<i>Ralstonia metallidurans</i>, a bacterium specifically adapted to toxic metals: towards a catalogue of metal-responsive genes
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Mergeay M. Houba C. Gerits J. (1978) Extrachromosomal inheritance controlling resistance to cadmium, cobalt, copper and zinc ions: evidence from curing in a Pseudomonas [proceedings]. Arch. Int. Physiol. Biochem. 86, 440–442.
Mergeay M. Nies D. Schlegel H.G. Gerits J. Charles P. Van Gijsegem F. (1985) Alcaligenes eutrophus CH34 is a facultative chemolithotroph with plasmid-bound resistance to heavy metals. J. Bacteriol. 162, 328–334.
Nies D. Mergeay M. Friedrich B. Schlegel H.G. (1987) Cloning of plasmid genes encoding resistance to cadmium, zinc, and cobalt in Alcaligenes eutrophus CH34. J. Bacteriol. 169, 4865–4868.
Schmidt T. Schlegel H.G. (1994) Combined nickel-cobalt-cadmium resistance encoded by the ncc locus of Alcaligenes xylosoxidans 31A. J. Bacteriol. 176, 7045–7054.
Liesegang H. Lemke K. Siddiqui R.A. Schlegel H.G. (1993) Characterization of the inducible nickel and cobalt resistance determinant cnr from pMOL28 of Alcaligenes eutrophus CH34. J. Bacteriol. 175, 767–778.
Mergeay M. Gerits J. Houba C. (1978) [Transmissible resistance factor to cobalt in Pseumononas hydrogenomonas]. C.R. Séances Soc. Biol. Fil. 172, 575–579.
Friedrich B. Hogrefe C. Schlegel H.G. (1981) Naturally occurring genetic transfer of hydrogen-oxidizing ability between strains of Alcaligenes eutrophus . J. Bacteriol. 147, 198–205.
Lejeune P. Mergeay M. Van Gijsegem F. Faelen M. Gerits J. Toussaint A. (1983) Chromosome transfer and R-prime plasmid formation mediated by plasmid pULB113 (RP4::mini-Mu) in Alcaligenes eutrophus CH34 and Pseudomonas fluorescens 6.2. J. Bacteriol. 155, 1015–1026.
Diels L. Mergeay M. (1990) DNA probe-mediated detection of resistant bacteria from soils highly polluted by heavy metals. Appl. Environ. Microbiol. 56, 1485–1491.
Diels L. Faelen M. Mergeay M. Nies D. (1985) Mercury transposons from plasmids governing multiple resistance to heavy metals in Alcaligenes eutrophus CH34. Arch. Int. Physiol. Biochem. 93, 27–28.
Mergeay, M. (2000) Bacteria adapted to industrial biotopes: the metal resistant Ralstonia. In: Bacterial Stress Responses (Hengge-Aronis, R. and Storz, G., Ed.), pp. 403–414. ASM Press, Washington, DC.
Nies D.H. Silver S. (1989) Metal ion uptake by a plasmid-free metal-sensitive Alcaligenes eutrophus strain. J. Bacteriol. 171, 4073–4075.
Nies D.H. (1992) CzcR and CzcD, gene products affecting regulation of resistance to cobalt, zinc, and cadmium (czc system) in Alcaligenes eutrophus . J. Bacteriol. 174, 8102–8110.
Nies D.H. (1995) The cobalt, zinc, and cadmium efflux system CzcABC from Alcaligenes eutrophus functions as a cation-proton antiporter in Escherichia coli . J. Bacteriol. 177, 2707–2712.
Siddiqui R.A. Schlegel H.G. Meyer M. (1988) Inducible and constitutive expression of pMOL28-encoded nickel resistance in Alcaligenes eutrophus N9A. J. Bacteriol. 170, 4188–4793.
