Diet and the development of the human intestinal microbiome

Aagaard, 2014, The placenta harbors a unique microbiome., italicSci. Transl. Med./italic, 6, 10.1126/scitranslmed.3008599

Arumugam, 2011, Enterotypes of the human gut microbiome., italicNature/italic, 473, 174, 10.1038/nature09944

Bartosch, 2004, Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota., italicAppl. Environ. Microbiol./italic, 70, 3575, 10.1128/AEM.70.6.3575-3581.2004

Bergström, 2014, Establishment of intestinal microbiota during early life: a longitudinal, explorative study of a large cohort of Danish infants., italicAppl. Environ. Microbiol./italic, 80, 2889, 10.1128/AEM.00342-14

Bezirtzoglou, 2011, Microbiota profile in feces of breast-and formula-fed newborns by using fluorescence in situ hybridization (FISH)., italicAnaerobe/italic, 17, 478, 10.1016/j.anaerobe.2011.03.009

Britton, 2013, Ageing and the gut., italicProc. Nutr. Soc./italic, 72, 173, 10.1017/S0029665112002807

Cabrera-Rubio, 2012, The human milk microbiome changes over lactation and is shaped by maternal weight and mode of delivery., italicAm. J. Clin. Nutr./italic, 96, 544, 10.3945/ajcn.112.037382

Claesson, 2011, Composition, variability, and temporal stability of the intestinal microbiota of the elderly., italicProc. Natl. Acad. Sci. U.S.A./italic, 108(Suppl. 1), 4586, 10.1073/pnas.1000097107

Claesson, 2012, Gut microbiota composition correlates with diet and health in the elderly., italicNature/italic, 488, 178, 10.1038/nature11319

Cotillard, 2013, Dietary intervention impact on gut microbial gene richness., italicNature/italic, 500, 585, 10.1038/nature12480

David, 2014, Diet rapidly and reproducibly alters the human gut microbiome., italicNature/italic, 505, 559, 10.1038/nature12820

De Filippo, 2010, Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa., italicProc. Natl. Acad. Sci. U.S.A./italic, 107, 14691, 10.1073/pnas.1005963107

Dethlefsen, 2011, Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation., italicProc. Natl. Acad. Sci. U.S.A./italic, 108, 4554, 10.1073/pnas.1000087107

Duncan, 2013, Probiotics and prebiotics and health in ageing populations., italicMaturitas/italic, 75, 44, 10.1016/j.maturitas.2013.02.004

Duncan, 2008, Human colonic microbiota associated with diet, obesity and weight loss., italicInt. J. Obes./italic, 32, 1720, 10.1038/ijo.2008.155

Eckburg, 2005, Diversity of the human intestinal microbial flora., italicScience/italic, 308, 1635, 10.1126/science.1110591

Faith, 2013, The long-term stability of the human gut microbiota., italicScience/italic, 341, 44, 10.1126/science.1237439

Fallani, 2011, Determinants of the human infant intestinal microbiota after the introduction of first complementary foods in infant samples from five European centres., italicMicrobiology/italic, 157, 1385, 10.1099/mic.0.042143-0

Fallani, 2010, Intestinal microbiota of 6-week-old infants across Europe: geographic influence beyond delivery mode, breast-feeding, and antibiotics., italicJ. Pediatr. Gastroenterol. Nutr./italic, 51, 77, 10.1097/MPG.0b013e3181d1b11e

Guigoz, 2002, Effects of oligosaccharide on the faecal flora and non-specific immune system in elderly people., italicNutr. Res./italic, 22, 13, 10.1016/S0271-5317(01)00354-2

Harmsen, 2000, Analysis of intestinal flora development in breast-fed and formula-fed infants by using molecular identification and detection methods., italicJ. Pediatr. Gastroenterol. Nutr./italic, 30, 61, 10.1097/00005176-200001000-00019

Huse, 2012, A core human microbiome as viewed through 16S rRNA sequence clusters., italicPLoS ONE/italic, 7, 10.1371/journal.pone.0034242

Jost, 2012, New insights in gut microbiota establishment in healthy breast fed neonates., italicPLoS ONE/italic, 7, 10.1371/journal.pone.0044595

Kelly, 2007, Importance of microbial colonization of the gut in early life to the development of immunity., italicMutat. Res./italic, 622, 58, 10.1016/j.mrfmmm.2007.03.011

Knol, 2005, Increase of faecal bifidobacteria due to dietary oligosaccharides induces a reduction of clinically relevant pathogen germs in the faeces of formula-fed preterm infants. italicActa Paediatr./italic, italicSuppl./italic, 94, 31, 10.1080/08035320510043529

Koenig, 2011, Succession of microbial consortia in the developing infant gut microbiome., italicProc. Natl. Acad. Sci. U.S.A./italic, 108(Suppl. 1), 4578, 10.1073/pnas.1000081107

Koren, 2013, A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets., italicPLoS Comput. Biol./italic, 9, 10.1371/journal.pcbi.1002863

Le Chatelier, 2013, Richness of human gut microbiome correlates with metabolic markers., italicNature/italic, 500, 541, 10.1038/nature12506

Ley, 2006, Microbial ecology: human gut microbes associated with obesity., italicNature/italic, 444, 1022, 10.1038/4441022a

Likotrafiti, 2014, An italicin vitro/italic study of the effect of probiotics, prebiotics and synbiotics on the elderly faecal microbiota., italicAnaerobe/italic, 27, 50, 10.1016/j.anaerobe.2014.03.009

Lin, 2013, Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States., italicPLoS ONE/italic, 8, 10.1371/journal.pone.0053838

Ma, 2014, High-fat maternal diet during pregnancy persistently alters the offspring microbiome in a primate model., italicNat. Commun./italic, 5, 10.1038/ncomms4889

Macfarlane, 2014, Antibiotic treatments and microbes in the gut., italicEnviron. Microbiol./italic, 16, 919, 10.1111/1462-2920.12399

Marques, 2010, Programming infant gut microbiota: influence of dietary and environmental factors., italicCurr. Opin. Biotechnol./italic, 21, 149, 10.1016/j.copbio.2010.03.020

Muegge, 2011, Diet drives convergence in gut microbiome functions across italicMammalian/italic phylogeny and within humans., italicScience/italic, 332, 970, 10.1126/science.1198719

O’Connor, 2014, Gut microbiota in older subjects: variation, health consequences and dietary intervention prospects., italicProc. Nutr. Soc./italic, 13, 1, 10.1017/S0029665114000597

Okada, 2010, The “hygiene hypothesis” for autoimmune and allergic diseases: an update., italicClin. Exp. Immunol./italic, 160, 1, 10.1111/j.1365-2249.2010.04139.x

Oozeer, 2013, Intestinal microbiology in early life: specific prebiotics can have similar functionalities as human-milk oligosaccharides., italicAm. J. Clin. Nutr./italic, 98, 561S, 10.3945/ajcn.112.038893

Ou, 2013, Diet, microbiota, and microbial metabolites in colon cancer risk in rural Africans and African Americans., italicAm. J. Clin. Nutr./italic, 98, 111, 10.3945/ajcn.112.056689

Palmer, 2007, Development of the human infant intestinal microbiota., italicPLoS Biol./italic, 5, 10.1371/journal.pbio.0050177

Preidis, 2009, Targeting the human microbiome with antibiotics, probiotics, and prebiotics: gastroenterology enters the metagenomics era., italicGastroenterology/italic, 136, 2015, 10.1053/j.gastro.2009.01.072

Qato, 2008, Use of prescription and over-the-counter medications and dietary supplements among older adults in the united states., italicJ. Am. Med. Assoc./italic, 300, 2867, 10.1001/jama.2008.892

Rajilic-Stojanovic, 2013, Long-term monitoring of the human intestinal microbiota composition., italicEnviron. Microbiol./italic, 15, 1146, 10.1111/1462-2920.12023

Roager, 2014, Microbial enterotypes, inferred by the prevotella-to-bacteroides ratio, remained stable during a 6-month randomized controlled diet intervention with the new nordic diet., italicAppl. Environ. Microbiol./italic, 80, 1142, 10.1128/AEM.03549-13

Rook, 2012, Hygiene hypothesis and autoimmune diseases., italicClin. Rev. Allergy Immunol./italic, 42, 5, 10.1007/s12016-011-8285-8

Schnorr, 2014, Gut microbiome of the Hadza hunter-gatherers., italicNat. Commun./italic, 5, 10.1038/ncomms4654

Sekirov, 2010, Gut microbiota in health and disease., italicPhysiol. Rev./italic, 90, 859, 10.1152/physrev.00045.2009

Siciliano, 2012, Molecular mechanisms of probiotic action: a proteomic perspective., italicCurr. Opin. Microbiol./italic, 15, 390, 10.1016/j.mib.2012.03.006

Subramanian, 2014, Persistent gut microbiota immaturity in malnourished Bangladeshi children., italicNature/italic, 510, 417, 10.1038/nature13421

Tilg, 2011, Gut microbiome, obesity, and metabolic dysfunction., italicJ. Clin. Invest./italic, 121, 2126, 10.1172/JCI58109

Toward, 2012, Effect of prebiotics on the human gut microbiota of elderly persons., italicGut Microbes/italic, 3, 57, 10.4161/gmic.19411

Turroni, 2012, Diversity of bifidobacteria within the infant gut microbiota., italicPLoS ONE/italic, 7, 10.1371/journal.pone.0036957

van de Guchte, 2012, Properties of probiotic bacteria explored by proteomic approaches., italicCurr. Opin. Microbiol./italic, 15, 381, 10.1016/j.mib.2012.04.003

van Tongeren, 2005, Fecal microbiota composition and frailty., italicAppl. Environ. Microbiol./italic, 71, 6438, 10.1128/AEM.71.10.6438-6442.2005

Vulevic, 2008, Modulation of the fecal microflora profile and immune function by a novel trans-galactooligosaccharide mixture (B-GOS) in healthy elderly volunteers., italicAm. J. Clin. Nutr./italic, 88, 1438

Woodmansey, 2007, Intestinal bacteria and ageing., italicJ. Appl. Microbiol./italic, 102, 1178, 10.1111/j.1365-2672.2007.03400.x

Wu, 2011, Linking long-term dietary patterns with gut microbial enterotypes., italicScience/italic, 334, 105, 10.1126/science.1208344

Yatsunenko, 2012, Human gut microbiome viewed across age and geography., italicNature/italic, 486, 222, 10.1038/nature11053