A two-phase model for the non-processive biosynthesis of homogalacturonan polysaccharides by the GAUT1:GAUT7 complex
Tài liệu tham khảo
Atmodjo, 2013, Evolving views of pectin biosynthesis, Annu. Rev. Plant Biol, 64, 747, 10.1146/annurev-arplant-042811-105534
Tan, 2013, An Arabidopsis cell wall proteoglycan consists of pectin and arabinoxylan covalently linked to an arabinogalactan protein, Plant Cell, 25, 270, 10.1105/tpc.112.107334
Cosgrove, 2016, Catalysts of plant cell wall loosening, F1000Res, 5, 10.12688/f1000research.7180.1
Voxeur, 2016, Cell wall integrity signaling in plants: “To grow or not to grow that's the question”, Glycobiology, 26, 950, 10.1093/glycob/cww029
Dick-Pérez, 2011, Structure and interactions of plant cell-wall polysaccharides by two- and three-dimensional magic-angle-spinning solid-state NMR, Biochemistry, 50, 989, 10.1021/bi101795q
Wang, 2012, Pectin-cellulose interactions in the Arabidopsis primary cell wall from two-dimensional magic-angle-spinning solid-state nuclear magnetic resonance, Biochemistry, 51, 9846, 10.1021/bi3015532
Wang, 2016, Solid-state NMR investigations of cellulose structure and interactions with matrix polysaccharides in plant primary cell walls, J. Exp. Bot, 67, 503, 10.1093/jxb/erv416
Lionetti, 2010, Engineering the cell wall by reducing de-methyl-esterified homogalacturonan improves saccharification of plant tissues for bioconversion, Proc. Natl. Acad. Sci. U.S.A, 107, 616, 10.1073/pnas.0907549107
Chung, 2014, Deletion of a gene cluster encoding pectin degrading enzymes in Caldicellulosiruptor bescii reveals an important role for pectin in plant biomass recalcitrance, Biotechnol. Biofuels, 7, 147, 10.1186/s13068-014-0147-1
Biswal, 2018, Working towards recalcitrance mechanisms: increased xylan and homogalacturonan production by overexpression of GAlactUronosylTransferase12 (GAUT12) causes increased recalcitrance and decreased growth in Populus, Biotechnol. Biofuels, 11, 9, 10.1186/s13068-017-1002-y
Biswal, 2015, Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock, Biotechnol. Biofuels, 8, 41, 10.1186/s13068-015-0218-y
Biswal, 2018, Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis, Nat. Biotechnol, 36, 249, 10.1038/nbt.4067
Lombard, 2014, The carbohydrate-active enzymes database (CAZy) in 2013, Nucleic Acids Res, 42, D490, 10.1093/nar/gkt1178
Sterling, 2006, Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferase, Proc. Natl. Acad. Sci. U.S.A, 103, 5236, 10.1073/pnas.0600120103
Atmodjo, 2011, Galacturonosyltransferase (GAUT)1 and GAUT7 are the core of a plant cell wall pectin biosynthetic homogalacturonan:galacturonosyltransferase complex, Proc. Natl. Acad. Sci. U.S.A, 108, 20225, 10.1073/pnas.1112816108
Petersen, 2009, Assay and heterologous expression in Pichia pastoris of plant cell wall type-II membrane anchored glycosyltransferases, Glycoconj. J, 26, 1235, 10.1007/s10719-009-9242-0
Culbertson, 2015, The glycosyltransferases involved in synthesis of plant cell wall polysaccharides: present and future, JSM Enzymol. Protein Sci, 1
Wu, 2010, Functional identification of two nonredundant Arabidopsis α(1,2)fucosyltransferases specific to arabinogalactan proteins, J. Biol. Chem, 285, 13638, 10.1074/jbc.M110.102715
Geshi, 2013, A galactosyltransferase acting on arabinogalactan protein glycans is essential for embryo development in Arabidopsis, Plant J, 76, 128
Liwanag, 2012, Pectin biosynthesis: GALS1 in Arabidopsis thaliana is a β-1,4-galactan β-1,4-galactosyltransferase, Plant Cell, 24, 5024, 10.1105/tpc.112.106625
