Latent potential of current plant diagnostics for detection of sugarcane diseases

Oerke, 2006, Crop Losses to Pests, J. Agric. Sci., 144, 31, 10.1017/S0021859605005708 Fletcher, 2006, Plant Pathogen Forensics: Capabilities, Needs, and Recommendations, Microbiol. Mol. Biol. Rev., 70, 450, 10.1128/MMBR.00022-05 Urashima, 2017, Prevalence and Severity of Ratoon Stunt in Commercial Brazilian Sugarcane Fields, Plant Dis., 101, 815, 10.1094/PDIS-07-16-1030-RE Viswanathan, 2011, Disease Scenario and Management of Major Sugarcane Diseases in India, Sugar Tech, 13, 336, 10.1007/s12355-011-0102-4 Behrens, N., Tunny, G., 2019. The Economic Contribution of the Sugarcane Industry to Queensland and Its Regional Communities.; Queensland Economic Advocacy Solutions: Brisbane, QLD, p 24. Sugar Australia. Industry Information. https://www.sugaraustralia.com.au/sugar-australia/about/industry-information/ (accessed 2021-11-10). Magarey, 2003 Oerke, 2020, Remote Sensing of Diseases, Annu. Rev. Phytopathol., 58, 225, 10.1146/annurev-phyto-010820-012832 Pitcher, 2000, Molecular Techniques for the Detection and Identification of New Bacterial Pathogens, J. Infect., 40, 116, 10.1053/jinf.2000.0635 Ward, 2004, Plant Pathogen Diagnostics: Immunological and Nucleic Acid-Based Approaches, Ann. Appl. Biol., 145, 1, 10.1111/j.1744-7348.2004.tb00354.x Lazcka, 2007, Pathogen Detection: A Perspective of Traditional Methods and Biosensors, Biosens Bioelectron, 22, 1205, 10.1016/j.bios.2006.06.036 Donoso, 2018, In-Field Molecular Diagnosis of Plant Pathogens: Recent Trends and Future Perspectives, Plant Pathol., 67, 1451, 10.1111/ppa.12859 Nguyen, 2020, Point-of-Care Devices for Pathogen Detections: The Three Most Important Factors to Realise towards Commercialization, TrAC, Trends Anal. Chem., 131, 10.1016/j.trac.2020.116004 Lau, 2016, Advanced DNA-Based Point-of-Care Diagnostic Methods for Plant Diseases Detection, Front. Plant Sci., 2017, 8 Mairhofer, 2009, Microfluidic Systems for Pathogen Sensing: A Review, Sensors, 9, 4804, 10.3390/s90604804 Grieshaber, 2008, Electrochemical Biosensors - Sensor Principles and Architectures, Sensors (Basel), 8, 1400, 10.3390/s80314000 Dyussembayev, 2021, Biosensor Technologies for Early Detection and Quantification of Plant Pathogens, Front. Chem., 9, 144, 10.3389/fchem.2021.636245 Nezhad, 2014, Future of Portable Devices for Plant Pathogen Diagnosis, Lab Chip, 14, 2887, 10.1039/C4LC00487F Khater, 2017, Biosensors for Plant Pathogen Detection, Biosens. Bioelectron., 93, 72, 10.1016/j.bios.2016.09.091 Cassedy, 2020, Sowing Seeds for the Future: The Need for on-Site Plant Diagnostics, Biotechnol. Adv., 39, 10.1016/j.biotechadv.2019.02.014 Fang, 2015, Current and Prospective Methods for Plant Disease Detection, Biosensors, 5, 537, 10.3390/bios5030537 Magarey, 2013, Diseases of Australian Sugarcane: Field Guide, BSES: Indooroopilly, Qld. Raza, 2019, Culturable Plant Pathogenic Fungi Associated with Sugarcane in Southern China, Fungal Diversity, 99, 1, 10.1007/s13225-019-00434-5 Magarey, R.C., Bull, J.I., Royal, A. Surveys Assessing the Incidence and Severity of Pachymetra Root Rot in the Australian Sugarcane Industry. In: Proceedings of the 35th Conference of the Australian Society of Sugar Cane Technologists held at Townsville, Queensland, Australia, 16-18 April 2013 2013. Croft, 1996, Major Diseases Affecting Sugarcane Production in Australia and Recent Experiences with Sugarcane Diseases in Quarantine, Sugarcane