Relative impacts of land-use, management intensity and fertilization upon soil microbial community structure in agricultural systems

Acosta-Martínez, 2006, Soil microbial communities and enzyme activities under various poultry litter application rates, Journal of Environmental Quality, 35, 1309, 10.2134/jeq2005.0470

Adl, 2006, Slow recovery of soil biodiversity in sandy loam soils of Georgia after 25 years of no-tillage management, Agriculture, Ecosystems & Environment, 114, 323, 10.1016/j.agee.2005.11.019

Anderson, 1994, Functional attributes of biodiversity in land use systems, 267

Ashelford, 2005, At least one in twenty 16S rRNA sequence records currently held in public repositories estimated to contain substantial anomalies, Applied and Environmental Microbiology, 71, 7724, 10.1128/AEM.71.12.7724-7736.2005

Ashelford, 2006, New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras, Applied and Environmental Microbiology, 72, 5734, 10.1128/AEM.00556-06

Bossio, 1998, Impacts of carbon and flooding on soil microbial communities: phospholipid fatty acid profiles and substrate utilization patterns, Microbial Ecology, 35, 265, 10.1007/s002489900082

Bossio, 1998, Determinants of soil microbial communities: effects of agricultural management, season, and soil type on phospholipid fatty acid profiles, Microbial Ecology, 36, 1, 10.1007/s002489900087

Bruce, 1983, Physical characterization of soils in the southern region: Cecil, No. 267

Buckley, 2001, The structure of microbial communities in soil and the lasting impact of cultivation, Microbial Ecology, 42, 11, 10.1007/s002480000108

Bundy, 1994, Nitrogen availability indices, 951

Butler, 2003, Microbial community dynamics associated with rhizosphere C flow, Applied and Environmental Microbiology, 69, 6793, 10.1128/AEM.69.11.6793-6800.2003

Carney, 2006, The influence of tropical plant diversity and composition on soil microbial communities, Microbial Ecology, 52, 226, 10.1007/s00248-006-9115-z

Chao, 1984, Estimating the population size for capture-recapture data with unequal catchability, Biometrics, 43, 783, 10.2307/2531532

Cotta, 2003, Isolation, characterization and comparison of bacteria from swine faeces and manure storage pits, Environmental Microbiology, 5, 737, 10.1046/j.1467-2920.2003.00467.x

DeSantis, 2006, NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes, Nucleic Acids Research, 34, W394, 10.1093/nar/gkl244

DeSantis, 2006, Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB, Applied and Environmental Microbiology, 72, 5069, 10.1128/AEM.03006-05

Edwards, 2000, Runoff nutrient and fecal coliform content from cattle manure application to fescue plots, Journal of the American Water Resources Association, 36, 711, 10.1111/j.1752-1688.2000.tb04300.x

Elrashidi, 2003, Assessment of Mehlich3 and ammonium bicarbonate-DTPA extraction for simultaneous measurement of fifteen elements in soils, Communications in Soil Science and Plant Analysis, 34, 2817, 10.1081/CSS-120025208

Endale, 2002, Impact of conservation tillage and nutrient management on soil water and yield of cotton fertilized with poultry litter or ammonium nitrate in the Georgia Piedmont, Soil & Tillage Research, 66, 55, 10.1016/S0167-1987(02)00013-2

Enwall, 2007, Long-term impact of fertilization on activity and composition of bacterial communities and metabolic guilds in agricultural soil, Soil Biology & Biochemistry, 39, 106, 10.1016/j.soilbio.2006.06.015

Felsenstein, 2004

Fierer, 2007, Toward an ecological classification of soil bacteria, Ecology, 88, 1354, 10.1890/05-1839

Fierer, 2006, The diversity and biogeography of soil bacterial communities, Proceedings of the National Academy of Science USA, 103, 626, 10.1073/pnas.0507535103

Franzluebbers, 1996, Determination of microbial biomass and nitrogen mineralization following rewetting of dried soil, Soil Science Society of America Journal, 60, 1133, 10.2136/sssaj1996.03615995006000040025x

Franzluebbers, 1999, Soil carbon, nitrogen and aggregation in response to type and frequency of tillage, Soil Science Society of America Journal, 63, 349, 10.2136/sssaj1999.03615995006300020012x

Franzluebbers, 2000, Soil organic C and N pools under long-term pasture management in the Southern Piedmont USA, Soil Biology & Biochemistry, 32, 469, 10.1016/S0038-0717(99)00176-5

Franzluebbers, 2001, Bermudagrass management in the Southern Piedmont USA: I. Soil and surface residue carbon and sulfur, Soil Science Society of America Journal, 65, 834, 10.2136/sssaj2001.653834x

Franzluebbers, 2004, Bermudagrass management in the Southern Piedmont, USA: IX. Trace elements in soil with broiler litter application, Journal of Environmental Quality, 33, 778, 10.2134/jeq2004.0778