Chiniquy, 2012, XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan, Proc. Natl. Acad. Sci. U.S.A, 109, 17117, 10.1073/pnas.1202079109
Knoch, 2013, A β-glucuronosyltransferase from Arabidopsis thaliana involved in biosynthesis of type II arabinogalactan has a role in cell elongation during seedling growth, Plant J, 76, 1016, 10.1111/tpj.12353
Basu, 2013, Functional identification of a hydroxyproline-o-galactosyltransferase specific for arabinogalactan protein biosynthesis in Arabidopsis, J. Biol. Chem, 288, 10132, 10.1074/jbc.M112.432609
Urbanowicz, 2014, Two Arabidopsis proteins synthesize acetylated xylan in vitro, Plant J, 80, 197, 10.1111/tpj.12643
Urbanowicz, 2017, Structural, mutagenic and in silico studies of xyloglucan fucosylation in Arabidopsis thaliana suggest a water-mediated mechanism, Plant J, 91, 931, 10.1111/tpj.13628
Meng, 2013, Enzymatic basis for N-glycan sialylation: structure of rat α2,6-sialyltransferase (ST6GAL1) reveals conserved and unique features for glycan sialylation, J. Biol. Chem, 288, 34680, 10.1074/jbc.M113.519041
Praissman, 2014, B4GAT1 is the priming enzyme for the LARGE-dependent functional glycosylation of α-dystroglycan, eLife, 3, 10.7554/eLife.03943
Praissman, 2016, The functional O-mannose glycan on α-dystroglycan contains a phospho-ribitol primed for matriglycan addition, eLife, 5, 10.7554/eLife.14473
Subedi, 2015, High yield expression of recombinant human proteins with the transient transfection of HEK293 cells in suspension, J. Vis. Exp, 10.3791/53568
Halmo, 2017, Protein O-linked mannose β-1,4-N-acetylglucosaminyl-transferase 2 (POMGNT2) is a gatekeeper enzyme for functional glycosylation of α-dystroglycan, J. Biol. Chem, 292, 2101, 10.1074/jbc.M116.764712
Sheikh, 2017, Rapid screening of sugar-nucleotide donor specificities of putative glycosyltransferases, Glycobiology, 27, 206, 10.1093/glycob/cww114
Moremen, 2018, Expression system for structural and functional studies of human glycosylation enzymes, Nat. Chem. Biol, 14, 156, 10.1038/nchembio.2539
Kellokumpu, 2016, Glycosyltransferase complexes in eukaryotes: long-known, prevalent but still unrecognized, Cell Mol. Life Sci, 73, 305, 10.1007/s00018-015-2066-0
Oikawa, 2013, Golgi-localized enzyme complexes for plant cell wall biosynthesis, Trends Plant Sci, 18, 49, 10.1016/j.tplants.2012.07.002
Zeng, 2016, Asparagus IRX9, IRX10, and IRX14A are components of an active xylan backbone synthase complex that forms in the Golgi apparatus, Plant Physiol, 171, 93, 10.1104/pp.15.01919
Jiang, 2016, Composition, assembly, and trafficking of a wheat xylan synthase complex, Plant Physiol, 170, 1999, 10.1104/pp.15.01777
Yasui, 2009, In vitro synthesis of polygalacturonic acid, 167
Akita, 2002, Successive glycosyltransfer activity and enzymatic characterization of pectic polygalacturonate 4-α-galacturonosyltransferase solubilized from pollen tubes of Petunia axillaris using pyridylaminated oligogalacturonates as substrates, Plant Physiol, 130, 374, 10.1104/pp.005587
Doong, 1998, Solubilization and characterization of a galacturonosyltransferase that synthesizes the pectic polysaccharide homogalacturonan, Plant J, 13, 363, 10.1046/j.1365-313X.1998.00042.x
Ishii, 2002, A sensitive and rapid bioassay of homogalacturonan synthase using 2-aminobenzamide-labeled oligogalacturonides, Plant Cell Physiol, 43, 1386, 10.1093/pcp/pcf150
Scheller, 1999, Pectin biosynthesis: a solubilized α1,4-galacturonosyltransferase from tobacco catalyzes the transfer of galacturonic acid from UDP-galacturonic acid onto the non-reducing end of homogalacturonan, Planta, 207, 512, 10.1007/s004250050511