Germplasm Conservation Exchange, 28 Magarey, 2021, Incidence and Economic Effects of Ratoon Stunting Disease on the Queensland Sugarcane Industry, Austr. Soc. Sugar Cane Technol., 42, 520 Young, 2016, Efficient Diagnosis of Ratoon Stunting Disease of Sugarcane by Quantitative PCR on Pooled Leaf Sheath Biopsies, Plant Dis., 100, 2492, 10.1094/PDIS-06-16-0848-RE Hoy, 1999, Spread and Increase of Ratoon Stunting Disease of Sugarcane and Comparison of Disease Detection Methods, Plant Dis., 83, 1170, 10.1094/PDIS.1999.83.12.1170 Young, A.; Knight, N. RSD Resistance and the Resistance to Change; 2020. Ratoon Stunting Disease; IS13007; Sugar Research Australia, 2013. Hughes, 1955, Ratoon Stunting Disease of Sugar Cane, J. Aust. Inst. Agric. Sci., 10, 3 Young, 2017, Molecular Detection of Diverse Leifsonia Strains Associated With Sugarcane, Plant Dis., 101, 1422, 10.1094/PDIS-01-17-0016-RE Young, 2018, Turning a Blind Eye to Ratoon Stunting Disease of Sugarcane in Australia, Plant Dis., 102, 473, 10.1094/PDIS-06-17-0911-FE Damann Jr, K., Benda, G., 1983. Evaluation of Commercial Heat-Treatment Methods for Control of Ratoon Stunting Disease of Sugarcane. Plant Disease 1983, 67, 966–967. https://doi.org/10.1094/PD-67-966. Victoria, J.F., Ochoa, O., Cassale, H.C., 1986. Thermic Control of Ratoon Stunting Disease of Sugarcane in Colombia. In Proc. Int. Soc. Sugar Cane Technol; 1986; Vol. 19, pp 325–331. Taylor, 1988, Harvester Transmission of Leaf Scald and Ratoon Stunting Disease, Sugar Cane, 4, 11 Prevention the best cure: RSD threatening commercial sugarcane crops. Sugar Research Australia. https://sugarresearch.com.au/prevention-best-cure-rsd-threatening-commercial-sugarcane-crops/ (accessed 2021-11-29). Leaf Scald; Information Sheet IS13002; Sugar Research Australia, 2017. Rott, 2000, A Guide to Sugarcane Diseases, Editions Quae Ricaud, 2012 Birch, 2001, Xanthomonas Albilineans and the Antipathogenesis Approach to Disease Control, Mol. Plant Pathol, 2, 1, 10.1046/j.1364-3703.2001.00046.x Rott, P., 1995. Leaf Scald, a Bacterial Disease of Sugarcane, Is Currently Spreading Rapidly Worldwide. It Can Only Be Controlled Preventively with Techniques to Propagate and Distribute Certified Healthy Plants, along with Strict Varietal Selection. Agriculture for Development 1995, 6, 49–56. Nithya, 2012, Molecular Detection of Colletotrichum Falcatum Causing Red Rot Disease of Sugarcane (Saccharum Officinarum) Using a SCAR Marker, Ann. Appl. Biol., 160, 168, 10.1111/j.1744-7348.2011.00529.x Wongkaew, 1995, Detection of Sugarcane White Leaf Mycoplasmalike Organism in Field Grown Plants and Tissue Cultures by DNA, Probes Wongkaew, P. 4. Wongkaew, P., 2012. Sugarcane White Leaf Disease Characterization, Diagnosis Development, and Control Strategies. Func. Plant Sci. Biotech. 6 (Special Issue 2, Sugarcane Pathology): 73-84. Functional Plant Science and Biotechnology 2012, 6, 73–84. Garces, 2014, Detection and Quantification of Xanthomonas Albilineans by QPCR and Potential Characterization of Sugarcane Resistance to Leaf Scald, Plant Dis., 98, 121, 10.1094/PDIS-04-13-0431-RE Smith, 1992, PCR Amplification of a Specific Double-Stranded RNA Region of Fiji Disease Virus from Diseased Sugarcane, J. Virol. Methods, 39, 237, 10.1016/0166-0934(92)90097-W Glynn, 2010, PCR Assays for the Sugarcane Rust Pathogens Puccinia Kuehnii and P. Melanocephala and Detection of a SNP Associated with Geographical Distribution in P, Kuehnii. Plant Pathology, 59, 703, 