Analysis of QTLs for yield-related traits in Yuanjiang common wild rice (Oryza rufipogon Griff.)

Journal of Genetics and Genomics - Tập 37 - Trang 147-157 - 2010
Qiang Fu1,2, Peijiang Zhang2, Lubin Tan1, Zuofeng Zhu1, Dan Ma1, Yongcai Fu1, Xinchun Zhan2, Hongwei Cai1, Chuanqing Sun1
1State Key Laboratory of Plant Physiology and Biochemistry, National Center for Evaluation of Agricultural Wild Plants (Rice), Laboratory of Crop Heterosis and Utilization of Ministry of Education, Beijing Key Laboratory of Crop Genetic Improvement, Key Laboratory of Crop Genetic Improvement and Genome of Ministry of Agriculture, Department of Plant Genetics and Breeding, China Agricultural University, Beijing 100193, China
2Institute of Rice Research, Anhui Academy of Agricultural Sciences, Hefei 230031, China

Tài liệu tham khảo

Akagi, 1996, Microsatellite DNA markers for rice chromosomes, Theor. Appl. Genet., 93, 1071, 10.1007/BF00230127 Brar, 1997, Alien introgression in rice, Plant Mol. Biol., 35, 35, 10.1023/A:1005825519998 Brondani, 2002, QTL mapping and introgression of yield-related traits from Oryza glumaepatula to cultivated rice (Oryza sativa) using microsatellite markers, Theor. Appl. Genet., 104, 1192, 10.1007/s00122-002-0869-5 Cai, 2002, QTL clusters reflect character associations in wild and cultivated rice, Theor. Appl. Genet., 104, 1217, 10.1007/s00122-001-0819-7 Chen, 1997, Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.), Theor. Appl. Genet., 95, 553, 10.1007/s001220050596 Cho, 1994, The semi-dwarf gene, sd-1, of rice (Oryza sativa L.). II. Molecular mapping and marker-assisted selection, Theor. Appl. Genet., 89, 54, 10.1007/BF00226982 Deng, 2007, Yield-increasing effect of yield-enhancing QTLs from O. rufipogon transferred to 9311, a male parent of medium super hybrid rice, Hybrid Rice, 22, 49 Deng, 2004, Studies on yield-enhancing genes from wild rice and their marker-assisted selection in hybrid rice, Hybrid Rice., 19, 6 Garcia-Oliveira, 2009, Genetic identification of quantitative trait loci for contents of mineral nutrients in rice grain, J. Integr. Plant. Biol., 51, 84, 10.1111/j.1744-7909.2008.00730.x Hao, 2006, Construction of chromosome segment substitution lines carrying overlapping chromosome segments of the whole wild rice genome and identification of quantitative trait loci for rice quality, J. Plant. Physiol. Mol. Biol., 32, 354 Harlan, 1976, Genetic resources in wild relatives of crops, Crop Sci., 16, 329, 10.2135/cropsci1976.0011183X001600030004x He, 2006, Haplotype variation in structure and expression of a gene cluster associated with a quantitative trait locus for improved yield in rice, Genome Res., 16, 618, 10.1101/gr.4814006 Hittalmani, 2003, Identification of QTL for growth- and grain yield-related traits in rice across nine locations of Asia, Theor. Appl. Genet., 107, 679, 10.1007/s00122-003-1269-1 Khush, 1991, A new gene for resistance to bacterial blight form O. longistaminata, Rice Genet. Newslett., 7, 121 Khush, G.S., Ling, K.C., Aquino, R.C., and Aquiero, V.M. (1977). Breeding for resistance to grassy stunt in rice. In Proc. 3rd Intern. Congr. SABRAO, Canberra, Australia. Plant Breeding Papers 1[4], pp. 3–9. Li, 2006, Gentetic analysis of rice domestication syndrome with the wild annual species, Oryza nivara, New Phytol., 170, 185, 10.1111/j.1469-8137.2005.01647.x Li, 2002, Identification and mapping of genes for improving yield from Chinese common wild rice (O. rufipogon Griff.) using advanced backcross QTL analysis, Chin. Sci. Bull., 18, 1533, 10.1360/02tb9337 Lin, S.C., and Yuan, L.P. (1980). Hybrid rice breeding in China, pp. 35–51. In International Rice Research Conference (1979, Los Baños, Laguna, Philippines). Innovative approaches to rice breeding: Selected papers. Manly, 2001, Map Manager QTX, cross-platform software for genetic mapping, Mamm. Genome, 12, 930, 10.1007/s00335-001-1016-3 Marri, 2005, Identification and mapping of yield and yield related QTLs from an Indian accession of Oryza rufipogon, BMC Genetics, 6, 33, 10.1186/1471-2156-6-33 McCouch, 2002, Development of 2,240 new SSR