Sequence analysis and typing of Saprolegnia strains isolated from freshwater fish from Southern Chinese regions

Aquaculture and Fisheries - Tập 2 - Trang 227-233 - 2017
Siya Liu1, Pengpeng Song1, Renjian Ou1, Wenhong Fang2, Mao Lin3, Jiming Ruan1, Xianle Yang1, Kun Hu1
1National Pathogen Collection Center for Aquatic Animals, Shanghai Ocean University, Shanghai 201306, China
2East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai 200090, China
3Jimei University, Fujian 361021, China

Tài liệu tham khảo

Ali, 2005, Morphological and biochemical alterations of oomycete fish pathogen Saprolegnia parasitica as affected by salinity, ascorbic acid and their synergistic action, Mycopathologia, 159, 231, 10.1007/s11046-004-6670-z Bangyeekhun, 2001, Characterisation of Saprolegnia sp. isolates from channel catfish, Diseases of Aquatic Organisms, 45, 53, 10.3354/dao045053 Bockelmann, 2008, Identification of yeasts of dairy origin by amplified ribosomal DNA restriction analysis (ARDRA), International Dairy Journal, 18, 1066, 10.1016/j.idairyj.2008.05.008 Brito, 2009, PCR-AGE, automated and manual methods to identify Candida strains from veterinary sources: A comparative approach, Veterinary Microbiology, 139, 318, 10.1016/j.vetmic.2009.06.031 Dick, 1969, Morphology and taxonomy of the oomycetes, with special reference to Saprolegniaceae, Leptomitaceae, and pithyaceae. I. sexual reproduction, New Phytologist, 68, 751, 10.1111/j.1469-8137.1969.tb06478.x Dieguez-Uribeondo, 2007, Re-evaluation of the enigmatic species complex Saprolegnia diclina-Saprolegnia parasitica based on morphological, physiological and molecular data, Fungal Genetics and Biology, 44, 585, 10.1016/j.fgb.2007.02.010 Die´guez-Uribeondo, 1996, Physiological characterization of Saprolegnia parasitica isolates from brown trout, Aquaculture, 140, 247, 10.1016/0044-8486(95)01176-5 Edgerton, 2004, Understanding the causes of disease in European freshwater crayfish, Conservation Biology, 18, 1466, 10.1111/j.1523-1739.2004.00436.x Fregeneda-Grandes, 2007, Fungi isolated from cultured eggs, alevins and broodfish of brown trout in a hatchery affected by saprolegniosis, Journal of Fish Biology, 71, 510, 10.1111/j.1095-8649.2007.01510.x Hatai, 1992, Mass mortality in cultured coho salmon (Oncorhynchus kisutch) due to Saprolegnia parasitica coker, Journal of Wildlife Diseases, 28, 532, 10.7589/0090-3558-28.4.532 Howe, 1999, Efficacy of hydrogen peroxide for treating saprolegniasis in channel catfish, Journal of Aquatic Animal Health, 11, 222, 10.1577/1548-8667(1999)011<0222:EOHPFT>2.0.CO;2 Huang, 1994, Analysis of genetic diversity in the crayfish plague fungus, Aphanomyces astaci, by random amplification of polymorphic DNA, Aquaculture, 126, 1, 10.1016/0044-8486(94)90243-7 Jara, 2008, Analysis of several methods for the extraction of high quality DNA from acetic acid bacteria in wine and vinegar for characterization by PCR-based methods, International Journal of Food Microbiology, 128, 336, 10.1016/j.ijfoodmicro.2008.09.008 Ke, 2009, Morphological and molecular phylogenetic analysis of two Saprolegnia sp. (Oomycetes) isolated from silver crucian carp and zebra fish, Mycological Research, 113, 637, 10.1016/j.mycres.2009.01.008 Koeypudsa, 2005, Influence of pH, temperature and sodium chloride concentration on growth rate of Saprolegnia sp, Journal of Scientific Research at Chulalongkorn University, 30, 123 Kumar, 2004, MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment, Briefings in Bioinformatics, 5, 150, 10.1093/bib/5.2.150 Leclerc, 2000, Taxonomic and phylogenetic analysis of Saprolegniaceae (Oomycetes) inferred from LSU rDNA and ITS sequence comparisons, Antonie Van Leeuwenhoek, 77, 369, 10.1023/A:1002601211295 Noga, 1993, Water mold infections of freshwater fish: Recent advances, Annual Review of Fish Diseases, 3, 291, 10.1016/0959-8030(93)90040-I Oláh, 1978, Effect of temperature, pH, antibiotics, formalin and malachite green on the growth and survival of Saprolegnia and Achlya parastic on fish, Aquaculture, 13, 273, 10.1016/0044-8486(78)90009-1 Paul, 2001, ITS region of the rDNA of Pythium longandrum, a new species; its taxonomy and its comparison with related species, FEMS Microbiology Letters, 202, 239, 10.1111/j.1574-6968.2001.tb10810.x Paul, 1999, Pythium prolatum isolated from soil in the Burgundy region: A new record for Europe, FEMS Microbiology Letters, 173, 69, 10.1111/j.1574-6968.1999.tb13486.x Paul, 2004, Saprolegnia multispora, a new oomycete isolated from water samples taken in a river in the Burgundian region of France, FEMS Microbiology Letters, 237, 393 Płoński, 2010, Quick path finding—quick algorithmic solution for unambiguous labeling of phylogenetic tree nodes, Computational Biology and Chemistry, 34, 300, 10.1016/j.compbiolchem.2010.10.002 Sandoval-Sierra, 2015, A Comprehensive protocol for improving the description of saprolegniales (Oomycota): Two practical examples (Saprolegnia aenigmatica sp. nov. and Saprolegnia racemosa sp. nov.), PLoS One, 10, e0132999, 10.1371/journal.pone.0132999 Sano, 1998, Control of fish disease, and the use of drugs and vaccines in Japan, Journal of Applied Ichthyology, 14, 131, 10.1111/j.1439-0426.1998.tb00630.x Seymour, 1970, The genus Saprolegnia, Nova Hedwigia, 19, 1 Técher, 2010, Novel perspectives to purify genomic DNA from high humic acid content and contaminated soils, Separation and Purification Technology, 75, 81, 10.1016/j.seppur.2010.07.014 Wardrip, 1999, Diagnostic exercise: Fluffy, white, cotton candy-like growth on the gills, fins, and skin of salamanders (Ambystoma tigrinum), Contemporary Topics in Laboratory Animal Science, 38, 81 van West, 2006, Saprolegnia parasitica, an oomycete pathogen with a fishy appetite: New challenges for an old problem, Mycologist, 20, 99, 10.1016/j.mycol.2006.06.004 White, 1990, Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, 315 Zhang, 2014, Identification of major pathogenic Saprolegnia speices in freshwater aquaculture of China, Journal of Shanghai Ocean University, 23, 80