Klebsiella pneumoniae causing urinary tract infections in companion animals and humans: population structure, antimicrobial resistance and virulence genes

Journal of Antimicrobial Chemotherapy - Tập 74 Số 3 - Trang 594-602 - 2019
Cátia Marques1, Juliana Menezes1, Adriana Belas1, Catarina Aboim1, Patrícia Cavaco‐Silva2,3, Graça Trigueiro4, L.T. Gama1, Constança Pomba1
1CIISA - Center for Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, University of Lisbon, Lisbon, Portugal
2Centro de Investigação Interdisciplinar Egas Moniz, Instituto Universitário Egas Moniz, Caparica, Portugal
3Technophage, Lisboa, Portugal
4Laboratório de Análises Clínicas Dr. Joaquim Chaves, Lisboa, Portugal

Tóm tắt

Từ khóa


Tài liệu tham khảo

Flores-Mireles, 2015, Urinary tract infections: epidemiology, mechanisms of infection and treatment options, Nat Rev Microbiol, 13, 269, 10.1038/nrmicro3432

Weese, 2011, Antimicrobial use guidelines for treatment of urinary tract disease in dogs and cats: Antimicrobial Guidelines Working Group of the International Society for Companion Animal Infectious Diseases, Vet Med Int, 2011, 263768., 10.4061/2011/263768

Marques, 2018, Increase in antimicrobial resistance and emergence of major international high-risk clonal lineages in dogs and cats with urinary tract infection: 16 year retrospective study, J Antimicrob Chemother, 73, 377, 10.1093/jac/dkx401

2017

2017

Pomba, 2016, Public health risk of antimicrobial resistance transfer from companion animals, J Antimicrob Chemother, 72, 957

Ewers, 2014, Clonal spread of highly successful ST15-CTX-M-15 Klebsiella pneumoniae in companion animals and horses, J Antimicrob Chemother, 69, 2676, 10.1093/jac/dku217

Harada, 2016, Phenotypic and molecular characterization of antimicrobial resistance in Klebsiella spp. isolates from companion animals in Japan: clonal dissemination of multidrug-resistant extended-spectrum β-lactamase-producing Klebsiella pneumoniae, Front Microbiol, 7, 1021, 10.3389/fmicb.2016.01021

Hidalgo, 2013, Klebsiella pneumoniae sequence type 11 from companion animals bearing ArmA methyltransferase, DHA-1 β-lactamase, and QnrB4, Antimicrob Agents Chemother, 57, 4532, 10.1128/AAC.00491-13

Donati, 2014, Extended-spectrum-β-lactamases, AmpC β-lactamases and plasmid mediated quinolone resistance in Klebsiella spp. from companion animals in Italy, PLoS One, 9, e90564, 10.1371/journal.pone.0090564

Wohlwend, 2015, Third-generation-cephalosporin-resistant Klebsiella pneumoniae isolates from humans and companion animals in Switzerland: spread of a DHA-producing sequence type 11 clone in a veterinary setting, Antimicrob Agents Chemother, 59, 2949, 10.1128/AAC.04408-14

Kuan, 2016, Extended-spectrum β-lactamase producing Escherichia coli and Klebsiella pneumoniae isolates from the urine of dogs and cats suspected of urinary tract infection in a veterinary teaching hospital, Taiwan Vet J, 42, 143, 10.1142/S1682648515500274

Maeyama, 2018, Prevalence of ESBL/AmpC genes and specific clones among the third-generation cephalosporin-resistant Enterobacteriaceae from canine and feline clinical specimens in Japan, Vet Microbiol, 216, 183, 10.1016/j.vetmic.2018.02.020

Zogg, 2018, High prevalence of extended-spectrum β-lactamase producing Enterobacteriaceae among clinical isolates from cats and dogs admitted to a veterinary hospital in Switzerland, Front Vet Sci, 5, 62, 10.3389/fvets.2018.00062

Holt, 2015, Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health, Proc Natl Acad Sci USA, 112, E3574, 10.1073/pnas.1501049112

Stahlhut, 2009, Population variability of the FimH Type 1 fimbrial adhesin in Klebsiella pneumoniae, J Bacteriol, 191, 1941, 10.1128/JB.00601-08

Podschun, 1993, Serotypes, hemagglutinins, siderophore synthesis, and serum resistance of Klebsiella isolates causing human urinary tract infections, J Infect Dis, 168, 1415, 10.1093/infdis/168.6.1415