10.1111/j.1365-3059.2010.02299.x Singh, 2004, Smut Disease Assessment by PCR and Microscopy in Inoculated Tissue Cultured Sugarcane Cultivars, Plant Sci., 167, 987, 10.1016/j.plantsci.2004.05.006 Xie, 2009, Simultaneous Detection and Identification of Four Sugarcane Viruses by One-Step RT-PCR, J. Virol. Methods, 162, 64, 10.1016/j.jviromet.2009.07.015 Comstock, 1992, Detection of the Sugarcane Leaf Scald Pathogen, Xanthomonas Albilineans, Using Tissue Blot Immunoassay, ELISA, and Isolation Techniques, Plant Dis., 76, 1033, 10.1094/PD-76-1033 Thorat, 2015, Detection of Sugarcane Mosaic Virus in Diseased Sugarcane Using ELISA and RT-PCR Technique, J. Pure Appl. Microbiol., 9, 319 Viswanathan, 2004, Detection of Sugarcane Yellow Leaf Virus, the Causal Agent of Yellow Leaf Syndrome in Sugarcane by DAS-ELISA, Arch. Phytopathol. Plant Prot., 37, 169, 10.1080/03235400410001730676 Davis, M.J., Graves Gillaspie, A.J., Harris, R. W., Lawson, R.H., 1980. Ratoon Stunting Disease of Sugarcane: Isolation of the Causal Bacterium. Science 1980. Rott, P., 1995. Leaf Scald, a Bacterial Disease of Sugarcane, Is Currently Spreading Rapidly Worldwide. It Can Only Be Controlled Preventively with Techniques to Propagate and Distribute Certified Healthy Plants, along with Strict Varietal Selection. 1995, 8. Magarey, 2019, Review of Sugarcane Fiji Leaf Gall Disease in Australia and the Declaration of Pest Freedom in Central Queensland, Crop Prot., 121, 113, 10.1016/j.cropro.2019.03.022 Yang, 1997, Sequence and Relationships of Sugarcane Mosaic and Sorghum Mosaic Virus Strains and Development of RT-PCR-Based RFLPs for Strain Discrimination, Phytopathology®, 87, 932, 10.1094/PHYTO.1997.87.9.932 Apan, 2004, Detecting Sugarcane ‘Orange Rust’ Disease Using EO-1 Hyperion Hyperspectral Imagery, Int. J. Remote Sens., 25, 489, 10.1080/01431160310001618031 Croft, B., Magarey, R. C., Whittle, P., 2000. Manual of Canegrowing; BSES, 2000. Shivas, 2012, Peronosclerospora Australiensis Sp. Nov. and Peronosclerospora Sargae Sp. Nov., Two Newly Recognised Downy Mildews in Northern Australia, and Their Biosecurity Implications. Australasian, Plant Pathol., 41, 125 Viswanathan, 2011, Genetic Diversity of Sugarcane Grassy Shoot (SCGS)-Phytoplasmas Causing Grassy Shoot Disease in India, Sugar Tech, 13, 220, 10.1007/s12355-011-0084-2 Wongkaew, 1997, Differentiation of Phytoplasmas Associated with Sugarcane and Gramineous Weed White Leaf Disease and Sugarcane Grassy Shoot Disease by RFLP and Sequencing, Theor. Appl. Genet., 95, 660, 10.1007/s001220050609 Stevens, 2004, Bacterial Separation and Concentration from Complex Sample Matrices: A Review, Crit. Rev. Microbiol., 30, 7, 10.1080/10408410490266410 Pan, 1997, A Polymerase Chain Reaction Protocol for the Detection of Xanthomonas Albilineans, the Causal Agent of Sugarcane Leaf Scald Disease, Plant Dis., 81, 189, 10.1094/PDIS.1997.81.2.189 Zhang, 2013, Multiplex Immunoassays of Plant Viruses Based on Functionalized Upconversion Nanoparticles Coupled with Immunomagnetic Separation, J. Nanomater., 2013, 10.1155/2013/317437 Yang, 2008, Wash-Free, Antibody-Assisted Magnetoreduction Assays of Orchid Viruses, J. Virol. Methods, 149, 334, 10.1016/j.jviromet.2008.01.019 Tang, 2007, An Improved Electrochemiluminescence Polymerase Chain Reaction Method for Highly Sensitive Detection of Plant Viruses, Anal. Chim. Acta, 582, 275, 10.1016/j.aca.2006.09.021 Bennett, 1997, The Use of Bacteriophage-Based Systems for the Separation