Siddiqui R.A. Benthin K. Schlegel H.G. (1989) Cloning of pMOL28-encoded nickel resistance genes and expression of the genes in Alcaligenes eutrophus and Pseudomonas spp. J. Bacteriol. 171, 5071–5078.
Nies A. Nies D.H. Silver S. (1989) Cloning and expression of plasmid genes encoding resistances to chromate and cobalt in Alcaligenes eutrophus . J. Bacteriol. 171, 5065–5070.
Nies A. Nies D.H. Silver S. (1990) Nucleotide sequence and expression of a plasmid-encoded chromate resistance determinant from Alcaligenes eutrophus . J. Biol. Chem. 265, 5648–5653.
Stoppel R.D. Schlegel H.G. (1995) Nickel-resistant bacteria from anthropogenically nickel-polluted and naturally nickel-percolated ecosystems. Appl. Environ. Microbiol. 61, 2276–2285.
Margesin R. Schinner F. (1997) Heavy metal resistant Arthrobacter sp. – a tool for studying conjugational plasmid transfer between gram-negative and gram-positive bacteria. J. Basic Microbiol. 37, 217–227.
Borremans B. Hobman J.L. Provoost A. Brown N.L. van der Lelie D. (2001) Cloning and functional analysis of the pbr lead resistance determinant of Ralstonia metallidurans CH34. J. Bacteriol. 183, 551–568.
Vallaeys, T., Benotmane, A., Noël-Georis, I., Borremans, B., Monchy, S., Wattiez, R., Mergeay, M., Taghavi, S. and van der Lelie, D. The organisation of plasmid-borne genes for resistance to copper and of their chromosomal counterparts in Ralstonia metallidurans. (in preparation).
Rensing C. Pribyl T. Nies D.H. (1997) New functions for the three subunits of the CzcCBA cation-proton antiporter. J. Bacteriol. 179, 6871–6879.
Grosse C. Grass G. Anton A. Franke S. Santos A.N. Lawley B. Brown N.L. Nies D.H. (1999) Transcriptional organization of the czc heavy-metal homeostasis determinant from Alcaligenes eutrophus . J. Bacteriol. 181, 2385–2393.
Stoppel R.D. Meyer M. Schlegel H.G. (1995) The nickel resistance determinant cloned from the enterobacterium Klebsiella oxytoca: conjugational transfer, expression, regulation and DNA homologies to various nickel-resistant bacteria. Biometals 8, 70–79.
Gilis A. Khan M.A. Cornelis P. Meyer J.M. Mergeay M. van der Lelie D. (1996) Siderophore-mediated iron uptake in Alcaligenes eutrophus CH34 and identification of aleB encoding the ferric iron-alcaligin E receptor. J. Bacteriol. 178, 5499–5507.
Gilis A. Corbisier P. Baeyens W. Taghavi S. Mergeay M. van der Lelie D. (1998) Effect of the siderophore alcaligin E on the bioavailability of Cd to Alcaligenes eutrophus CH34. J. Ind. Microbiol. Biotechnol. 20, 61–68.
Melchior F. Ledrich M.L. Foucaud L. Falla J.A. (2001) Rapid identification of Ralstonia eutropha strain CH34 using monoclonal antibodies. Hybrid Hybridomics 20, 325–332.
Top E. Mergeay M. Springael D. Verstraete W. (1990) Gene escape model: transfer of heavy metal resistance genes from Escherichia coli to Alcaligenes eutrophus on agar plates and in soil samples. Appl. Environ. Microbiol. 56, 2471–2479.
Weekers F. Jacques P.H. Springael D. Mergeay M. Diels L. Thonart P.H. (1998) Effect of drying on bioremediation bacteria properties. Appl. Biochem. Biotechnol. 70–72, 311–322.
Weekers F. Rodriguez C. Jacques P. Mergeay M. Thonart P. (2001) Dissemination of catabolic plasmids among desiccation-tolerant bacteria in soil microcosms. Appl. Biochem. Biotechnol. 91–93, 219–232.
