Effect of early antibiotic administration on cecal bacterial communities and their metabolic profiles in pigs fed diets with different protein levels

Anaerobe - Tập 42 - Trang 188-196 - 2016
Chuanjian Zhang1, Miao Yu1, Yuxiang Yang1, Chunlong Mu1, Yong Su1, Weiyun Zhu1
1Jiangsu Key Laboratory of Gastrointestinal Nutrition and Animal Health, Laboratory of Gastrointestinal Microbiology, College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, PR China

Tài liệu tham khảo

Cromwell, 2002, Why and how antibiotics are used in swine production, Anim. Biotechnol., 13, 7, 10.1081/ABIO-120005767 Boudry, 2004, Weaning induces both transient and long-lasting modifications of absorptive, secretory, and barrier properties of piglet intestine, J. Nutr., 134, 2256, 10.1093/jn/134.9.2256 Spreeuwenberg, 2001, Small intestine epithelial barrier function is compromised in pigs with low feed intake at weaning, J. Nutr., 131, 1520, 10.1093/jn/131.5.1520 Dibner, 2005, Antibiotic growth promoters in agriculture: history and mode of action, Poult. Sci., 84, 634, 10.1093/ps/84.4.634 Willing, 2011, Shifting the balance: antibiotic effects on host-microbiota mutualism, Nat. Rev. Microbiol., 9, 233, 10.1038/nrmicro2536 Allen, 2011, Antibiotics in feed induce prophages in swine fecal microbiomes, MBio, 2, 1867, 10.1128/mBio.00260-11 Looft, 2014, Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations, ISME. J., 8, 1566, 10.1038/ismej.2014.12 Bhandari, 2008, Evaluation of alternatives to antibiotics using an Escherichia coli K88+ model of piglet diarrhea: effects on gut microbial ecology, J. Anim. Sci., 86, 836, 10.2527/jas.2006-822 Scott, 2013, The influence of diet on the gut microbiota, Pharmacol. Res., 69, 52, 10.1016/j.phrs.2012.10.020 Liu, 2014, High-protein diet modifies colonic microbiota and luminal environment but not colonocyte metabolism in the rat model: the increased luminal bulk connection, Am. J. Physiol. Gastrointest. Liver. Physiol., 307, G459, 10.1152/ajpgi.00400.2013 Mu, 2016, The colonic microbiome and epithelial transcriptome are altered in rats fed a high-protein diet compared with a normal-protein diet, J. Nutr., 146, 474, 10.3945/jn.115.223990 Nyangale, 2012, Gut microbial activity, implications for health and disease: the potential role of metabolite analysis, J. Proteome Res., 11, 5573, 10.1021/pr300637d Geypens, 1997, Influence of dietary protein supplements on the formation of bacterial metabolites in the colon, Gut, 41, 70, 10.1136/gut.41.1.70 Rist, 2013, Impact of dietary protein on microbiota composition and activity in the gastrointestinal tract of piglets in relation to gut health: a review, Animal, 7, 1067, 10.1017/S1751731113000062 Luo, 2015, Effects of low dietary protein on the metabolites and microbial communities in the caecal digesta of piglets, Arch. Anim. Nutr., 69, 212, 10.1080/1745039X.2015.1034521 Zhou, 2016, Effects of the dietary protein level on the microbial composition and metabolomic profile in the hindgut of the pig, Anaerobe, 38, 61, 10.1016/j.anaerobe.2015.12.009 National Research Council (U.S.), 2012 Zoetendal, 1998, Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria, Appl. Environ. Microbiol., 64, 3854, 10.1128/AEM.64.10.3854-3859.1998 Yang, 2014, Comparison of faecal microbial community of lantang, bama, erhualian, meishan, xiaomeishan, duroc, landrace, and yorkshire sows, Asian Australas. J. Anim. Sci., 27, 898, 10.5713/ajas.2013.13621 Chowdhury, 1991, One step 'miniprep' method for the isolation of plasmid DNA, Nucleic Acids Res., 19, 2792, 10.1093/nar/19.10.2792 Wang, 2011, Effect of the gynosaponin on methane production and microbe numbers in a fungus-methanogen co-culture, J. Anim. Feed. Sci., 20, 272, 10.22358/jafs/66184/2011 Chaney, 1962, Modified reagents for determination of urea and ammonia, Clin. Chem., 8, 130, 10.1093/clinchem/8.2.130 Yang, 2014, Determination of biogenic amines in digesta by high performance liquid chromatography with precolumn dansylation, Anal. Lett., 47, 1290, 10.1080/00032719.2013.871550 Jensen, 1995, 3-Methylindole (skatole) and indole production by mixed populations of pig fecal bacteria, Appl. Environ. Microbiol., 61, 3180, 10.1128/aem.61.8.3180-3184.1995 Flint, 2012, The role of the gut microbiota in nutrition and