Persson, 2001, Crystal structure of the retaining galactosyltransferase LgtC from Neisseria meningitidis in complex with donor and acceptor sugar analogs, Nat. Struct. Biol, 8, 166, 10.1038/84168
Gibbons, 2002, Crystal structure of the autocatalytic initiator of glycogen biosynthesis, glycogenin, J. Mol. Biol, 319, 463, 10.1016/S0022-2836(02)00305-4
Cornish-Bowden, 2012, 210
Piszkiewicz, 1977, 97
Chaikuad, 2011, Conformational plasticity of glycogenin and its maltosaccharide substrate during glycogen biogenesis, Proc. Natl. Acad. Sci. U.S.A, 108, 21028, 10.1073/pnas.1113921108
Ly, 2002, Mechanistic studies of a retaining α-galactosyltransferase from Neisseria meningitidis, Biochemistry, 41, 5075, 10.1021/bi012031s
Doong, 1995, Cell-free synthesis of pectin (identification and partial characterization of polygalacturonate 4-α-galacturonosyltransferase and its products from membrane preparations of tobacco cell-suspension cultures), Plant Physiol, 109, 141, 10.1104/pp.109.1.141
Keys, 2014, Engineering the product profile of a polysialyltransferase, Nat. Chem. Biol, 10, 437, 10.1038/nchembio.1501
Levengood, 2011, Monitoring processivity and length control of a carbohydrate polymerase, J Am. Chem. Soc, 133, 12758, 10.1021/ja204448t
Mort, 1991, Problems encountered during the extraction, purification, and chromatography of pectic fragments, and some solutions to them, Carbohydr. Res, 215, 219, 10.1016/0008-6215(91)84022-7
Pattathil, 2010, A comprehensive toolkit of plant cell wall glycan-directed monoclonal antibodies, Plant Physiol, 153, 514, 10.1104/pp.109.151985
Bloom, 2001, Polymerase processivity: measurement and mechanisms, 1
Fiebig, 2018, Efficient solid-phase synthesis of meningococcal capsular oligosaccharides enables simple and fast chemoenzymatic vaccine production, J. Biol. Chem, 293, 953, 10.1074/jbc.RA117.000488
Bambara, 1995, Methods of analyzing processivity, Methods Enzymol, 262, 270, 10.1016/0076-6879(95)62023-0
Nardone, 1986, Differences in the kinetic properties of BamHI endonuclease and methylase with linear DNA substrates, J. Biol. Chem, 261, 12128, 10.1016/S0021-9258(18)67212-6
Yin, 2010, Evolution and function of the plant cell wall synthesis-related glycosyltransferase family 8, Plant Physiol, 153, 1729, 10.1104/pp.110.154229
Culbertson, 2016, Enzymatic activity of xyloglucan xylosyltransferase 5, Plant Physiol, 171, 1893, 10.1104/pp.16.00361
Dilokpimol, 2014, Galactosyltransferases from Arabidopsis thaliana in the biosynthesis of type II arabinogalactan: molecular interaction enhances enzyme activity, BMC Plant Biol, 14, 90, 10.1186/1471-2229-14-90
Basu, 2015, A small multigene hydroxyproline-O-galactosyltransferase family functions in arabinogalactan-protein glycosylation, growth and development in Arabidopsis, BMC Plant Biol, 15, 295, 10.1186/s12870-015-0670-7
Rennie, 2012, Three members of the Arabidopsis glycosyltransferase family 8 are xylan glucuronosyltransferases, Plant Physiol, 159, 1408, 10.1104/pp.112.200964
Lee, 2012, Arabidopsis GUX proteins are glucuronyltransferases responsible for the addition of glucuronic acid side chains onto xylan, Plant Cell Physiol, 53, 1204, 10.1093/pcp/pcs064
Vuttipongchaikij, 2012, Arabidopsis GT34 family contains five xyloglucan α-1,6-xylosyltransferases, New Phytol, 195, 585, 10.1111/j.1469-8137.2012.04196.x
Ogawa-Ohnishi, 2015, Identification of three potent hydroxyproline O-galactosyltransferases in Arabidopsis, Plant J, 81, 736, 10.1111/tpj.12764
Laursen, 2018, Bifunctional glycosyltransferases catalyze both extension and termination of pectic galactan oligosaccharides, Plant J, 94, 340, 10.1111/tpj.13860
