Deciphering a mechanism of membrane permeabilization by α-hordothionin peptide

Biochimica et Biophysica Acta (BBA) - Biomembranes - Tập 1808 - Trang 1737-1745 - 2011
Svetlana V. Oard1
1School of Plant, Environmental, and Soil Sciences, Louisiana State Agricultural Center, Louisiana State University, Baton Rouge, LA 70803, USA

Tài liệu tham khảo

Hancock, 1998, Cationic peptides: a new source of antibiotics, Trends Biotech., 16, 82, 10.1016/S0167-7799(97)01156-6 Dathe, 1999, Structural features of helical antimicrobial peptides: their potential to modulate activity on model membranes and biological cells, Biochem. Biophys. Acta, 1462, 71, 10.1016/S0005-2736(99)00201-1 Aerts, 2008, The mode of antifungal action of plant, insect and human defensins, Cell. Mol. Life Sci., 65, 2069, 10.1007/s00018-008-8035-0 Bechinger, 2004, Structure and function of lytic peptides, Crit. Rev. Plant Sci., 23, 271, 10.1080/07352680490452825 Zasloff, 2002, Antimicrobial peptides of multicellular organisms, Nature, 415, 389, 10.1038/415389a Zasloff, 1987, Magainins, a class of antimicrobial peptides from Xenopus skin: isolation, characterization of two active forms, and partial cDNA sequence of a precursor, Proc. Natl Acad. Sci. USA, 84, 5449, 10.1073/pnas.84.15.5449 Powell, 1995, Synthetic antimicrobial peptide design, MPMI, 8, 792, 10.1094/MPMI-8-0792 Florack, 1994, Thionins: properties, possible biological roles and mechanisms of action, Plant Mol. Biol., 26, 25, 10.1007/BF00039517 García-Olmedo, 1989, The thionins: a protein family that includes purothionins, viscotoxins and crambins, Oxf. Surv. Plant Mol. Cell Biol. Oxf. Surv. Plant Mol. Cell Biol., 6, 31 Stec, 2004, Proposal for molecular mechanism of thionins deduced from physicochemical studies of plant toxins, J. Pep. Res., 64, 210, 10.1111/j.1399-3011.2004.00187.x Hughes, 2000, The cytotoxic plant protein, b-purothionin, forms ion channels in lipid membranes, J. Biol. Chem., 275, 823, 10.1074/jbc.275.2.823 Niidome, 1999, Effect of amino acid substitution in amphiphilic a-helical peptides on peptide-phospholipid membrane interaction, J. Pep. Sci., 5, 298, 10.1002/(SICI)1099-1387(199907)5:7<298::AID-PSC197>3.0.CO;2-5 Richard, 2005, Structure of beta-purothionin in membranes: a two-dimensional infrared correlation spectroscopy study, Biochemistry, 44, 52, 10.1021/bi048443t Bechinger, 2008, A dynamic view of peptides and proteins in membranes, Cell. Mol. Life Sci., 65, 3028, 10.1007/s00018-008-8125-z Thevissen, 1999, Permeability of fungal membranes by plant defensins inhibits fungal growth, Appl. Env. Microbiol., 63, 5451, 10.1128/AEM.65.12.5451-5458.1999 Oard, 2004, Characterization of antimicrobial peptides against a US strain of the rice pathogen Rhizoctonia solani, J. Appl. Microbiol., 97, 169, 10.1111/j.1365-2672.2004.02291.x Oard, 2006, Expression of the antimicrobial peptides in plants to control phytopathogenic bacteria and fungi, Plan Cell Rep., 25, 561, 10.1007/s00299-005-0102-5 Stec, 1995, Refinement of purothionins reveals solute particles important for lattice formation and toxicity. Part 2: structure of beta-purothionin at 1.7 angstroms resolution, Acta Crystallogr Sect. D, 51, 914, 10.1107/S0907444995002976 Ponz, 1986, Cloning and nucleotide sequence of a cDNA encoding the precursor of the barley toxin alpha-hordothionin, Eur. J. Biochem., 156, 131, 10.1111/j.1432-1033.1986.tb09557.x Stec, 2006, Plant thionins—the structural perspective, Cell. Mol. Life Sci., 63, 1370, 10.1007/s00018-005-5574-5 Sels, 2008, Plant pathogenesis-related (PR) proteins: a focus on PR peptides, Plant Physiol. Biochem., 46, 941, 10.1016/j.plaphy.2008.06.011 Rao, 1995, Refinement of purothionins reveals solute particles important for latice formation and toxicity. 1. a1-purothionin revisited, Acta Crystallog. Sect. D, D51, 904, 10.1107/S0907444995002964 Richard, 2002, Interaction between β-purothionin and dimyristoylphosphatidylglycerol: A 31P-NMR and infrared spectroscopic study, Biophys. J., 83, 2074, 10.1016/S0006-3495(02)73968-4 Caaveiro, 1998, Interaction of wheat {alpha}-thionin with large unilamellar vesicles, Protein Sci., 7, 2567, 10.1002/pro.5560071210 Vila-Perello, 2005, Structural dissection of a highly knotted peptide reveals minimal motif with antimicrobial activity, J. Biol. Chem., 280, 1661, 10.1074/jbc.M410577200 Oard, 2006, Mechanism of ß-purothionin antimicrobial peptide inhibition by metal ions: molecular dynamics simulation study, Biophys. Chem., 121, 30, 