health, Nat. Rev. Gastroenterol. Hepatol., 9, 577, 10.1038/nrgastro.2012.156 Wexler, 2007, Bacteroides: the good, the bad, and the nitty-gritty, Clin. Microbiol. Rev., 20, 593, 10.1128/CMR.00008-07 Louis, 2009, Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine, Fems Microbiol. Lett., 294, 1, 10.1111/j.1574-6968.2009.01514.x Wellock, 2006, The effect of dietary protein supply on the performance and risk of post-weaning enteric disorders in newly weaned pigs, Anim. Sci., 82, 327, 10.1079/ASC200643 Morel, 2015, Preweaning modulation of intestinal microbiota by oligosaccharides or amoxicillin can contribute to programming of adult microbiota in rats, Nutrition, 31, 515, 10.1016/j.nut.2014.09.011 Otto, 2003, Ammonia, volatile fatty acids, phenolics, and odor offensiveness in manure from growing pigs fed diets reduced in protein concentration, J. Anim. Sci., 81, 1754, 10.2527/2003.8171754x van Beers-Schreurs, 1998, Weaning and the weanling diet influence the villous height and crypt depth in the small intestine of pigs and alter the concentrations of short-chain fatty acids in the large intestine and blood, J. Nutr., 128, 947, 10.1093/jn/128.6.947 Bordonaro, 2008, Butyrate and Wnt signaling: a possible solution to the puzzle of dietary fiber and colon cancer risk?, Cell Cycle, 7, 1178, 10.4161/cc.7.9.5818 Rasmussen, 1988, Degradation of amino acids to short-chain fatty acids in humans. An in vitro study, Scand. J. Gastroenterol., 23, 178, 10.3109/00365528809103964 Belenguer, 2007, Impact of pH on lactate formation and utilization by human fecal microbial communities, Appl. Environ. Microbiol., 73, 6526, 10.1128/AEM.00508-07 Htoo, 2007, Effect of dietary protein content on ileal amino acid digestibility, growth performance, and formation of microbial metabolites in ileal and cecal digesta of early-weaned pigs, J. Anim. Sci., 85, 3303, 10.2527/jas.2007-0105 Dong, 1996, Effect of dietary protein levels on the bacterial breakdown of protein in the large intestine, and diarrhoea in early weaned piglets, Acta. Vet. Zootec. Sin., 27, 293 Yoon, 2012, Effects of dietary supplementation of antimicrobial peptide-A3 on growth performance, nutrient digestibility, intestinal and fecal microflora and intestinal morphology in weanling pigs, Anim. Feed. Sci. Tech., 177, 98, 10.1016/j.anifeedsci.2012.06.009 Nicholson, 2012, Host-gut microbiota metabolic interactions, Science, 336, 1262, 10.1126/science.1223813 Chung, 1992, Apparent and true amino-acid digestibility of a crystalline amino-acid mixture and of casein - comparison of values obtained with Ileal-Cannulated pigs and cecectomized cockerels, J. Anim. Sci., 70, 3781, 10.2527/1992.70123781x Smith, 1897, A modification of the method for determining the production of indol by bacteria, J. Exp. Med., 2, 543, 10.1084/jem.2.5.543 McGarr, 2005, Diet, anaerobic bacterial metabolism, and colon cancer: a review of the literature, J. Clin. Gastroenterol., 39, 98 Nubel, 1996, Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis, J. Bacteriol., 178, 5636, 10.1128/jb.178.19.5636-5643.1996 Maeda, 2003, Quantitative real-time PCR using TaqMan and SYBR Green for Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, tetQ gene and total bacteria, Fems Immunol. Med. Mic., 39, 81, 10.1016/S0928-8244(03)00224-4 Guo, 2008, Development of a real-time PCR method for Firmicutes and Bacteroidetes in faeces and its application to quantify intestinal population of obese and lean pigs, Lett. Appl. Microbiol., 47, 367, 10.1111/j.1472-765X.2008.02408.x Walker, 2011, Dominant and diet-responsive groups of bacteria within the human colonic microbiota, ISME J., 5, 220, 10.1038/ismej.2010.118 Matsuki, 2004, Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human feces, Appl. Environ. Microbiol., 70, 7220, 10.1128/AEM.70.12.7220-7228.2004 Bartosch, 2004, Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota, Appl. Environ. Microbiol., 70, 3575, 10.1128/AEM.70.6.3575-3581.2004 Huijsdens, 2002, Quantification of bacteria adherent to gastrointestinal mucosa by real-time PCR, J. Clin. Microbiol., 40, 4423, 10.1128/JCM.40.12.4423-4427.2002 Khafipour, 2009, Rumen microbiome composition determined using two nutritional models of subacute ruminal acidosis, Appl. Environ. Microbiol., 75, 7115, 10.1128/AEM.00739-09