microRNA involvement in developmental and functional aspects of the nervous system and in neurological diseases

Neuroscience Letters - Tập 466 - Trang 55-62 - 2009
Mette Christensen1,2, Gerhard M. Schratt1
1Interdisziplinäres Zentrum für Neurowissenschaften, SFB488 Junior Group, Universität Heidelberg, and Institut für Neuroanatomie, Universitätsklinikum Heidelberg, Im Neuenheimer Feld 345, 69120 Heidelberg, Germany
2Wilhelm Johannsen Center for Functional Genome Research, Department of Cellular and Molecular Medicine, The Panum Institute, University of Copenhagen, Blegdamsvej 3, 2200 Copenhagen N, Denmark

Tài liệu tham khảo

Abelson, 2005, Sequence variants in SLITRK1 are associated with Tourette's syndrome, Science, 310, 317, 10.1126/science.1116502 Antar, 2005, Localization of FMRP-associated mRNA granules and requirement of microtubules for activity-dependent trafficking in hippocampal neurons, Genes Brain Behav., 4, 350, 10.1111/j.1601-183X.2005.00128.x Ashraf, 2006, Synaptic protein synthesis associated with memory is regulated by the RISC pathway in Drosophila, Cell, 124, 191, 10.1016/j.cell.2005.12.017 Bailey, 2004, The persistence of long-term memory: a molecular approach to self-sustaining changes in learning-induced synaptic growth, Neuron, 44, 49, 10.1016/j.neuron.2004.09.017 Barik, 2008, An intronic microRNA silences genes that are functionally antagonistic to its host gene, Nucleic Acids Res., 36, 5232, 10.1093/nar/gkn513 Bartel, 2004, microRNAs: genomics, biogenesis, mechanism, and function, Cell, 116, 281, 10.1016/S0092-8674(04)00045-5 Bhattacharyya, 2006, Relief of microRNA-mediated translational repression in human cells subjected to stress, Cell, 125, 1111, 10.1016/j.cell.2006.04.031 Borchert, 2006, RNA polymerase III transcribes human microRNAs, Nat. Struct. Mol. Biol., 13, 1097, 10.1038/nsmb1167 Bushati, 2007, microRNA functions, Annu. Rev. Cell Dev. Biol., 23, 175, 10.1146/annurev.cellbio.23.090506.123406 Bussing, 2008, let-7 microRNAs in development, stem cells and cancer, Trends Mol. Med., 14, 400, 10.1016/j.molmed.2008.07.001 Cao, 2007, A functional study of miR-124 in the developing neural tube, Genes Dev., 21, 531, 10.1101/gad.1519207 Caudy, 2002, Fragile X-related protein and VIG associate with the RNA interference machinery, Genes Dev., 16, 2491, 10.1101/gad.1025202 Cheng, 2007, microRNA modulation of circadian-clock period and entrainment, Neuron, 54, 813, 10.1016/j.neuron.2007.05.017 Choi, 2008, Members of the miRNA-200 family regulate olfactory neurogenesis, Neuron, 57, 41, 10.1016/j.neuron.2007.11.018 Cullen, 2004, Transcription and processing of human microRNA precursors, Mol. Cell, 16, 861, 10.1016/j.molcel.2004.12.002 Davis, 2008, Conditional loss of Dicer disrupts cellular and tissue morphogenesis in the cortex and hippocampus, J. Neurosci., 28, 4322, 10.1523/JNEUROSCI.4815-07.2008 De Pietri Tonelli, 2008, miRNAs are essential for survival and differentiation of newborn neurons but not for expansion of neural progenitors during early neurogenesis in the mouse embryonic neocortex, Development, 135, 3911, 10.1242/dev.025080 Dostie, 2003, Numerous microRNPs in neuronal cells containing novel microRNAs, RNA, 9, 180, 10.1261/rna.2141503 Feng, 1997, Fragile X mental retardation protein: nucleocytoplasmic shuttling and association with somatodendritic ribosomes, J. Neurosci., 17, 1539, 10.1523/JNEUROSCI.17-05-01539.1997 Fiore, 2009, Mef2-mediated transcription of the miR379-410 cluster regulates activity-dependent dendritogenesis by fine-tuning Pumilio2 protein levels, EMBO J., 28, 697, 10.1038/emboj.2009.10 Flavell, 2008, Signaling mechanisms linking neuronal activity to gene expression and plasticity of the nervous system, Annu. Rev. Neurosci., 31, 563, 10.1146/annurev.neuro.31.060407.125631 Giraldez, 2005, microRNAs regulate brain morphogenesis in zebrafish, Science, 308, 833, 10.1126/science.1109020 S. Griffiths-Jones, The microRNA Registry, Nucleic Acids Res. 32 (Database issue) (2004) D109–D111. Hebert, 2008, microRNA regulation of