Raga-Carbajal, 2016, Size product modulation by enzyme concentration reveals two distinct levan elongation mechanisms in Bacillus subtilis levansucrase, Glycobiology, 26, 377, 10.1093/glycob/cwv112
Forsee, 2006, Role of the carbohydrate binding site of the Streptococcus pneumoniae capsular polysaccharide type 3 synthase in the transition from oligosaccharide to polysaccharide synthesis, J. Biol. Chem, 281, 6283, 10.1074/jbc.M511124200
Morgan, 2013, Crystallographic snapshot of cellulose synthesis and membrane translocation, Nature, 493, 181, 10.1038/nature11744
Breyer, 2001, A structural basis for processivity, Protein Sci, 10, 1699, 10.1110/ps.10301
Davis, 2010, Arabidopsis mannan synthase CSLA9 and glucan synthase CSLC4 have opposite orientations in the Golgi membrane, Plant J, 64, 1028, 10.1111/j.1365-313X.2010.04392.x
Pauly, 2016, Biosynthesis of the plant cell wall matrix polysaccharide xyloglucan, Annu. Rev. Plant Biol, 67, 235, 10.1146/annurev-arplant-043015-112222
Vionnet, 2007, Successive glycosyltransfer of sialic acid by Escherichia coli K92 polysialyltransferase in elongation of oligosialic acceptors, Glycobiology, 17, 735, 10.1093/glycob/cwm032
Chavaroche, 2010, In vitro synthesis of heparosan using recombinant Pasteurella multocida heparosan synthase PmHS2, Appl. Microbiol. Biotechnol, 85, 1881, 10.1007/s00253-009-2214-2
DeAngelis, 2002, Identification and molecular cloning of a heparosan synthase from Pasteurella multocida type D, J. Biol. Chem, 277, 7209, 10.1074/jbc.M112130200
Fiebig, 2014, Functional expression of the capsule polymerase of Neisseria meningitidis serogroup X: a new perspective for vaccine development, Glycobiology, 24, 150, 10.1093/glycob/cwt102
Fiebig, 2014, Molecular cloning and functional characterization of components of the capsule biosynthesis complex of Neisseria meningitidis serogroup A: toward in vitro vaccine production, J. Biol. Chem, 289, 19395, 10.1074/jbc.M114.575142
Litschko, 2015, The capsule polymerase CslB of Neisseria meningitidis serogroup L catalyzes the synthesis of a complex trimeric repeating unit comprising glycosidic and phosphodiester linkages, J. Biol. Chem, 290, 24355, 10.1074/jbc.M115.678094
Weigel, 2015, Hyaluronan synthase assembles chitin oligomers with -GlcNAc(α1→)UDP at the reducing end, Glycobiology, 25, 632, 10.1093/glycob/cwv006
Weigel, 2017, Hyaluronan synthase assembles hyaluronan on a [GlcNAc(β1,4)]n-GlcNAc(α1→)UDP primer and hyaluronan retains this residual chitin oligomer as a cap at the nonreducing end, Glycobiology, 27, 536
Liljebjelke, 1995, Enzymatic synthesis and purification of uridine diphosphate [14C]galacturonic acid: a substrate for pectin biosynthesis, Anal. Biochem, 225, 296, 10.1006/abio.1995.1158
Laemmli, 1970, Cleavage of structural proteins during the assembly of the head of bacteriophage T4, Nature, 227, 680, 10.1038/227680a0
Sterling, 2005, Development of a filter assay for measuring homogalacturonan: α-(1,4)-galacturonosyltransferase activity, Anal. Biochem, 343, 231, 10.1016/j.ab.2005.05.037
Jacobs, 2001, Enhancement of the quality of MALDI mass spectra of highly acidic oligosaccharides by using a nafion-coated probe, Anal. Chem, 73, 405, 10.1021/ac001222i
Pattathil, 2012, Immunological approaches to plant cell wall and biomass characterization: glycome profiling, Methods Mol. Biol, 908, 61
Benen, 1999, Kinetic characterization of Aspergillus niger N400 endopolygalacturonases I, II and C, Eur. J. Biochem, 259, 577, 10.1046/j.1432-1327.1999.00080.x