and Concentration of Salmonella, J. Appl. Microbiol., 83, 259, 10.1046/j.1365-2672.1997.00257.x Jones, 2020, The Application of Bacteriophage Diagnostics for Bacterial Pathogens in the Agricultural Supply Chain: From Farm-to-Fork, PHAGE, 1, 176, 10.1089/phage.2020.0042 Umer, 2021, Naked Eye Evaluation and Quantitative Detection of the Sugarcane Leaf Scald Pathogen, Xanthomonas Albilineans, Sugarcane Xylem Sap, Crop Pasture Sci., 72, 361, 10.1071/CP20416 Haq, 2012, Bacteriophages and Their Implications on Future Biotechnology: A Review, Virol. J., 9, 1, 10.1186/1743-422X-9-9 Glantz, 1999, Bioadhesion–a Phenomenon with Multiple Dimensions, Acta Odontol. Scand., 57, 238, 10.1080/000163599428634 Meylheuc, 2002, Comparison of the Cell Surface Properties and Growth Characteristics of Listeria Monocytogenes and Listeria Innocua, J. Food Prot., 65, 786, 10.4315/0362-028X-65.5.786 Adekanmbi, 2016, Dielectrophoretic Applications for Disease Diagnostics Using Lab-on-a-Chip Platforms, Lab Chip, 16, 2148, 10.1039/C6LC00355A Deng, 2014, Development of Flow through Dielectrophoresis Microfluidic Chips for Biofuel Production: Sorting and Detection of Microalgae with Different Lipid Contents, Biomicrofluidics, 8, 10.1063/1.4903942 Gagnon, 2008, Dielectrophoretic Detection and Quantification of Hybridized DNA Molecules on Nano-Genetic Particles, Electrophoresis, 29, 4808, 10.1002/elps.200800528 Pysher, 2007, Electrophoretic and Dielectrophoretic Field Gradient Technique for Separating Bioparticles, Anal. Chem., 79, 4552, 10.1021/ac070534j Fernandez, 2017, Review: Microbial Analysis in Dielectrophoretic Microfluidic Systems, Anal. Chim. Acta, 966, 11, 10.1016/j.aca.2017.02.024 Iqbal, 2016, Aqueous Two-Phase System (ATPS): An Overview and Advances in Its Applications, Biol. Proce. Online, 18, 18, 10.1186/s12575-016-0048-8 Cheung, 2018, A Combined Aqueous Two-Phase System and Spot-Test Platform for the Rapid Detection of Escherichia Coli O157:H7 in Milk, SLAS TECHNOLOGY: Translating Life Sciences Innovation, 23, 57, 10.1177/2472630317731892 Lantz, 1994, Enhanced Sensitivity in PCR Detection of Listeria Monocytogenes in Soft Cheese through Use of an Aqueous Two-Phase System as a Sample Preparation Method, Appl. Environ. Microbiol., 60, 3416, 10.1128/aem.60.9.3416-3418.1994 Jiang, 2009, Aqueous Two-Phase Extraction of 2,3-Butanediol from Fermentation Broths Using an Ethanol/Phosphate System, Process Biochem., 1, 112, 10.1016/j.procbio.2008.09.019 Benavides, 2008, Extraction and Purification of Bioproducts and Nanoparticles Using Aqueous Two-Phase Systems Strategies, Chem. Eng. Technol., 31, 838, 10.1002/ceat.200800068 Roux, 2009, Optimization and Troubleshooting in PCR, Cold Spring Harb. Protoc., 2009, pdb.ip66, 10.1101/pdb.ip66 Capote, 2012, Molecular Tools for Detection of Plant Pathogenic Fungi and Fungicide Resistance, IntechOpen Doyle, J.J., 1990. Isolation of Plant DNA from Fresh Tissue. Focus 1990, 12, 13–15. Chomczynski, 2006, Alkaline Polyethylene Glycol-Based Method for Direct PCR from Bacteria, Eukaryotic Tissue Samples, and Whole Blood, Biotechniques, 40 (4), 454, 456, 458 Hodgetts, 2011, Development of Rapid In-Field Loop-Mediated Isothermal Amplification (LAMP) Assays for Phytoplasmas, Bull. Insectol., 64 Tomlinson, 2010, A Five-Minute DNA Extraction Method for Expedited Detection of Phytophthora Ramorum Following Prescreening Using Phytophthora Spp. Lateral Flow Devices, J. Microbiol. Methods, 81, 116, 10.1016/j.mimet.2010.02.006 