Fuhrman, 1998, Microbial microdiversity, Nature, 393, 410, 10.1038/30839

Gans, 2005, Computational improvements reveal great bacterial diversity and high metal toxicity in soil, Science, 309, 1387, 10.1126/science.1112665

Ge, 2008, Long-term fertilization regimes affect bacterial community structure and diversity of an agricultural soil in northern China, Journal of Soils and Sediments, 8, 43, 10.1065/jss2008.01.270

Gee, 1979, Particle size analysis by hydrometer: a simplified method for routine textural analysis and a sensitivity test of measured parameters, Soil Science Society of America Journal, 43, 1004, 10.2136/sssaj1979.03615995004300050038x

Gill, 1977, Lipid accumulation in an oleaginous yeast (Candida 107) growing on glucose in single-state continuous culture, Applied and Environmental Microbiology, 33, 231, 10.1128/AEM.33.2.231-239.1977

Griffiths, 2003, Influence of depth and sampling time on bacterial community structure in an upland grassland soil, FEMS Microbiology Ecology, 43, 35, 10.1111/j.1574-6941.2003.tb01043.x

Grime, 1973, Competitive exclusion in herbaceous vegetation, Nature, 242, 344, 10.1038/242344a0

Hedlund, 2002, Soil microbial community structure in relation to vegetation managements on former agricultural land, Soil Biology & Biochemistry, 34, 1299, 10.1016/S0038-0717(02)00073-1

Killham, 1994

Lu, 2003, Evaluation of broiler litter with reference to the microbial composition as assessed by using 16S rRNA and functional gene markers, Applied and Environmental Microbiology, 69, 901, 10.1128/AEM.69.2.901-908.2003

Manaia, 2003, Caenibacterium thermophilum gen. nov., sp. nov., isolated from a thermophilic aerobic digester of municipal sludge, International Journal of Systematic and Evolutionary Microbiology, 53, 1375, 10.1099/ijs.0.02622-0

Mills, 2006, The effects of land use intensification on soil biodiversity in the pasture, Canadian Journal of Plant Science, 86, 1339, 10.4141/P06-114

Moore, 1998, Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes, Nature, 393, 464, 10.1038/30965

Øvreås, 1998, Microbial diversity and community structure in two different agricultural soil communities, Microbial Ecology, 36, 303, 10.1007/s002489900117

Ruppel, 2007, Nitrogen availability decreases prokaryotic diversity in sandy soils, Biology and Fertility of Soils, 43, 449, 10.1007/s00374-006-0122-5

Sait, 2006, Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil, Applied and Environmental Microbiology, 72, 1852, 10.1128/AEM.72.3.1852-1857.2006

Schloss, 2005, Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness, Applied and Environmental Microbiology, 71, 1501, 10.1128/AEM.71.3.1501-1506.2005

Schwarz, 1978, Estimating the dimension of a model, Annals of Statistics, 6, 461, 10.1214/aos/1176344136

Shannon, 1963

Sharpley, 2003, Soil mixing to decrease surface stratification of phosphorus in manured soils, Journal of Environmental Quality, 32, 1375, 10.2134/jeq2003.1375

Singleton, 2001, Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples, Applied and Environmental Microbiology, 67, 4374, 10.1128/AEM.67.9.4374-4376.2001

Sinton, 2007, Survival of indicator and pathogenic bacteria in bovine feces on pasture, Applied and Environmental Microbiology, 73, 7917, 10.1128/AEM.01620-07

Soupir, 2006, Transport of fecal bacteria from poultry litter and cattle manure applied to pastureland, Water, Air, and Soil Pollution, 169, 125, 10.1007/s11270-006-1808-x

Swings, 1980, Frateuria, a new genus for Acetobacter aurantius, International Journal of Systematic Bacteriology, 30, 547, 10.1099/00207713-30-3-547

Troels-Smith, 1984, Stall-feeding and field manuring in Switzerland about 6000 years ago, Tools Tillage, 5, 13

Upchurch, 2008, Differences in the composition and diversity of bacterial communities from agricultural and forest soils, Soil Biology & Biochemistry, 40, 1294, 10.1016/j.soilbio.2007.06.027

Wardle, 1997, Biodiversity and plant litter: experimental evidence which does not support the view that enhanced species richness improves ecosystem function, Oikos, 79, 247, 10.2307/3546010

White, 1996, Quantitative comparisons of in situ microbial biodiversity by signature biomarker analysis, Journal of Industrial Microbiology & Biotechnology, 17, 185, 10.1007/BF01574692

Williams, 2006, Carbon flow from 13C labeled straw and root residues into phospholipids fatty acids of a soil microbial community under field conditions, Soil Biology & Biochemistry, 38, 759, 10.1016/j.soilbio.2005.07.001

Wu, 2008, Comparison of soil bacterial communities under diverse agricultural land management and crop production practices, Microbial Ecology, 55, 293, 10.1007/s00248-007-9276-4