoidea), Syst. Biodivers., 4, 203, 10.1017/S1477200005001714 Mao, 2012, The first mitochondrial genome for the wasp superfamily Platygastroidea: the egg parasitoid Trissolcus basalis, Genome, 55, 194, 10.1139/g2012-005 Marvaldi, 1997, Higher level phylogeny of Curculionidae (Coleoptera: Curculionoidea) based mainly on larval characters, with special reference to broad-nosed weevils, Cladistics, 13, 285, 10.1111/j.1096-0031.1997.tb00321.x Marvaldi, 2003, Key to larvae of the South American subfamilies of weevils (Coleoptera, Curculionoidea), Rev. Chil. Hist. Nat., 76, 603, 10.4067/S0716-078X2003000400005 McKenna, 2009, Temporal lags and overlap in the diversification of weevils and flowering plants, Proc. Natl. Acad. Sci. U. S. A., 106, 7083, 10.1073/pnas.0810618106 Morrone, 1999, Synopsis and cladistics of the American Aterpini (Coleoptera: Curculionidae, Cyclominae), Insect Syst. Evol., 30, 417, 10.1163/187631200X00534 Oberprieler, 2010, A reclassification of the weevil subfamily Cyclominae (Coleoptera: Curculionidae), Zootaxa, 35, 1, 10.11646/zootaxa.2515.1.1 Oberprieler, 2007, Weevils, weevils, weevils everywhere, Zootaxa, 520, 491, 10.11646/zootaxa.1668.1.24 Papadopoulou, 2010, Revisiting the insect mitochondrial molecular clock: the mid-Aegean trench calibration, Mol. Biol. Evol., 27, 1659, 10.1093/molbev/msq051 Parra, 2009, Estado del conocimiento sobre el cabrito del frambueso (cf), Aegorhinus superciliosus (Guérin) (Coleoptera: Curculionidae), Idesia, 27, 57, 10.4067/S0718-34292009000100008 Qian, 2011, Two new decapod (Crustacea, Malacostraca) complete mitochondrial genomes: bearings on the phylogenetic relationships within the Decapoda, Zool. J. Linnean Soc., 162, 471, 10.1111/j.1096-3642.2010.00686.x Ramakodi, 2014, A 454 sequencing approach to dipteran mitochondrial, genome research, Genomics, 105, 53, 10.1016/j.ygeno.2014.10.014 Rambaut, 2009 Robertson, 2008, Searching for natural lineages within the Cerylonid Series (Coleoptera: Cucujoidea), Mol. Phylogenet. Evol., 46, 193, 10.1016/j.ympev.2007.09.017 Ronquist, 2003, MrBayes 3: Bayesian phylogenetic inference under mixed models, Bioinformatics, 19, 1572, 10.1093/bioinformatics/btg180 Schattner, 2005, The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs, Nucleic Acids Res., 33, W686, 10.1093/nar/gki366 Silvestro, 2011, RaxmlGUI: a graphical front-end for RAxML, Org. Divers. Evol. Stamatakis, 2006, RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models, Bioinformatics, 22, 2688, 10.1093/bioinformatics/btl446 Sunnucks, 1996, Numerous transposed sequences of mitochondrial cytochrome oxidase I–II in aphids of the genus Sitobion (Hemiptera: Aphididae), Mol. Biol. Evol., 13, 510, 10.1093/oxfordjournals.molbev.a025612 Timmermans, 2012, Phylogenetically informative rearrangements in mitochondrial genomes of Coleoptera, and monophyly of aquatic elateriform beetles (Dryopoidea), Mol. Phylogenet. Evol., 63, 299, 10.1016/j.ympev.2011.12.021 Wang, 2014, The complete mitochondrial genome of the longhorn beetle, Massicus raddei, Mitochondrial DNA, 1736, 1 Wibmer, 1986, Annotated checklist of the weevils (Curculionidae sensu lato) of South America (Coleoptera: Curculionoidea), Mem. Am. Entomol. Inst., 39, 1 Wild, 2008, Evaluating nuclear protein-coding genes for phylogenetic utility in beetles, Mol. Phylogenet. Evol., 48, 877, 10.1016/j.ympev.2008.05.023 Zavala, 2011, Diversity and distribution of the Aegorhinus genus in the La Araucanía Region of Chile, with special reference to A. superciliosus and A.nodipennis, Cienc. inv. agr., 38, 367, 10.4067/S0718-16202011000300006 Zhang, 1996, Nuclear integrations: challenges for mitochondrial DNA markers, Trends Ecol. Evol., 11, 247, 10.1016/0169-5347(96)10031-8