Alzheimer's amyloid precursor protein expression, Neurobiol. Dis., 33, 422, 10.1016/j.nbd.2008.11.009 Hebert, 2008, Loss of microRNA cluster miR-29a/b-1 in sporadic Alzheimer's disease correlates with increased BACE1/beta-secretase expression, Proc. Natl. Acad. Sci. U.S.A., 105, 6415, 10.1073/pnas.0710263105 Heo, 2008, Lin28 mediates the terminal uridylation of let-7 precursor microRNA, Mol. Cell, 32, 276, 10.1016/j.molcel.2008.09.014 Jin, 2004, Biochemical and genetic interaction between the fragile X mental retardation protein and the microRNA pathway, Nat. Neurosci., 7, 113, 10.1038/nn1174 Karres, 2007, The conserved microRNA miR-8 tunes atrophin levels to prevent neurodegeneration in Drosophila, Cell, 131, 136, 10.1016/j.cell.2007.09.020 Kim, 2007, A microRNA feedback circuit in midbrain dopamine neurons, Science, 317, 1220, 10.1126/science.1140481 Klein, 2007, Homeostatic regulation of MeCP2 expression by a CREB-induced microRNA, Nat. Neurosci., 10, 1513, 10.1038/nn2010 Kloosterman, 2006, The diverse functions of microRNAs in animal development and disease, Dev. Cell, 11, 441, 10.1016/j.devcel.2006.09.009 Kocerha, 2009, microRNA-219 modulates NMDA receptor-mediated neurobehavioral dysfunction, Proc. Natl. Acad. Sci. U.S.A., 106, 3507, 10.1073/pnas.0805854106 Krek, 2005, Combinatorial microRNA target predictions, Nat. Genet., 37, 495, 10.1038/ng1536 Krichevsky, 2003, A microRNA array reveals extensive regulation of microRNAs during brain development, RNA, 9, 1274, 10.1261/rna.5980303 Krichevsky, 2006, Specific microRNAs modulate embryonic stem cell-derived neurogenesis, Stem Cells, 24, 857, 10.1634/stemcells.2005-0441 Lagos-Quintana, 2002, Identification of tissue-specific microRNAs from mouse, Curr. Biol., 12, 735, 10.1016/S0960-9822(02)00809-6 Leucht, 2008, microRNA-9 directs late organizer activity of the midbrain-hindbrain boundary, Nat. Neurosci., 11, 641, 10.1038/nn.2115 Lewis, 2005, Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets, Cell, 120, 15, 10.1016/j.cell.2004.12.035 Li, 2008, The microRNA pathway and fragile X mental retardation protein, Biochim. Biophys. Acta, 1779, 702, 10.1016/j.bbagrm.2008.07.003 Li, 2001, The fragile X mental retardation protein inhibits translation via interacting with mRNA, Nucleic Acids Res., 29, 2276, 10.1093/nar/29.11.2276 Lim, 2005, Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs, Nature, 433, 769, 10.1038/nature03315 Lugli, 2005, Dicer and eIF2c are enriched at postsynaptic densities in adult mouse brain and are modified by neuronal activity in a calpain-dependent manner, J. Neurochem., 94, 896, 10.1111/j.1471-4159.2005.03224.x Lugli, 2008, Expression of microRNAs and their precursors in synaptic fractions of adult mouse forebrain, J. Neurochem., 106, 650, 10.1111/j.1471-4159.2008.05413.x Makeyev, 2007, The microRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing, Mol. Cell, 27, 435, 10.1016/j.molcel.2007.07.015 Maller Schulman, 2008, The let-7 microRNA target gene, Mlin41/Trim71 is required for mouse embryonic survival and neural tube closure, Cell Cycle, 7, 3935, 10.4161/cc.7.24.7397 Miska, 2004, Microarray analysis of microRNA expression in the developing mammalian brain, Genome Biol., 5, R68, 10.1186/gb-2004-5-9-r68 Newman, 2008, Lin-28 interaction with the Let-7 precursor loop mediates regulated microRNA processing, RNA, 14, 1539, 10.1261/rna.1155108 Nimchinsky, 2001, Abnormal development of dendritic spines in FMR1 knock-out mice, J. Neurosci., 21, 5139, 10.1523/JNEUROSCI.21-14-05139.2001 Okamura, 2004, Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways, Genes Dev., 18, 1655, 10.1101/gad.1210204 Packer, 2008, The bifunctional microRNA miR-9/miR-9* regulates REST and CoREST and is downregulated in Huntington's disease, J. Neurosci., 28, 14341, 10.1523/JNEUROSCI.2390-08.2008 Pillai, 2007, Repression of protein synthesis by miRNAs: how many mechanisms?, Trends Cell Biol., 17, 118, 10.1016/j.tcb.2006.12.007 Roush, 2008, The let-7 family of microRNAs, Trends Cell Biol., 18, 505, 10.1016/j.tcb.2008.07.007 