Diels L. Springael D. van der Lelie N. Top E. Mergeay M. (1993) Use of DNA probes and plasmid capture in a search for new interesting environmental genes. Sci. Total Environ. 139–140, 471–478.
Corbisier P. (1997) Bacterial metal-lux biosensors for a rapid determination of the heavy metal bioavailability and toxicity in solid samples. Res. Microbiol. 148, 534–536.
Peitzsch N. Eberz G. Nies D.H. (1998) Alcaligenes eutrophus as a bacterial chromate sensor. Appl. Environ. Microbiol. 64, 453–458.
van der Lelie D. Corbisier P. Baeyens W. Wuertz S. Diels L. Mergeay M. (1994) The use of biosensors for environmental monitoring. Res. Microbiol. 145, 67–74.
Heijerick D.G. Janssen C.R. Karlen C. Wallinder I.O. Leygraf C. (2002) Bioavailability of zinc in runoff water from roofing materials. Chemosphere 47, 1073–1080.
Dong Q. Springael D. Schoeters J. Nuyts G. Mergeay M. Diels L. (1998) Horizontal transfer of bacterial heavy metal resistance genes and its applications in activated sludge systems. Water Sci. Technol. 37, 465–468.
Lodewyckx C. Taghavi S. Mergeay M. Vangronsveld J. Clijsters H. van der Lelie D. (2001) The effect of recombinant heavy metal resistant endophytic bacteria in heavy metal uptake by their host plant. Int. J. Phytoremediat. 3, 173–187.
Taghavi S. van der Lelie D. Mergeay M. (1994) Electroporation of Alcaligenes eutrophus with (mega) plasmids and genomic DNA fragments. Appl. Environ. Microbiol. 60, 3585–3591.
Springael D. Diels L. Hooyberghs L. Kreps S. Mergeay M. (1993) Construction and characterization of heavy metal-resistant haloaromatic-degrading Alcaligenes eutrophus strains. Appl. Environ. Microbiol. 59, 334–339.
Szpirer C. Top E. Couturier M. Mergeay M. (1999) Retrotransfer or gene capture: a feature of conjugative plasmids, with ecological and evolutionary significance. Microbiology 145, 3321–3329.
Dong Q. Sadouk A. van der Lelie D. Taghavi S. Ferhat A. Nuyten J.M. Borremans B. Mergeay M. Toussaint A. (1992) Cloning and sequencing of IS1086, an Alcaligenes eutrophus insertion element related to IS30 and IS4351 . J. Bacteriol. 174, 8133–8138.
Collard J.M. Provoost A. Taghavi S. Mergeay M. (1993) A new type of Alcaligenes eutrophus CH34 zinc resistance generated by mutations affecting regulation of the cnr cobalt-nickel resistance system. J. Bacteriol. 175, 779–784.
Mergeay, M. (1995) Heavy metal resistances in microbial ecosystems. In: Molecular Microbial Ecology Manual, pp. 1–17. Kluwer Academic, Dordrecht.
Tseng T.T. Gratwick K.S. Kollman J. Park D. Nies D.H. Goffeau A. Saier M.H. Jr. (1999) The RND permease superfamily: an ancient, ubiquitous and diverse family that includes human disease and development proteins. J. Mol. Microbiol. Biotechnol. 1, 107–125.
Springael D. Kreps S. Mergeay M. (1993) Identification of a catabolic transposon, Tn4371, carrying biphenyl and 4-chlorobiphenyl degradation genes in Alcaligenes eutrophus A5. J. Bacteriol. 175, 1674–1681.
Toussaint, A., Merlin, C., Monchy, S., Benotmane, M., Leplae, R., Coulson, A., Mergeay, M. and Springael, D. (2003) The biphenyl catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmids. Appl. Environ. Microbiol. (accepted).
Rensing C. Ghosh M. Rosen B.P. (1999) Families of soft-metal-ion-transporting ATPases. J. Bacteriol. 181, 5891–5897.