Zou, 2017, Nucleic Acid Purification from Plants, Animals and Microbes in under 30 Seconds, PLoS Biol., 15, 10.1371/journal.pbio.2003916 Kant, 2018, Microfluidic Devices for Sample Preparation and Rapid Detection of Foodborne Pathogens, Biotechnol. Adv., 36, 1003, 10.1016/j.biotechadv.2018.03.002 Zhang, 2018, Detection of Pathogenic Microorganisms by Microfluidics Based Analytical Methods, Anal. Chem., 90, 5512, 10.1021/acs.analchem.8b00399 Brumbley, 2002, Transformation and Transposon Mutagenesis of Leifsonia Xyli Subsp. Xyli, Causal Organism of Ratoon Stunting Disease of Sugarcane, MPMI, 15, 262, 10.1094/MPMI.2002.15.3.262 Harrison, 1988, Colonization of Vascular Tissues by Clavibacter Xyli Subsp. Xyli in Stalks of Sugarcane Cultivars Differing in Susceptibility to Ratoon Stunting Disease, Phytopathology, 78, 722, 10.1094/Phyto-78-722 Grisham, 2007, Early Detection of Leifsonia Xyli Subsp. Xyli in Sugarcane Leaves by Real-Time Polymerase Chain Reaction, Plant Dis., 91, 430, 10.1094/PDIS-91-4-0430 Rott, 1994, Serological Variability in Xanthomonas Albilineans, Causal Agent of Leaf Scald Disease of Sugarcane, Plant. Pathol., 43, 344, 10.1111/j.1365-3059.1994.tb02694.x Maugeri, 1998, Molecular Characterization of Fiji Disease Fijivirus Genome Segment 9, J. Gen. Virol., 79, 3155, 10.1099/0022-1317-79-12-3155 Smith, 1994, Detection of Sugarcane Mosaic Virus and Fiji Disease Virus in Diseased Sugarcane Using the Polymerase Chain Reaction, Plant Dis., 78, 557, 10.1094/PD-78-0557 Anandakumar, 2020, Reverse Transcription Loop-Mediated Isothermal Amplification Based Rapid Detection of Sugarcane Mosaic Virus and Sugarcane Streak Mosaic Virus Associated with Mosaic Disease of Sugarcane, Indian Phytopathol., 73, 349, 10.1007/s42360-020-00219-w Braithwaite, 2018, Confirmation That the Novel Cercozoa Phytocercomonas Venanatans Is the Cause of the Disease Chlorotic Streak in Sugarcane, Phytopathology®, 108, 487, 10.1094/PHYTO-07-17-0236-R Ngo, 2018, Phytocercomonas Venanatans, a New Species of Cercozoa Associated with Chlorotic Streak of Sugarcane, Phytopathology®, 108, 479, 10.1094/PHYTO-07-17-0237-R Hassan, 2010, Suppression of Red Rot Caused by Colletotrichum Falcatum on Sugarcane Plants Using Plant Growth-Promoting Rhizobacteria, Biocontrol, 55, 531, 10.1007/s10526-010-9268-z Chandra, 2015, Loop-Mediated Isothermal Amplification (LAMP) Based Detection of Colletotrichum Falcatum Causing Red Rot in Sugarcane, Mol. Biol. Rep., 42, 1309, 10.1007/s11033-015-3875-9 Stoll, 2003, Molecular Phylogeny of Ustilago and Sporisorium Species (Basidiomycota, Ustilaginales) Based on Internal Transcribed Spacer (ITS) Sequences, Can. J. Bot., 81, 976, 10.1139/b03-094 Wei, 2006, Associations between DNA Markers and Resistance to Diseases in Sugarcane and Effects of Population Substructure, Theor. Appl. Genet., 114, 155, 10.1007/s00122-006-0418-8 Schneider, 1999, Detection and Differentiation of Phytoplasmas in Australia: An Update, Aust. J. Agric. Res., 50, 10.1071/A98106 Hanboonsong, 2002, Transovarial Transmission of Sugarcane White Leaf Phytoplasma in the Insect Vector Matsumuratettix Hiroglyphicus (Matsumura), Insect Mol. Biol., 11, 97, 10.1046/j.0962-1075.2001.00314.x Wongkaew, 2014, Diagnosis of Sugarcane White Leaf Disease Using the Highly Sensitive DNA Based Voltammetric Electrochemical Determination, Am. J. Plant Sci., 5, 2256, 10.4236/ajps.2014.515240 Cesewski, 2020, Electrochemical Biosensors for Pathogen Detection, Biosens. Bioelectron., 