18S rRNA Secondary Structure and Phylogenetic Position of Peloridiidae (Insecta, Hemiptera)
Tóm tắt
Từ khóa
Tài liệu tham khảo
Bourgoin, 1993, Female genitalia in Hemiptera Fulgoromorpha, morphological and phylogenetic data, Ann. Soc. Entomol. Fr. (N.S.), 29, 225, 10.1080/21686351.1993.12277686
Bourgoin, T.1996. Phylogénie des hexapodes. La recherche des synapomorphies ne fait pas toujours le cladisme!Bull. Soc. Zool. Fr.121: 5–20.
Bourgoin, 1997, Molecular phylogeny of Fulgoromorpha (Insecta, Hemiptera, Archaeorrhyncha). The enigmatic Tettigometridae: Evolutionary affiliations and historical biogeography, Cladistics, 13, 207, 10.1111/j.1096-0031.1997.tb00316.x
Bourgoin, T, Chan, K, Ouvrard, D, and, Campbell, B. C. 1999, Character Analysis Using Ribosomal RNA Secondary Structure and Its Application to Hemiptera and Fulgoromorpha Phylogeny, 10th International Auchenorrhyncha Congress, Cardiff.
Breddin, 1897, Hemipteren, 10
Bremer, 1994, Branch support and tree stability, Cladistics, 10, 295, 10.1111/j.1096-0031.1994.tb00179.x
Burckhardt, 1991, New records of South American Peloridiidae (Homoptera: Coleorrhyncha), Rev. Chilena Entomol., 19, 71
Campbell, 1995, Paraphyly of Homoptera and Auchenorrhyncha inferred from 18S rDNA nucleotide sequences, Syst. Entomol., 20, 175, 10.1111/j.1365-3113.1995.tb00090.x
Chastain, 1991, Structural elements in RNA, Prog. Nucleic Acid Res. Mol. Biol., 41, 131, 10.1016/S0079-6603(08)60008-2
China, 1962, South American Peloridiidae (Hemiptera–Homoptera: Coleorrhyncha), Trans. R. Entomol. Soc. Lond., 114, 131, 10.1111/j.1365-2311.1962.tb01077.x
Clemons, 1999, Structure of a bacterial 30S ribosomal subunit at 5.5 Ã resolution, Nature, 400, 833, 10.1038/23631
Cobben, 1978, Evolutionary trends in Heteroptera. Part II. Mouthpart-structures and feeding strategies, Mededelingen Landbouwhogeschool Wageningen Nederland, 78–5, 407
Corpet, 1994, RNAlign program: Alignment of RNA sequences using both primary and secondary structures, Comput. Appl. Biosci., 10, 389
De Pinna, 1991, Concepts and tests of homology in the cladistic paradigme, Cladistics, 7, 367, 10.1111/j.1096-0031.1991.tb00045.x
De Rijk, 1993, DCSE, an interactive tool for sequence alignment and secondary structure research, Comput. Appl. Biosci., 9, 735
Evans, 1963, The phylogeny of Homoptera, Annu. Rev. Entomol., 8, 77, 10.1146/annurev.en.08.010163.000453
Evans, 1981, A review of present knowledge of the family Peloridiidae and new genera and new species from New Zealand and New Caledonia (Hemiptera: Insecta), Rec. Austral. Mus., 34, 381, 10.3853/j.0067-1975.34.1982.296
Fields, 1996, An analysis of large RNA sequences folded by a thermodynamic method, Folding Design, 1, 419, 10.1016/S1359-0278(96)00058-2
Gladstein, D. S, and, Wheeler, W. C. 1997, POY: Phylogeny Reconstruction via Direct Optimization, anon, ftp.amnh.org/pub/wheeler/programs/poy, American Museum of Natural History, New York.
