Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively

Systematic and Applied Microbiology - Tập 36 - Trang 474-482 - 2013
Peter Vandamme1, Edward R.B. Moore2, Margo Cnockaert1, Charlotte Peeters1, Liselott Svensson-Stadler2, Kurt Houf3, Theodore Spilker4, John J. LiPuma4
1Laboratorium voor Microbiologie, Vakgroep Biochemie en microbiologie, Faculteit Wetenschappen, Universiteit Gent, Gent, Belgium
2Culture Collection University of Gothenburg (CCUG), Department of Clinical Bacteriology, Sahlgrenska University Hospital, Gothenburg, Sweden
3Vakgroep Veterinaire Volksgezondheid en Voedselveiligheid, Faculteit Diergeneeskunde, Universiteit Gent, Gent, Belgium
4Department of Pediatrics and Communicable Disease, University of Michigan Medical School, Ann Arbor, MI 48109, USA

Tài liệu tham khảo

Ezaki, 1989, Fluorometric deoxyribonucleic acid deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane-filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains, Int. J. Syst. Bacteriol., 39, 224, 10.1099/00207713-39-3-224 Gomila, 2011, Achromobacter marplatensis sp nov., isolated from a pentachlorophenol-contaminated soil, Int. J. Syst. Evol. Microbiol., 61, 2231, 10.1099/ijs.0.025304-0 Jolley, 2010, BIGSdb: Scalable analysis of bacterial genome variation at the population level, Bmc Bioinformatics, 11, 10.1186/1471-2105-11-595 Kersters, 1984, Bordetella avium sp. nov., isolated from the respiratory tracts of turkeys and other birds, Int. J. Syst. Bacteriol., 34, 56, 10.1099/00207713-34-1-56 Kiredjian, 1981, Taxonomy of the genus Alcaligenes, Ann. Microbiol. (Paris), B132, 337 Mesbah, 1989, Measurement of deoxyguanosine/thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine+cytosine of DNA, J. Chromatogr., 479, 297, 10.1016/S0021-9673(01)83344-6 Palys, 1997, Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data, Int. J. Syst. Bacteriol., 47, 1145, 10.1099/00207713-47-4-1145 Pitcher, 1989, Rapid extraction of bacterial genomic DNA with guanidium thiocyanate, Lett. Appl. Microbiol., 8, 151, 10.1111/j.1472-765X.1989.tb00262.x Ridderberg, 2012, Multilocus sequence analysis of isolates of Achromobacter from patients with cystic fibrosis reveals infecting species other than Achromobacter xylosoxidans, J. Clin. Microbiol., 50, 2688, 10.1128/JCM.00728-12 Schloss, 2009, Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities, Appl. Environ. Microbiol., 75, 7537, 10.1128/AEM.01541-09 Spilker, 2012, A multilocus sequence typing scheme implies population structure and reveals several putative novel Achromobacter species, J. Clin. Microbiol., 50, 3010, 10.1128/JCM.00814-12 Spilker, 2013, Identification and distribution of Achromobacter species in cystic fibrosis, J. Cystic Fibros., 10.1016/j.jcf.2012.10.002 Tamura, 1993, Estimation of the number of nucleotide substitutions in the control region of mitochondrial-DNA in humans and chimpanzees, Mol. Biol. Evol., 10, 512 Tamura, 2011, MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods, Mol. Biol. Evol., 28, 2731, 10.1093/molbev/msr121 Vandamme, 1993, Moraxella lincolnii sp. nov., isolated from the human respiratory tract, and reevaluation of the taxonomic position of Moraxella osloensis, Int. J. Syst. Bacteriol., 43, 474, 10.1099/00207713-43-3-474 Vandamme, 2013, Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples, Syst. Appl. Microbiol., 36, 1, 10.1016/j.syapm.2012.10.003 Vandamme, 2007, Burkholderia bryophila sp. nov. and Burkholderia megapolitana sp. nov., moss-associated species with antifungal and plant-growth-promoting properties, Int. J. Syst. Evol. Microbiol., 57, 2228, 10.1099/ijs.0.65142-0 Vandamme, 1992, Polyphasic taxonomic study of the emended genus Arcobacter with Arcobacter butzleri comb. nov. and Arcobacter skirrowii sp. nov., an aerotolerant bacterium isolated from veterinary specimens, Int. J. Syst. Bacteriol., 42, 344, 10.1099/00207713-42-3-344 Yabuuchi, 1998, Microbiol. Immunol., 42, 429, 10.1111/j.1348-0421.1998.tb02306.x