markers for rice (Oryza sativa L.), DNA Res., 9, 199, 10.1093/dnares/9.6.199 Moncada, 2001, Quantitative trait loci for yield and yield components in an Oryza sativa × Oryza rufipogon BC2F2 population evaluated in an upland environment, Theor. Appl. Genet., 102, 41, 10.1007/s001220051616 Oka, 1988, Origin of Cultivated Rice Panaud, 1996, Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.), Mol. Gen. Gent., 252, 597 Pang, 1995, Morphological classification of common wild rice (Oryza rufipogon Griff.) in China, Acta Agronomica Sinica, 21, 17 Ragot, 1995, Molecular-marker-mediated characterization of favorable exotic alleles at quantitative trait loci in maize, Crop Sci., 35, 1306, 10.2135/cropsci1995.0011183X003500050009x Rogers, 1988, Extraction of DNA from plant tissue, 1 Second, 1982, Origin of the genetic diversity of cultivated rice (Oryza spp.), study of the polymorphism scored at 40 isozyme loci, Jpn. J. Genet., 57, 25, 10.1266/jjg.57.25 Septiningsih, 2003, Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon, Theor. Appl. Genet., 107, 1419, 10.1007/s00122-003-1373-2 Septiningsih, 2003, Identification of quantitative trait loci for grain quality in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon, Theor. Appl. Genet., 107, 1433, 10.1007/s00122-003-1376-z Song, 1995, The rice disease resistance gene, Xa-21, encodes a receptor Kinase-like protein, Science, 270, 1084, 10.1126/science.270.5243.1804 Sun, 2002, Genetic differentiation for nuclear, mitochondrial and chloroplast genomes in common wild rice (O. rufipogon Griff.) and cultivated rice (O. sativa L.), Theor. Appl. Genet., 104, 1335, 10.1007/s00122-002-0878-4 Sun, 2001, Comparison of the genetic diversity of common wild rice (Oryza rufipogon Griff.) and cultivated rice (O. sativa L.) using RFLP markers, Theor. Appl. Genet., 102, 157, 10.1007/s001220051631 Tan, 2007, Development of Oryza rufipogon and O. sativa introgression lines and assessment for yield-related quantitative trait loci, J. Integr. Plant Biol., 49, 871, 10.1111/j.1744-7909.2007.00497.x Tan, 2008, Quantitative trait loci underlying domestication and yield-related traits in Oryza rufipogon × Oryza sativa advanced backcross population, Genome, 51, 692, 10.1139/G08-054 Tanksley, 1997, Seed banks and molecular maps: unlocking genetic potential from the wild, Science, 277, 1063, 10.1126/science.277.5329.1063 Tanksley, 1996, Advanced backcross QTL analysis: a method for the simultaneous discovery and transfer of valuable QTLs from unadapted germplasm into elite breeding lines, Theor. Appl. Genet., 92, 191, 10.1007/BF00223376 Temnykh, 2000, Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.), Theor. Appl. Genet., 100, 697, 10.1007/s001220051342 Thomson, 2003, Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson, Theor. Appl. Genet., 107, 479, 10.1007/s00122-003-1270-8 Tian, 2006, Construction of introgression lines carrying wild rice (Oryza rufipogon Griff.) segments in cultivated rice (O. sativa L.) background and characterization of introgressed segments associated with yield-related traits, Theor. Appl. Genet., 112, 570, 10.1007/s00122-005-0165-2 Tian, 2006, Fine mapping of a quantitative trait locus for grain number per panicle from wild rice (Oryza rufipogon Griff.), Theor. Appl. Genet., 113, 619, 10.1007/s00122-006-0326-y Vaughan, 1994, 137 Wang, 1992, Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs, Theor. Appl. Genet., 83, 565, 10.1007/BF00226900 Xiao, 1998, Identification of trait-improving quantitative trait loci alleles from a wild rice relative, Oryza rufipogon, Genetics, 150, 899, 10.1093/genetics/150.2.899 Xiao, 1996, Identification of QTLs affecting traits of agronomic importance in a recombinant inbred population derived from a subspecific cross, Theor. Appl. Genet., 92, 230, 10.1007/BF00223380 Zamir, 2001, Improving plant breeding with exotic genetic libraries, Nat. Rev. Genet., 2, 983, 10.1038/35103589 Zhang, 2000, Identifying and mapping a new gene Xa-23(t) for resistance to bacterial blight (Xanthomonas oryzae pv. oryzae) from O. rufipogon, Acta Agronomica Sinica, 26, 536