Gutell, 1993, Comparative studies of RNA: Inferring higher-order structure from patterns of sequence variation, Curr. Opin. Struct. Biol., 3, 313, 10.1016/S0959-440X(05)80101-0
Gutell, 1994, Collection of small subunit (16S- and 16S-like) ribosomal RNA structures, Nucleic Acids Res., 22, 3502, 10.1093/nar/22.17.3502
Gutell, 1994, Lessons from an evolving RNA: 16S and 23S RNA structures from a comparative perspective, Microbiol. Rev., 58, 10, 10.1128/MR.58.1.10-26.1994
Hancock, 1988, Evolution of the secondary structures and compensatory mutations of the ribosomal RNAs of Drosophila melanogaster, Mol. Biol. Evol., 5, 393
Hendriks, 1988, Primary and secondary structure of the 18S ribosomal RNA of the bird spider Eurypelma californica and evolutionary relationships among eukaryotic phyla, Eur. J. Biochem., 177, 15, 10.1111/j.1432-1033.1988.tb14339.x
Hendriks, 1988, Primary and secondary structure of the 18S ribosomal RNA of the insect species Tenebrio molitor, FEBS Lett., 232, 115, 10.1016/0014-5793(88)80398-3
Hennig, 1966
Jaeger, 1989, Improved predictions of secondary structures for RNA, Proc. Natl. Acad. Sci. USA, 86, 7706, 10.1073/pnas.86.20.7706
Kjer, 1995, Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: An example of alignment and data presentation from the frogs, Mol. Phylogenet. Evol., 4, 314, 10.1006/mpev.1995.1028
Konings, 1989, Pattern analysis of RNA secondary structure: Similarity and consensus of minimal-energy folding, J. Mol. Biol., 207, 597, 10.1016/0022-2836(89)90468-3
Konings, 1995, A comparison of thermodynami foldings with comparatively derived strutures of 16S and 16S-like rRNAs, RNA, 1, 559
Kwon, 1991, The longest 18S ribosomal RNA ever known: Nucleotide sequence and presumed secondary structure of the 18S RNA of the pea aphid, Acyrthosiphon pisum, Eur. J. Biochem., 202, 827, 10.1111/j.1432-1033.1991.tb16439.x
Leontis, 1998, A common motif organizes the structure of multi-helix loops in 16S and 23S ribosomal RNAs, J. Mol. Biol., 283, 571, 10.1006/jmbi.1998.2106
Mathews, 1999, Expanded sequence dependence of thermodynamic parameters provides robust prediction of RNA secondary structure, J. Mol. Evol., 288, 911
Myers, 1929, The systematic position of the Peloridiidae as elucidated by a further study of the external anatomy of Hemiodoecus leai China, Ann. Mag. Nat. Hist., 105, 282, 10.1080/00222932908672971
Nelles, 1984, Nucleotide sequence of a crustacean 18S ribosomal RNA gene and secondary structure of eukaryotic small subunit ribosomal RNAs, Nucleic Acids Res., 12, 8749, 10.1093/nar/12.23.8749
Noller, 1984, Structure of the ribosomal RNA, Annu. Rev. Biochem., 53, 119, 10.1146/annurev.bi.53.070184.001003
Patterson, 1982, Morphological characters and homology, 21
Remane, 1956
Rousset, 1991, Evolution of compensatory substitutions through G · U intermediate state in Drosophila RNA, Proc. Natl. Acad. Sci. USA, 88, 10032, 10.1073/pnas.88.22.10032
Saiki, 1988, Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase, Science, 239, 487, 10.1126/science.2448875
Sanger, 1977, DNA sequencing with chain-terminating inhibitors, Proc. Natl. Acad. Sci. USA, 74, 5436, 10.1073/pnas.74.12.5463
Schlee, 1969, Morphologie und Symbiose: Ihre Beweiskraft für die Verwandtschaftsbeziehungen der Coleorrhyncha, Stuttg. Beitr. Naturk., 210, 1
Schuh, 1995
Shcherbakov, 1988, Origin and evolution of Auchenorrhyncha (Homoptera) based upon fossil evidence, Proc. 28th Int. Congr. Entomol., 8
Smith, 1989, RNA sequence data in phylogenetic reconstruction: Testing the limits of its resolution, Cladistics, 5, 321, 10.1111/j.1096-0031.1989.tb00567.x
Sorensen, 1995, Non-monophyly of Auchenorrhyncha (“Homoptera”), based upon 18S rDNA phylogeny: Eco-evolutionary and cladistic implications within pre-Heteropterodea Hemiptera (S. L.) and a proposal for new monophyletic suborders, Pan-Pacific Entomol., 71, 31
Swofford, D. L. 1998, PAUP*. “Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4, Sinauer, Sunderland, MA.
Thompson, 1994, CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice, Nucleic Acids Res., 22, 4673, 10.1093/nar/22.22.4673
van de Peer, 2000, The European Small Subunit Ribosomal RNA database, Nucleic Acids Res., 28, 175, 10.1093/nar/28.1.175
von Dohlen, 1995, Molecular phylogeny of the Homoptera: A paraphyletic Aascon, J. Mol. Evol., 41, 211, 10.1007/BF00170675
Wheeler, 1994, MALIGN: A multiple sequence alignment program, J. Hered., 85, 417, 10.1093/oxfordjournals.jhered.a111492
Wheeler, 1988, Paired sequence difference in ribosomal RNAs: Evolutionary and phylogenetic implications, Mol. Biol. Evol., 5, 90
Wheeler, 1993, Cladistic relationships among higher groups of Heteroptera: Congruence between morphological and molecular data sets, Entomol. Scand., 24, 121, 10.1163/187631293X00235
Winker, 1991, A Definition of the domains Archaea, Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics, Syst. Appl. Microbiol., 14, 305, 10.1016/S0723-2020(11)80303-6
Zrzavy, 1992, Evolution of antennae and historical ecology of the hemipteran insects (Paraneoptera), Acta. Entomol. Bohem., 89, 77
Zuker, 1999, Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide