Integrating network pharmacology and non-targeted metabolomics to explore the common mechanism of Coptis Categorized Formula improving T2DM zebrafish
Tài liệu tham khảo
Adhikary, 2004, Abnormal p38 mitogen-activated protein kinase signalling in human and experimental diabetic nephropathy, Diabetologia, 47, 1210, 10.1007/s00125-004-1437-0
Aroor, 2013, Maladaptive immune and inflammatory pathways lead to cardiovascular insulin resistance, Metabolism, 62, 1543, 10.1016/j.metabol.2013.07.001
Barabasi, 2004, Network biology: understanding the cell's functional organization, Nat. Rev. Genet., 5, 101, 10.1038/nrg1272
Barber, 2012, Plasma lysophosphatidylcholine levels are reduced in obesity and type 2 diabetes, PLoS One, 7, 10.1371/journal.pone.0041456
Beretta, 2015, PI3K signaling in the pathogenesis of obesity: the cause and the cure, Adv Biol Regul, 58, 1, 10.1016/j.jbior.2014.11.004
Boodhwani, 2007, Functional, cellular, and molecular characterization of the angiogenic response to chronic myocardial ischemia in diabetes, Circulation, 116, I31
Brash, 2001, Arachidonic acid as a bioactive molecule, J. Clin. Invest., 107, 1339, 10.1172/JCI13210
Burrage, 2014, Branched-chain amino acid metabolism: from rare Mendelian diseases to more common disorders, Hum. Mol. Genet., 23, R1, 10.1093/hmg/ddu123
Ceriello, 2009, Antioxidant anti-inflammatory treatment in type 2 diabetes, Diabetes Care, 32, S232, 10.2337/dc09-S316
Chaurasia, 2016, Adipocyte ceramides regulate subcutaneous adipose browning, inflammation, and metabolism, Cell Metabol., 24, 820, 10.1016/j.cmet.2016.10.002
Chen, 2007, Effect of huanglian jiedu decoction ) on glucose transporter 4 expression in adipose and skeletal muscle tissues of insulin resistant rats, Chin. J. Integr. Med., 13, 41, 10.1007/s11655-007-0041-9
Cheng, 2014, Efficacy and safety of dipeptidyl peptidase-4 inhibitors in type 2 diabetes mellitus patients with moderate to severe renal impairment: a systematic review and meta-analysis, PLoS One, 9, e111543, 10.1371/journal.pone.0111543
Choi, 2015, Evaluation of the pharmacokinetics of the DPP-4 inhibitor gemigliptin when coadministered with rosuvastatin or irbesartan to healthy subjects, Curr. Med. Res. Opin., 31, 229, 10.1185/03007995.2014.980886
D, 2006
Dicker, 2011, DPP-4 inhibitors: impact on glycemic control and cardiovascular risk factors, Diabetes Care, 34, S276, 10.2337/dc11-s229
Eid, 2019, New insights into the mechanisms of diabetic complications: role of lipids and lipid metabolism, Diabetologia, 62, 1539, 10.1007/s00125-019-4959-1
Fecher, 2008, The MAPK pathway in melanoma, Curr. Opin. Oncol., 20, 183, 10.1097/CCO.0b013e3282f5271c
Ferreira, 2018, Scavenging of reactive oxygen and nitrogen species with nanomaterials, Nano Res, 11, 4955, 10.1007/s12274-018-2092-y
Forstermann, 2012, Nitric oxide synthases: regulation and function, Eur. Heart J., 33, 829, 10.1093/eurheartj/ehr304
Frimat, 2017, Kidney, heart and brain: three organs targeted by ageing and glycation, Clin. Sci. (Lond.), 131, 1069, 10.1042/CS20160823
Fukami, 2014, Role of AGEs-RAGE system in cardiovascular disease, Curr. Pharmaceut. Des., 20, 2395, 10.2174/13816128113199990475
Furukawa, 2004, Increased oxidative stress in obesity and its impact on metabolic syndrome, J. Clin. Invest., 114, 1752, 10.1172/JCI21625
Gao, 2018, A meta-analysis of the clinical efficacy of TCM decoctions made from formulas in the liuwei dihuang wan categorized formulas in treating diabetic nephropathy proteinuria, Evid Based Complement Alternat Med, 2018, 2427301, 10.1155/2018/2427301
Gar, 2018, Serum and plasma amino acids as markers of prediabetes, insulin resistance, and incident diabetes, Crit. Rev. Clin. Lab Sci., 55, 21, 10.1080/10408363.2017.1414143