159, 10.1016/j.bios.2020.112214 Jócsák, 2019, Electrical Impedance Measurement on Plants: A Review with Some Insights to Other Fields, Theor. Exp. Plant Physiol., 31, 359, 10.1007/s40626-019-00152-y Khater, 2019, Electrochemical Detection of Plant Virus Using Gold Nanoparticle-Modified Electrodes, Anal. Chim. Acta, 1046, 123, 10.1016/j.aca.2018.09.031 Papadakis, 2015, Bacteria Murmur: Application of an Acoustic Biosensor for Plant Pathogen Detection, PLoS ONE, 10, 10.1371/journal.pone.0132773 Kanazawa, 1985, Frequency of a Quartz Microbalance in Contact with Liquid, Anal. Chem., 57, 1770, 10.1021/ac00285a062 Montagut, 2011, Technology in Biosensors; IntechOpen Huang, 2014, Quartz Crystal Microbalance Based Biosensor for Rapid and Sensitive Detection of Maize Chlorotic Mottle Virus, Anal. Methods, 6, 4530, 10.1039/C4AY00292J Eun, 2002, Detection of Two Orchid Viruses Using Quartz Crystal Microbalance (QCM) Immunosensors, J. Virol. Methods, 99, 71, 10.1016/S0166-0934(01)00382-2 Dickert, 2004, Bioimprinted QCM Sensors for Virus Detection—Screening of Plant Sap, Anal. Bioanal. Chem., 378, 1929, 10.1007/s00216-004-2521-5 Jarocka, 2011, Impedimetric Immunosensor for Detection of Plum Pox Virus in Plant Extracts, Electroanalysis, 23, 2197, 10.1002/elan.201100152 Chiriacò, 2018, Development of a Lab-on-a-Chip Method for Rapid Assay of Xylella Fastidiosa Subsp. Pauca Strain CoDiRO, Sci. Rep., 8, 7376, 10.1038/s41598-018-25747-4 Haji-Hashemi, 2019, Simple and Effective Label Free Electrochemical Immunosensor for Fig Mosaic Virus Detection, Anal. Biochem., 566, 102, 10.1016/j.ab.2018.11.017 Jiao, 2000, Sensitive Detection of a Plant Virus by Electrochemical Enzyme-Linked Immunoassay, Fresenius J. Anal. Chem., 367, 667, 10.1007/s002160000423 Damborský, 2016, Optical Biosensors, Essays Biochem., 60, 91, 10.1042/EBC20150010 Parolo, 2012, Paper-Based Nanobiosensors for Diagnostics, Chem. Soc. Rev., 42, 450, 10.1039/C2CS35255A Tsuda, 1992, A Novel Detection and Identification Technique for Plant Viruses: Rapid Immunofilter Paper Assay (RIPA), Plant Dis., 76, 466, 10.1094/PD-76-0466 Feng, 2015, Development of an Immunochromatographic Strip for Rapid Detection of Pantoea Stewartii Subsp. Stewartii, Sensors, 15, 4291, 10.3390/s150204291 Salomone, 2004, Reliability of detection of citrus tristeza virus by an immunochromatographic lateral flow assay in comparison with elisa, J. Plant Pathol., 86, 43 Charlermroj, 2013, Multiplex Detection of Plant Pathogens Using a Microsphere Immunoassay Technology, PLoS ONE, 8, 10.1371/journal.pone.0062344 Charlermroj, 2017, An Accurate, Specific, Sensitive, High-Throughput Method Based on a Microsphere Immunoassay for Multiplex Detection of Three Viruses and Bacterial Fruit Blotch Bacterium in Cucurbits, J. Virol. Methods, 247, 6, 10.1016/j.jviromet.2017.05.006 Zhang, 2013, Simultaneous Detection of Clavibacter Michiganensis Subsp. Nebraskensis and Pantoea Stewartii Subsp. Stewartii Based on Microsphere Immunoreaction, J. Biomol. Screen, 18, 474, 10.1177/1087057112467818 Candresse, T., Lot, H., German-Retana, S., Krause-Sakate, R., Thomas, J., Souche, S., Delaunay, T., Lanneau, M., Le Gall, O., 2007. Analysis of the Serological Variability of Lettuce Mosaic Virus Using Monoclonal Antibodies and Surface Plasmon Resonance Technology. Journal of General Virology 2007, 88 (9), 2605–2610. https://doi.org/10.1099/vir.0.82980-0. Torrance, 2006, Oriented Immobilisation of Engineered Single-Chain Antibodies