Global Dispersal Pattern of HIV Type 1 Subtype CRF01_AE: A Genetic Trace of Human Mobility Related to Heterosexual Sexual Activities Centralized in Southeast Asia

Journal of Infectious Diseases - Tập 211 Số 11 - Trang 1735-1744 - 2015
Konstantinos Angelis1, Jan Albert2,3, Ioannis Mamais1, Gkikas Magiorkinis1,4, Oliver G. Pybus1, Osamah Hamouda5, Daniel Struck6, Jurgen Vercauteren7, Anne‐Mieke Vandamme8, Ivailo Alexiev9, Birgitta Åsjö10, Claudia Balotta11, Ricardo Camacho12, Suzie Coughlan13, Algirdas Griškevičius14, Zehava Grossman15, Daria Podlekareva16, Leondios G. Kostrikis17, S. idovec Lepej18, Kirsi Liitsola19, Marek Linka20, Claus Henrik Nielsen21, Dan Oțelea22, Roger Paredes23, Mario Poljak24, Elisabeth Puchhammer‐Stöckl25,26, Jean‐Christophe Goffard6, Anders Sönnerborg2,25,26, D Staneková27, Maja Stanojević28, Charles A. Boucher29, Lauren M. Kaplan30, Dimitrios Paraskevis1
1Department of Hygiene, Epidemiology and Medical Statistics, Medical School, University of Athens, Greece
2Department of Clinical Microbiology, Karolinska University Hospital, Stockholm, Sweden
3Department of Microbiology, Tumor and Cell Biology
4Department of Zoology, University of Oxford, United Kingdom
5Robert Koch-Institut, Berlin, Germany
6Centre de Recherche Public de la Sante, Luxembourg
7Clinical and Epidemiological Virology, Rega Institute for Medical Research, Department of Microbiology and Immunology, KU Leuven, Belgium
8Department of Virology, University Medical Center, Utrecht
9National Center of Infectious and Parasitic Diseases, Sofia, Bulgaria
10University of Bergen, Norway
11University of Milan, Italy
12Centro de Malária e OutrasDoenças Tropicais and Unidade de Microbiologia, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, Portugal
13University College, Dublin, Ireland
14Lithuanian AIDS Center, Vilnius
15Tel Aviv University, Israel
16Hospital of Infectious Diseases, Warsaw, Poland
17University of Cyprus, Nicosia
18Department of Molecular Diagnostics and Flow Cytometry, University Hospital for Infectious Diseases Dr F. Mihaljevic, Zagreb, Croatia
19National Institute of Health and Welfare, Helsinki, Finland
20National Reference Laboratory of AIDS, National Institute of Health, Prague, Czech Republic
21Statens Serum Institute, Copenhagen, Denmark
22National Institute for Infectious Diseases “Prof Dr Matei Bals”, Bucharest, Romania
23IRSICAIXA Foundation, Badalona, Spain
24Faculty of Medicine, Slovenian HIV/AIDS Reference Center, University of Ljubljana, Slovenia
25Division of Clinical Virology, Karolinska Institute
26Division of Infectious Diseases
27Slovak Medical University, Bratislava
28University of Belgrade, Faculty of Medicine, Serbia
29Erasmus MC University Medical Center, Rotterdam, The Netherlands
30Alcohol Research Group, University California, Berkeley

Tóm tắt

Từ khóa


Tài liệu tham khảo

10.1101/cshperspect.a006841

10.1098/rstb.2010.0031

10.1128/JVI.74.22.10498-10507.2000

Gao, 1996, The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin, J Virol, 70, 7013, 10.1128/JVI.70.10.7013-7029.1996

World Health Organization (WHO) Regional Office for the Western Pacific. Sex work in Asia. Geneva: WHO, 2001.

10.1038/374124b0

Carr, 1996, Full-length sequence and mosaic structure of a human immunodeficiency virus type 1 isolate from Thailand, J Virol, 70, 5935, 10.1128/JVI.70.9.5935-5943.1996

10.1089/aid.1992.8.1887

10.1001/jama.1993.03510080059032

McCutchan, 1996, Diversity of the envelope glycoprotein among human immunodeficiency virus type 1 isolates of clade E from Asia and Africa, J Virol, 70, 3331, 10.1128/JVI.70.6.3331-3338.1996

10.1097/QAD.0b013e328342ff93

10.1097/00002030-200102160-00013

10.1097/00002030-199508000-00003

UNAIDS. Evaluation of the 100% condom programme in Thailand. UNAIDS case study. Geneva: UNAIDS, 2000.

10.1056/NEJMoa1105243

Tourism Authority of Thailand. Tourism statistics. http://www2.tat.or.th/stat/web/static_tsi_detail.php?L=&TsiID=1. Accessed 22 March 2014.

10.1016/j.virol.2009.05.023

10.1371/journal.pone.0080884

10.1371/journal.pone.0080487

10.1371/journal.pone.0067286

10.1371/journal.pone.0054238

Los Alamos National Laboratory. HIV databases. http://www.hiv.lanl.gov/content/index. Accessed 2 November 2012.

Los Alamos National Laboratory. HCV sequence database. http://hcv.lanl.gov/content/sequence/ELIMDUPES/elimdupes.html. Accessed 4 December 2012.

10.1097/QAD.0b013e3282f5e062

10.1186/1742-4690-6-49

10.1093/molbev/msr121

10.1007/BF00178256

10.1007/BF00160154

10.1093/bioinformatics/btl446

10.1080/10635150802429642

CIPRES Cyberinfrastructure for Phylogenetic Research. The CIPRES Science Gateway V. 3.3. http://www.phylo.org/index.php/portal/. Accessed 13 May 2013.

Slatkin, 1989, A cladistic measure of gene flow inferred from the phylogenies of alleles, Genetics, 123, 603, 10.1093/genetics/123.3.603

Swofford DL . PAUP*. phylogenetic analysis using parsimony (and other methods). Version 4. Sunderland, MA: Sinauer Associates, 2003.

10.1128/JVI.01413-10

10.1016/j.meegid.2008.03.004

10.2471/BLT.10.010610

10.1006/viro.2002.1691

10.1089/aid.1996.12.841

10.1186/1471-2148-7-214

Ou, 1992, Wide distribution of two subtypes of HIV-1 in Thailand, AIDS Res Hum Retroviruses, 8, 1471, 10.1089/aid.1992.8.1471

Ubolyam, 1994, Evidence of three HIV-1 subtypes in subgroups of individuals in Thailand, Lancet, 344, 485, 10.1016/S0140-6736(94)91825-2