Odermatt A. Suter H. Krapf R. Solioz M. (1993) Primary structure of two P-type ATPases involved in copper homeostasis in Enterococcus hirae . J. Biol. Chem. 268, 12775–12779.
Franke S. Grass G. Nies D.H. (2001) The product of the ybdE gene of the Escherichia coli chromosome is involved in detoxification of silver ions. Microbiology 147, 965–972.
Anton A. Grosse C. Reissmann J. Pribyl T. Nies D.H. (1999) CzcD is a heavy metal ion transporter involved in regulation of heavy metal resistance in Ralstonia sp. strain CH34. J. Bacteriol. 181, 6876–6881.
Kunito T. Kusano T. Oyaizu H. Senoo K. Kanazawa S. Matsumoto S. (1996) Cloning and sequence analysis of czc genes in Alcaligenes sp. strain CT14. Biosci. Biotechnol. Biochem. 60, 699–704.
Nies D.H. Koch S. Wachi S. Peitzsch N. Saier M.H. Jr. (1998) CHR, a novel family of prokaryotic proton motive force-driven transporters probably containing chromate/sulfate antiporters. J. Bacteriol. 180, 5799–5802.
Neyt C. Iriarte M. Thi V.H. Cornelis G.R. (1997) Virulence and arsenic resistance in Yersiniae . J. Bacteriol. 179, 612–619.
Wattiez, R., Auquier, V., Noël-Georis, I., Vallaeys, T., Vandenbussche, G., Ruysschaert, J.-M., Falmagne, P. and Mergeay, M. (2003) Proteomic analysis of copper response in Ralstonia metallidurans CH34 unravels new resistance mechanisms. (in preparation).
Noël-Georis, I., Vallaeys, T., Chauvaux, R., Monchy, S., Falmagne, P., Mergeay, M. and Wattiez, R. (2003) Global analysis of the Ralstonia metallidurans proteome: prelude for the large scale study of heavy metal response. (submitted).
Liebert C.A. Summers A.O. (1999) Transposon Tn21, flagship of the floating genome. Microbiol. Mol. Biol. Rev. 63, 507–522.
O’Connor C.D. Adams P. Alefounder P. Farris M. Kinsella N. Li Y. Payot S. Skipp P. (2000) The analysis of microbial proteomes: strategies and data exploitation. Electrophoresis 21, 1178–1186.
Bender C.L. Cooksey D.A. (1986) Indigenous plasmids in Pseudomonas syringae pv. tomato conjugative transfer and role in copper resistance. J. Bacteriol. 165, 534–541.
Bender C.L. Cooksey D.A. (1987) Molecular cloning of copper resistance genes from Pseudomonas syringae pv. tomato. J. Bacteriol. 169, 470–474.
Mellano M.A. Cooksey D.A. (1988) Nucleotide sequence and organization of copper resistance genes from Pseudomonas syringae pv. tomato. J. Bacteriol. 170, 2879–2883.
Mills S.D. Jasalavich C.A. Cooksey D.A. (1993) A two-component regulatory system required for copper-inducible expression of the copper resistance operon of Pseudomonas syringae . J. Bacteriol. 175, 1656–1664.
Mills S.D. Lim C.K. Cooksey D.A. (1994) Purification and characterization of CopR, a transcriptional activator protein that binds to a conserved domain (cop box) in copper-inducible promoters of Pseudomonas syringae . Mol. Gen. Genet. 244, 341–351.
Kim D. Forst S. (2001) Genomic analysis of the histidine kinase family in bacteria and archea. Microbiology 147, 1197–1212.
Adaikkalam V. Swarup S. (2002) Molecular characterization of an operon, cueAR, encoding a putative P1-type ATPase and a MerR-type regulatory protein involved in copper homeostasis in Pseudomonas putida . Microbiology (UK) 148, 2857–2867.