to Develop Biosensors for Virus Detection, J. Virol. Methods, 134, 164, 10.1016/j.jviromet.2005.12.012 Zezza, 2006, Detection of Fusarium Culmorum in Wheat by a Surface Plasmon Resonance-Based DNA Sensor, J. Microbiol. Methods, 66, 529, 10.1016/j.mimet.2006.02.003 Lin, 2014, Direct Detection of Orchid Viruses Using Nanorod-Based Fiber Optic Particle Plasmon Resonance Immunosensor, Biosens. Bioelectron., 51, 371, 10.1016/j.bios.2013.08.009 Chen, 2019, Rapid and Sensitive Detection of Shigella Flexneri Using Fluorescent Microspheres as Label for Immunochromatographic Test Strip, Ann. Transl. Med., 7, 565, 10.21037/atm.2019.09.46 Li, 2010, Gold Nanoparticle-Based Biosensors, Gold Bull., 43, 29, 10.1007/BF03214964 Wang, 2016, High-Throughput Optical Sensing Immunoassays on Smartphone, Anal. Chem., 88, 8302, 10.1021/acs.analchem.6b02211 Notomi, 2000, Loop-Mediated Isothermal Amplification of DNA, Nucl. Acids Res., 28, 10.1093/nar/28.12.e63 Li, 2017, Loop-Mediated Isothermal Amplification (LAMP): A Novel Rapid Detection Platform for Pathogens, Microb. Pathog., 107, 54, 10.1016/j.micpath.2017.03.016 Liu, 2013, Development of Loop-Mediated Isothermal Amplification for Detection of Leifsonia Xyli Subsp. Xyli in Sugarcane, BioMed. Res. Int., 2013 Keizerweerd, 2015, Development of a Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) Assay for the Detection of Sugarcane Mosaic Virus and Sorghum Mosaic Virus in Sugarcane, J. Virol. Methods, 212, 23, 10.1016/j.jviromet.2014.10.013 Kogovšek, 2015, LAMP Assay and Rapid Sample Preparation Method for On-Site Detection of Flavescence Dorée Phytoplasma in Grapevine, Plant Pathol., 64, 286, 10.1111/ppa.12266 Feng, 2018, Development of a Reverse Transcription-Recombinase Polymerase Amplification Assay for Detection of Sugarcane Yellow Leaf Virus, Sugar Tech, 20, 700, 10.1007/s12355-018-0602-6 Crannell, 2014, Equipment-Free Incubation of Recombinase Polymerase Amplification Reactions Using Body Heat, PLoS ONE, 9, 10.1371/journal.pone.0112146 Mahalanabis, M., Do, J., ALMuayad, H., Zhang, J. Y., Klapperich, C. M., 2010. An Integrated Disposable Device for DNA Extraction and Helicase Dependent Amplification. Biomed. Microdevices, 12 (2), 353–359. https://doi.org/10.1007/s10544-009-9391-8. Wu, 2015, Identification of Viruses and Viroids by Next-Generation Sequencing and Homology-Dependent and Homology-Independent Algorithms, Annu. Rev. Phytopathol., 10.1146/annurev-phyto-080614-120030 Egan, 2012, Applications of Next-Generation Sequencing in Plant Biology, Am. J. Bot., 99, 175, 10.3732/ajb.1200020 Adams, 2013, Use of Next-Generation Sequencing for the Identification and Characterization of Maize Chlorotic Mottle Virus and Sugarcane Mosaic Virus Causing Maize Lethal Necrosis in Kenya, Plant. Pathol., 62, 741, 10.1111/j.1365-3059.2012.02690.x Thudi, 2012, Current State-of-Art of Sequencing Technologies for Plant Genomics Research, Brief Funct Genomics, 11, 3, 10.1093/bfgp/elr045 Bronzato Badial, 2018, Nanopore Sequencing as a Surveillance Tool for Plant Pathogens in Plant and Insect Tissues, Plant Dis., 102, 1648, 10.1094/PDIS-04-17-0488-RE Loit, 2019, Relative Performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens, Appl. Environ. Microbiol., 85, e01368, 10.1128/AEM.01368-19 Tedersoo, 2018, PacBio Metabarcoding of Fungi and Other Eukaryotes: Errors, Biases and Perspectives, New Phytologist, 217, 1370, 10.1111/nph.14776 Taylor, 2003, Development of PCR-Based Markers for Detection of