10.1016/j.bpc.2005.12.004 Oard, 2007, Is there a difference in metal ion-based inhibition between members of thionin family: molecular dynamics simulation study, Biophys. Chem., 130, 65, 10.1016/j.bpc.2007.07.005 Oard, 2010, Structural changes induced in thionins by chloride anions as determined by molecular dynamics simulations, Biophys. Chem., 147, 42, 10.1016/j.bpc.2009.12.009 Matsuzaki, 1996, An antimicrobial peptide, magainin 2, induced rapid flip-flop of phospholipids coupled with pore formation and peptide translocation, Biochemistry, 35, 11361, 10.1021/bi960016v Yang, 2001, Barrel-stave model or toroidal model? A case study on melittin pores, Biophys. J., 81, 1475, 10.1016/S0006-3495(01)75802-X Gomes, 2009, Aquaporins are multifunctional water and solute transporters highly divergent in living organisms, Biochim. Biophys. Acta, 1788, 1213, 10.1016/j.bbamem.2009.03.009 Pearlman, 1995, AMBER, a computer program for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to elucidate the structures and energies of molecules, Comp. Phys. Commun., 91, 1, 10.1016/0010-4655(95)00041-D Nemoto, 2002, Flexibility of a loop in a pheromone binding protein from Bombyx mori: a molecular dynamics simulation, Chem Bio Info. J., 2, 32 Wang, 2000, How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?, J. Comput. Chem., 21, 1049, 10.1002/1096-987X(200009)21:12<1049::AID-JCC3>3.0.CO;2-F Dang, 1987, Simple intramolecular model potentials for water, J. Phys. Chem., 91, 3349, 10.1021/j100296a048 Wu, 2006, Flexible simple point-charge water model with improved liquid-state properties, J. Chem. Phys., 124, 024503, 10.1063/1.2136877 Raabe, 2007, Influence of bond flexibility on the vapor–liquid phase equilibria of water, J. Chem. Phys., 126, 044701, 10.1063/1.2428302 Joung, 2009, Molecular dynamics simulations of the dynamic and energetic properties of alkali and halide ions using water-model-specific ion parameters, J. Phys. Chem. B, 113, 13279, 10.1021/jp902584c Kabsch, 1983, Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features, Biopolymers, 22, 2577, 10.1002/bip.360221211 Humphrey, 1996, VMD: visual molecular dynamics, J. Mol. Graph., 14, 33, 10.1016/0263-7855(96)00018-5 Gasteiger, 1980, Iterative partial equalization of orbital electronegativity—a rapid access to atomic charges, Tetrahedron, 36, 3219, 10.1016/0040-4020(80)80168-2 Huey, 2007, A semiempirical free energy force field with charge-based desolvation, J. Comput. Chem., 28, 1145, 10.1002/jcc.20634 Wang, 1993, Pyrularia thionin binding to and the role of tryptophan-8 in the enhancement of phosphatidylserine domains in erythrocyte membranes, Biochemistry, 32, 12283, 10.1021/bi00097a003 Sousa, 2006, Protein–ligand docking: current status and future challenges, Proteins, 65, 15, 10.1002/prot.21082 Qiu, 2010, Dynamic and energetic mechanisms for the distinct permeation rate in AQP1 and AQP0, Biochim. Biophys. Acta, 1798, 318, 10.1016/j.bbamem.2009.11.015 Bechinger, 2006, Detergent-like actions of linear amphipathic cationic antimicrobial peptides, Biochim. Biophys. Acta, 1758, 1529, 10.1016/j.bbamem.2006.07.001 Wiener, 1992, Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. III. Complete structure, Biophys. J., 61, 434, 10.1016/S0006-3495(92)81849-0 Chattopadhyay, 1987, Parallax method for direct measurement of membrane penetration depth utilizing fluorescence quenching by spin-labeled phospholipids, Biochemistry, 26, 39, 10.1021/bi00375a006 Llanos, 2006, Puroindoline-a and a1-purothionin form ion channels in giant liposomes but exert different toxic actions on murine cells, FEBS J., 273, 1710, 10.1111/j.1742-4658.2006.05185.x Gurtovenko, 2008, Chemically induced phospholipid translocation across biological membranes, Langmuir, 24, 9656, 10.1021/la801431f Huang, 1997, Interactions of thionin from Pyrularia pubera with dipalmitoylphosphatidylglycerol large unilamellar vesicles, Biochemistry, 36, 2860, 10.1021/bi962405v Fracki, 1992, Role of Tyr and Trp in membrane responses of Pyrularia thionin determined by optical and NMR spectra following Tyr iodination and Trp modification, Toxicon, 30, 1427, 10.1016/0041-0101(92)90518-A Rothbard, 2005, Adaptive translocation: the role of hydrogen bonding and membrane potential in the uptake of guanidinium-rich transporters into cells, Adv. Drug Deliv. Rev., 57, 495, 10.1016/j.addr.2004.10.003 Lin, 2002, Bridging implicit and explicit solvent approaches for membrane electrostatics, Biophys. J., 83, 1374, 10.1016/S0006-3495(02)73908-8