Gareus, 2008, Endothelial cell-specific NF-kappaB inhibition protects mice from atherosclerosis, Cell Metabol., 8, 372, 10.1016/j.cmet.2008.08.016
Giacco, 2010, Oxidative stress and diabetic complications, Circ. Res., 107, 1058, 10.1161/CIRCRESAHA.110.223545
Golden, 2012, Methods for insulin delivery and glucose monitoring in diabetes: summary of a comparative effectiveness review, J. Manag. Care Pharm., 18, S1
Górska, 2005, Concentrations of sphingosine and sphinganine in plasma of patients with Type 2 diabetes, Med. Sci. Mon. Int. Med. J. Exp. Clin. Res.: international medical journal of experimental and clinical research, 11, CR35
Guan, 2014, Compound K protects pancreatic islet cells against apoptosis through inhibition of the AMPK/JNK pathway in type 2 diabetic mice and in MIN6 beta-cells, Life Sci., 107, 42, 10.1016/j.lfs.2014.04.034
He, 2021, Integrating non-targeted metabolomics and toxicology networks to study the mechanism of Esculentoside A-induced hepatotoxicity in rats, J. Biochem. Mol. Toxicol., 35, 1
Hochachka, 2001, Mechanism, origin, and evolution of anoxia tolerance in animals, Comp. Biochem. Physiol. B Biochem. Mol. Biol., 130, 435, 10.1016/S1096-4959(01)00408-0
Hsin, 2013, Combining machine learning systems and multiple docking simulation packages to improve docking prediction reliability for network pharmacology, PLoS One, 8, 10.1371/journal.pone.0083922
Huang, 2018, Coptidis rhizoma-contained traditional formulae for insomnia: a potential to prevent diabetes?, Chin. J. Integr. Med., 24, 785, 10.1007/s11655-018-3012-4
Imai, 2020, Connecting pancreatic islet lipid metabolism with insulin secretion and the development of type 2 diabetes, Ann. N. Y. Acad. Sci., 1461, 53, 10.1111/nyas.14037
Johnson, 2003, Is there a pathogenetic role for uric acid in hypertension and cardiovascular and renal disease?, Hypertension, 41, 1183, 10.1161/01.HYP.0000069700.62727.C5
Kang, 2005, Uric acid-induced C-reactive protein expression: implication on cell proliferation and nitric oxide production of human vascular cells, J. Am. Soc. Nephrol., 16, 3553, 10.1681/ASN.2005050572
Kawanabe, 2016, Effects of unsaturated fatty acids on the kinetics of voltage-gated proton channels heterologously expressed in cultured cells, J. Physiol., 594, 595, 10.1113/JP271274
Krebs, 2002, Mechanism of amino acid-induced skeletal muscle insulin resistance in humans, Diabetes, 51, 599, 10.2337/diabetes.51.3.599
Law, 2019, An updated review of lysophosphatidylcholine metabolism in human diseases, Int. J. Mol. Sci., 20, 10.3390/ijms20051149
Liao, 2015, The impact of Caspase-8 on non-small cell lung cancer brain metastasis in II/III stage patient, Neoplasma, 10.4149/neo_2015_043
Lossi, 2018, Caspase-3 mediated cell death in the normal development of the mammalian cerebellum, Int. J. Mol. Sci., 19, 10.3390/ijms19123999
Lynch, 2014, Branched-chain amino acids in metabolic signalling and insulin resistance, Nat. Rev. Endocrinol., 10, 723, 10.1038/nrendo.2014.171
Maiuolo, 2016, Regulation of uric acid metabolism and excretion, Int. J. Cardiol., 213, 8, 10.1016/j.ijcard.2015.08.109
Matsuoka, 1997, Glycation-dependent, reactive oxygen species-mediated suppression of the insulin gene promoter activity in HIT cells, J. Clin. Invest., 99, 144, 10.1172/JCI119126
Meikle, 2017, Sphingolipids and phospholipids in insulin resistance and related metabolic disorders, Nat. Rev. Endocrinol., 13, 79, 10.1038/nrendo.2016.169
Miller, 2000, Nutrition in paediatric human immunodeficiency virus infection, Proc. Nutr. Soc., 59, 155, 10.1017/S0029665100000185
