Explosive HIV-1 subtype B' epidemics in Asia driven by geographic and risk group founder events

Virology - Tập 402 - Trang 223-227 - 2010
Yue Li1,2, Rie Uenishi1, Saiki Hase1, Huanan Liao1, Xiao-Jie Li1,3, Takayo Tsuchiura1, Kok Keng Tee1,4, Oliver G. Pybus5, Yutaka Takebe1
1Laboratory of Molecular Virology and Epidemiology, AIDS Research Center, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan
2The State Key Laboratory of Virology, Wuhan Institute of Virology, Chinese Academy of Sciences, Xiaohongshan 44, Wuhan, China
3Department of Dermatology, The First People's Hospital, Shanghai Jiao Tong University, 85 Wujin Road, Shanghai, 200080, China
4Center of Excellence for Research in AIDS (CERiA), University of Malaya, 50603 Kuala Lumpur, Malaysia
5Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK

Tài liệu tham khảo

Deng, 2008, The epidemic origin and molecular properties of B': a founder strain of the HIV-1 transmission in Asia, AIDS, 22, 1851, 10.1097/QAD.0b013e32830f4c62 Drummond, 2007, BEAST: Bayesian evolutionary analysis by sampling trees, BMC Evol. Biol., 7, 214, 10.1186/1471-2148-7-214 Drummond, 2002, Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data, Genetics, 161, 1307, 10.1093/genetics/161.3.1307 Drummond, 2006, Relaxed phylogenetics and dating with confidence, PLoS Biol., 4, e88, 10.1371/journal.pbio.0040088 Gilbert, 2007, The emergence of HIV/AIDS in the Americas and beyond, Proc. Natl. Acad. Sci. U. S. A., 104, 18566, 10.1073/pnas.0705329104 Hasegawa, 1985, Dating of the human-ape splitting by a molecular clock of mitochondrial DNA, J. Mol. Evol., 22, 160, 10.1007/BF02101694 Kalish, 1995, The evolving molecular epidemiology of HIV-1 envelope subtypes in injecting drug users in Bangkok, Thailand: implications for HIV vaccine trials, AIDS, 9, 851, 10.1097/00002030-199508000-00004 Kijak, 2007, Distinguishing molecular forms of HIV-1 in Asia with a high-throughput, fluorescent genotyping assay, MHAbce v.2, Virology, 358, 178, 10.1016/j.virol.2006.07.055 Korber, 2000, Timing the ancestor of the HIV-1 pandemic strains, Science, 288, 1789, 10.1126/science.288.5472.1789 Kusagawa, 1998, Genetic and serologic characterization of HIV type 1 prevailing in Myanmar (Burma), AIDS Res. Hum. Retroviruses, 14, 1379, 10.1089/aid.1998.14.1379 Lemey, 2006, HIV evolutionary dynamics within and among hosts, AIDS Rev., 8, 125 Li, Y., Tee, K.K., Liao, H., Hase, S., Uenishi, R., Li, X.-J., Tsuchiura, T., Yang, R., Govindasamy, S., Yong, Y.K., Tan, H.Y., Pybus, O.G., Kamarulzaman, A., Takebe, Y. (2010). Identification of a novel second-generation circulating recombinant form (CRF48_01B) in Malaysia: A descendant of the previously identified CRF33_01B. J Acquir Immune Defic Syndr in press. Liao, 2009, Phylodynamic analysis of the dissemination of HIV-1 CRF01_AE in Vietnam, Virology, 391, 51, 10.1016/j.virol.2009.05.023 Mastro, 2006, The legacy of unhygienic plasma collection in China, AIDS, 20, 1451, 10.1097/01.aids.0000233580.56844.c1 Motomura, 2003, Different subtype distributions in two cities in Myanmar: evidence for independent clusters of HIV-1 transmission, AIDS, 17, 633, 10.1097/00002030-200303070-00023 Ou, 1993, Independent introduction of two major HIV-1 genotypes into distinct high-risk populations in Thailand, Lancet, 341, 1171, 10.1016/0140-6736(93)91001-3 Piyasirisilp, 2000, A recent outbreak of human immunodeficiency virus type 1 infection in southern China was initiated by two highly homogeneous, geographically separated strains, circulating recombinant form AE and a novel BC recombinant, J. Virol., 74, 11286, 10.1128/JVI.74.23.11286-11295.2000 Pybus, 2003, The epidemiology and iatrogenic transmission of hepatitis C virus in Egypt: a Bayesian coalescent approach, Mol. Biol. Evol., 20, 381, 10.1093/molbev/msg043 Qiu, 2005, Characterization of five nearly full-length genomes of early HIV type 1 strains in Ruili city: implications for the genesis of CRF07_BC and CRF08_BC circulating in China, AIDS Res. Hum. Retroviruses, 21, 1051, 10.1089/aid.2005.21.1051 Rodriguez, 1990, The general stochastic model of nucleotide substitution, J. Theor. Biol., 142, 485, 10.1016/S0022-5193(05)80104-3 Su, 2000, Characterization of a virtually full-length human immunodeficiency virus type 1 genome of a prevalent intersubtype (C/B') recombinant strain in China, J. Virol., 74, 11367, 10.1128/JVI.74.23.11367-11376.2000 Subbarao, 2000, Genetic characterization of incident HIV type 1 subtype E and B strains from a prospective cohort of injecting drug users in Bangkok, Thailand, AIDS Res. Hum. Retroviruses, 16, 699, 10.1089/088922200308693 Takebe, 2003, High prevalence of diverse forms of HIV-1 intersubtype recombinants in Central Myanmar: geographical hot spot of extensive recombination, AIDS, 17, 2077, 10.1097/00002030-200309260-00009 Tee, 2006, Identification of a novel circulating recombinant form (CRF33_01B) disseminating widely among various risk populations in Kuala Lumpur, Malaysia, J. Acquir. Immune Defic. Syndr., 43, 523, 10.1097/01.qai.0000242451.74779.a7 Tovanabutra, 2003, A new circulating recombinant form, CRF15_01B, reinforces the linkage between IDU and heterosexual epidemics in Thailand, AIDS Res. Hum. Retroviruses, 19, 561, 10.1089/088922203322230923 Tovanabutra, 2007, Identification of CRF34_01B, a second circulating recombinant form unrelated to and more complex than CRF15_01B, among injecting drug users in northern Thailand, AIDS Res. Hum. Retroviruses, 23, 829, 10.1089/aid.2006.0300 Wang, 2007, Complex patterns of the HIV-1 epidemic in Kuala Lumpur, Malaysia: evidence for expansion of circulating recombinant form CRF33_01B and detection of multiple other recombinants, Virology, 367, 288, 10.1016/j.virol.2007.05.033 Weniger, 1994, The molecular epidemiology of HIV in Asia, AIDS, 8, S13 Yang, 1994, Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods, J. Mol. Evol., 39, 306, 10.1007/BF00160154 Yang, 2002, On-going generation of multiple forms of HIV-1 intersubtype recombinants in the Yunnan Province of China, AIDS, 16, 1401, 10.1097/00002030-200207050-00012 Zhang, 2004, Molecular characterization of human immunodeficiency virus type 1 and hepatitis C virus in paid blood donors and injection drug users in China, J. Virol., 78, 13591, 10.1128/JVI.78.24.13591-13599.2004