Leifsonia Xyli Subsp. Xyli in Fibrovascular Fluid of Infected Sugarcane Plants, Australas, Plant Pathol., 32, 367 Prasannakumar, 2021, LAMP-Based Foldable Microdevice Platform for the Rapid Detection of Magnaporthe Oryzae and Sarocladium Oryzae in Rice Seed, Sci. Rep., 11, 178, 10.1038/s41598-020-80644-z Schwenkbier, 2015, Non-Instrumented DNA Isolation, Amplification and Microarray-Based Hybridization for a Rapid on-Site Detection of Devastating Phytophthora Kernoviae, Analyst, 140, 6610, 10.1039/C5AN00855G Cebula, 2019, Detection of the Plant Pathogen Pseudomonas Syringae Pv. Lachrymans on Antibody-Modified Gold Electrodes by Electrochemical Impedance Spectroscopy, Sensors, 19, 5411, 10.3390/s19245411 Zhao, 2014, Dual Amplified Electrochemical Immunosensor for Highly Sensitive Detection of Pantoea Stewartii Sbusp. Stewartii, ACS Appl. Mater. Interfaces, 6, 21178, 10.1021/am506104r Wilisiani, 2019, Development of a LAMP Assay with a Portable Device for Real-Time Detection of Begomoviruses under Field Conditions, J. Virol. Methods, 265, 71, 10.1016/j.jviromet.2018.10.005 Thangavelu, 2022, Ultrasensitive Nano-Gold Labelled, Duplex Lateral Flow Immunochromatographic Assay for Early Detection of Sugarcane Mosaic Viruses, Sci. Rep., 12, 4144, 10.1038/s41598-022-07950-6 Naidoo, 2017, Modified RS-LAMP Assay and Use of Lateral Flow Devices for Rapid Detection of Leifsonia Xyli Subsp. Xyli, Lett. Appl. Microbiol., 65, 496, 10.1111/lam.12799 Doan, 2014, Development and Evaluation of AmplifyRP Acceler8 Diagnostic Assay for the Detection of Fusarium Oxysporum f. Sp. Vasinfectum Race 4 in Cotton, Plant Health Progress, 15, 48, 10.1094/PHP-RS-13-0115 Cesbron, 2022, Evaluation of the AmplifyRP® XRT+ Kit for the Detection of Xylella Fastidiosa by Recombinase Polymerase Amplification (RPA), PhytoFrontiersTM, 10.1094/PHYTOFR-03-22-0025-FI Verosloff, 2019, PLANT-Dx: A Molecular Diagnostic for Point-of-Use Detection of Plant Pathogens, ACS Synth. Biol., 8, 902, 10.1021/acssynbio.8b00526 Koo, 2013, Development of a Real-Time Microchip PCR System for Portable Plant Disease Diagnosis, PLoS ONE, 8, 10.1371/journal.pone.0082704 Versalovic, 2002, Molecular Detection and Genotyping of Pathogens: More Accurate and Rapid Answers, Trends Microbiol., 10, s15, 10.1016/S0966-842X(02)02438-1 Fordyce, 2018, Digital Imaging Combined with Genome-Wide Association Mapping Links Loci to Plant-Pathogen Interaction Traits1[OPEN], Plant Physiol, 178, 1406, 10.1104/pp.18.00851 Aubry, 2019, The Future of Digital Sequence Information for Plant Genetic Resources for Food and Agriculture, Front. Plant Sci., 10, 1046, 10.3389/fpls.2019.01046 Noh, 2015, Sensitive and Direct Electrochemical Detection of Double-Stranded DNA Utilizing Alkaline Phosphatase-Labelled Zinc Finger Proteins, Analyst, 140, 3947, 10.1039/C5AN00623F González-Domínguez, 2015, A Mechanistic Model of Botrytis Cinerea on Grapevines That Includes Weather, Vine Growth Stage, and the Main Infection Pathways, PLoS ONE, 10, 10.1371/journal.pone.0140444 Chiu, 2010, Matrix Effects—A Challenge toward Automation of Molecular Analysis. JALA, J. Assoc. Lab. Autom., 15, 233, 10.1016/j.jala.2010.02.001 Bilkiss, 1889, Advanced Diagnostic Approaches for Necrotrophic Fungal Pathogens of Temperate Legumes With a Focus on Botrytis Spp, Front. Microbiol., 2019, 10 Berensmeier, 2006, Magnetic Particles for the Separation and Purification of Nucleic Acids, Appl. Microbiol. Biotechnol., 73, 495, 10.1007/s00253-006-0675-0