Rybak, 2008, A feedback loop comprising lin-28 and let-7 controls pre-let-7 maturation during neural stem-cell commitment, Nat. Cell Biol., 10, 987, 10.1038/ncb1759 Schaefer, 2007, Cerebellar neurodegeneration in the absence of microRNAs, J. Exp. Med., 204, 1553, 10.1084/jem.20070823 Schratt, 2006, A brain-specific microRNA regulates dendritic spine development, Nature, 439, 283, 10.1038/nature04367 Shibata, 2008, microRNA-9 modulates Cajal-Retzius cell differentiation by suppressing Foxg1 expression in mouse medial pallium, J. Neurosci., 28, 10415, 10.1523/JNEUROSCI.3219-08.2008 G. Siegel, G. Obernosterer, R. Fiore, M. Oehmen, S. Bicker, M. Christensen, S. Khudayberdiev, P.F. Leuschner, C.J.L. Busch, C. Kane, K. Hübel, F. Dekker, C. Hedberg, B. Rengarajan, C. Drepper, H. Waldmann, S. Kauppinen, M.E. Greenberg, A. Draguhn, M. Rehmsmeier, J. Martinez, G.M. Schratt, A functional screen implicates microRNA-138-dependent regulation of the depalmitoylation enzyme APT1 in dendritic spine morphogenesis, Nat. Cell Biol., in press. Slack, 2000, The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor, Mol. Cell, 5, 659, 10.1016/S1097-2765(00)80245-2 Smirnova, 2005, Regulation of miRNA expression during neural cell specification, Eur. J. Neurosci., 21, 1469, 10.1111/j.1460-9568.2005.03978.x Stark, 2008, Altered brain microRNA biogenesis contributes to phenotypic deficits in a 22q11-deletion mouse model, Nat. Genet., 40, 751, 10.1038/ng.138 Sutton, 2006, Dendritic protein synthesis, synaptic plasticity, and memory, Cell, 127, 49, 10.1016/j.cell.2006.09.014 Vassar, 1999, Beta-secretase cleavage of Alzheimer's amyloid precursor protein by the transmembrane aspartic protease BACE, Science, 286, 735, 10.1126/science.286.5440.735 Vella, 2004, The C. elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3′UTR, Genes Dev., 18, 132, 10.1101/gad.1165404 Visvanathan, 2007, The microRNA miR-124 antagonizes the anti-neural REST/SCP1 pathway during embryonic CNS development, Genes Dev., 21, 744, 10.1101/gad.1519107 Viswanathan, 2008, Selective blockade of microRNA processing by Lin28, Science, 320, 97, 10.1126/science.1154040 Vo, 2005, A cAMP-response element binding protein-induced microRNA regulates neuronal morphogenesis, Proc. Natl. Acad. Sci. U.S.A., 102, 16426, 10.1073/pnas.0508448102 Wang, 2008, Variation in the miRNA-433 binding site of FGF20 confers risk for Parkinson disease by overexpression of alpha-synuclein, Am. J. Hum. Genet., 82, 283, 10.1016/j.ajhg.2007.09.021 Wang, 2008, The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of beta-site amyloid precursor protein-cleaving enzyme 1, J. Neurosci., 28, 1213, 10.1523/JNEUROSCI.5065-07.2008 Wayman, 2008, An activity-regulated microRNA controls dendritic plasticity by down-regulating p250GAP, Proc. Natl. Acad. Sci. U.S.A., 105, 9093, 10.1073/pnas.0803072105 Weiler, 2004, Fragile X mental retardation protein is necessary for neurotransmitter-activated protein translation at synapses, Proc. Natl. Acad. Sci. U.S.A., 101, 17504, 10.1073/pnas.0407533101 Wienholds, 2005, microRNA expression in zebrafish embryonic development, Science, 309, 310, 10.1126/science.1114519 Wu, 2005, Micro-RNA regulation of the mammalian lin-28 gene during neuronal differentiation of embryonal carcinoma cells, Mol. Cell Biol., 25, 9198, 10.1128/MCB.25.21.9198-9208.2005 Wulczyn, 2007, Post-transcriptional regulation of the let-7 microRNA during neural cell specification, FASEB J., 21, 415, 10.1096/fj.06-6130com Xu, 2008, The steady-state level of the nervous-system-specific microRNA-124a is regulated by dFMR1 in Drosophila, J. Neurosci., 28, 11883, 10.1523/JNEUROSCI.4114-08.2008 Yu, 2007, Induced pluripotent stem cell lines derived from human somatic cells, Science, 318, 1917, 10.1126/science.1151526 Yu, 2008, microRNA miR-124 regulates neurite outgrowth during neuronal differentiation, Exp. Cell Res., 314, 2618, 10.1016/j.yexcr.2008.06.002 Zhao, 2007, A developmental view of microRNA function, Trends Biochem. Sci., 32, 189, 10.1016/j.tibs.2007.02.006