Ming, 2017, Liquid chromatography mass spectrometry-based profiling of phosphatidylcholine and phosphatidylethanolamine in the plasma and liver of acetaminophen-induced liver injured mice, Lipids Health Dis., 16, 153, 10.1186/s12944-017-0540-4
Muhammed, 2012, Pancreatic beta-cell dysfunction, expression of iNOS and the effect of phosphodiesterase inhibitors in human pancreatic islets of type 2 diabetes, Diabetes Obes. Metabol., 14, 1010, 10.1111/j.1463-1326.2012.01632.x
Niu, 2017, Gold nanoparticles promote osteogenic differentiation of human periodontal ligament stem cells via the p38 MAPK signaling pathway, Mol. Med. Rep., 16, 4879, 10.3892/mmr.2017.7170
Nowotny, 2015, Advanced glycation end products and oxidative stress in type 2 diabetes mellitus, Biomolecules, 5, 194, 10.3390/biom5010194
Pang, 2016, Retrospective study of Traditional Chinese Medicine treatment of type 2 diabetes mellitus, J. Tradit. Chin. Med., 36, 307, 10.1016/S0254-6272(16)30042-5
Pascual, 2015, Mechanisms of crystal formation in gout-a structural approach, Nat. Rev. Rheumatol., 11, 725, 10.1038/nrrheum.2015.125
Radin, 2003, Killing tumours by ceramide-induced apoptosis: a critique of available drugs, Biochem. J., 371, 243, 10.1042/bj20021878
Savolainen, 2017, Biomarkers for predicting type 2 diabetes development-Can metabolomics improve on existing biomarkers?, PLoS One, 12, 10.1371/journal.pone.0177738
Semenza, 1992, A nuclear factor induced by hypoxia via de novo protein synthesis binds to the human erythropoietin gene enhancer at a site required for transcriptional activation, Mol. Cell Biol., 12, 5447
Sidarala, 2017, The regulatory roles of mitogen-activated protein kinase (MAPK) pathways in health and diabetes: lessons learned from the pancreatic beta-cell, Recent Pat. Endocr. Metab. Immune Drug Discov., 10, 76, 10.2174/1872214810666161020154905
Stancakova, 2012, Hyperglycemia and a common variant of GCKR are associated with the levels of eight amino acids in 9,369 Finnish men, Diabetes, 61, 1895, 10.2337/db11-1378
Takeuchi, 2008, Possible involvement of advanced glycation end-products (AGEs) in the pathogenesis of Alzheimer's disease, Curr. Pharmaceut. Des., 14, 973, 10.2174/138161208784139693
Tallima, 2018, Arachidonic acid: physiological roles and potential health benefits - a review, J. Adv. Res., 11, 33, 10.1016/j.jare.2017.11.004
Togliatto, 2017, The future challenge of reactive oxygen species (ROS) in hypertension: from bench to bed side, Int. J. Mol. Sci., 18, 10.3390/ijms18091988
Tousoulis, 2012, The role of nitric oxide on endothelial function, Curr. Vasc. Pharmacol., 10, 4, 10.2174/157016112798829760
Wang, 2011, Metabolite profiles and the risk of developing diabetes, Nat. Med., 17, 448, 10.1038/nm.2307
Wang, 2017, Metabolomics highlights pharmacological bioactivity and biochemical mechanism of traditional Chinese medicine, Chem. Biol. Interact., 273, 133, 10.1016/j.cbi.2017.06.011
Wang, 2020, Composite probiotics alleviate type 2 diabetes by regulating intestinal microbiota and inducing GLP-1 secretion in db/db mice, Biomed. Pharmacother., 125, 109914, 10.1016/j.biopha.2020.109914
Xu, 2015, Structural modulation of gut microbiota during alleviation of type 2 diabetes with a Chinese herbal formula, ISME J., 9, 552, 10.1038/ismej.2014.177
Yu, 2010, Oxidative stress with an activation of the renin–angiotensin system in human vascular endothelial cells as a novel mechanism of uric acid-induced endothelial dysfunction, J. Hypertens., 28, 1234, 10.1097/HJH.0b013e328337da1d
Zhang, 2014, Hypolipidemic effect of the Chinese polyherbal Huanglian Jiedu decoction in type 2 diabetic rats and its possible mechanism, Phytomed. Int. J. Phytother. Phytopharm., 21, 615