El Fertas-Aissani, 2013, Virulence profiles and antibiotic susceptibility patterns of Klebsiella pneumoniae strains isolated from different clinical specimens, Pathol Biol, 61, 209, 10.1016/j.patbio.2012.10.004

Ranjbar, 2016, Distribution of virulence genes and genotyping of CTX-M-15-producing Klebsiella pneumoniae isolated from patients with community-acquired urinary tract infection (CA-UTI), Microb Pathog, 100, 244, 10.1016/j.micpath.2016.10.002

Wasfi, 2016, Molecular typing and virulence analysis of multidrug resistant Klebsiella pneumoniae clinical isolates recovered from Egyptian hospitals, Sci Rep, 6, 38929, 10.1038/srep38929

Kovtunovych, 2003, A PCR-mediated method for discrimination of Klebsiella oxytoca between closely related bacteria in environmental and clinical specimens, Biopolym Cell, 19, 520, 10.7124/bc.00067D

Padmavathy, 2012, Rapid and sensitive detection of major uropathogens in a single-pot multiplex PCR assay, Curr Microbiol, 65, 44, 10.1007/s00284-012-0126-3

2013, Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated from Animals—Fourth Edition: Approved Standard VET01-A4

2013, Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated from Animals—Second Informational Supplement VET01-S2

2018, Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated from Animals—Fourth Edition: VET08

2010, Comité de l’antibiogramme de la Société Française de Microbiologie: Recommandations 2010

2017, Performance Standards for Antimicrobial Susceptibility Testing—Twenty-Seventh Edition. Approved Standard M100-S27

Magiorakos, 2012, Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance, Clin Microbiol Infect, 18, 268, 10.1111/j.1469-0691.2011.03570.x

Pomba, 2006, Improved multiplex PCR method for the rapid detection of β-lactamase genes in Escherichia coli of animal origin, Diagn Microbiol Infect Dis, 56, 103, 10.1016/j.diagmicrobio.2006.03.005

Pérez-Pérez, 2002, Detection of plasmid-mediated AmpC β-lactamase genes in clinical isolates by using multiplex PCR, J Clin Microbiol, 40, 2153, 10.1128/JCM.40.6.2153-2162.2002

Guessennd, 2008, Résistance aux quinolones de type qnr chez les entérobactéries productrices de bêta-lactamases à spectre élargi à Abidjan en Côte d’Ivoire, Pathol Biol (Paris), 56, 439, 10.1016/j.patbio.2008.07.025

Edelstein, 2003, Prevalence and molecular epidemiology of CTX-M extended-spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae in Russian hospitals, Antimicrob Agents Chemother, 47, 3724, 10.1128/AAC.47.12.3724-3732.2003

Gonullu, 2008, Dissemination of CTX-M-15 β-lactamase genes carried on Inc FI and FII plasmids among clinical isolates of Escherichia coli in a University Hospital in Istanbul, Turkey, J Clin Microbiol, 46, 1110, 10.1128/JCM.01974-07

Frana, 2001, Relative distribution and conservation of genes encoding aminoglycoside-modifying enzymes in Salmonella enterica serotype Typhimurium phage type DT104, Appl Environ Microbiol, 67, 445, 10.1128/AEM.67.1.445-448.2001

Sáenz, 2004, Mechanisms of resistance in multiple-antibiotic-resistant Escherichia coli strains of human, animal, and food origins, Antimicrob Agents Chemother, 48, 3996, 10.1128/AAC.48.10.3996-4001.2004

Robicsek, 2006, Fluoroquinolone-modifying enzyme: a new adaptation of a common aminoglycoside acetyltransferase, Nat Med, 12, 83, 10.1038/nm1347

Guardabassi, 2000, Distribution and in-vitro transfer of tetracycline resistance determinants in clinical and aquatic Acinetobacter strains, J Med Microbiol, 49, 929, 10.1099/0022-1317-49-10-929

Robicsek, 2006, qnr prevalence in ceftazidime-resistant Enterobacteriaceae isolates from the United States, Antimicrob Agents Chemother, 50, 2872, 10.1128/AAC.01647-05

Cavaco, 2009, qnrD, a novel gene conferring transferable quinolone resistance in Salmonella enterica serovar Kentucky and Bovismorbificans strains of human origin, Antimicrob Agents Chemother, 53, 603, 10.1128/AAC.00997-08

Wang, 2009, New plasmid-mediated quinolone resistance gene, qnrC, found in a clinical isolate of Proteus mirabilis, Antimicrob Agents Chemother, 53, 1892, 10.1128/AAC.01400-08

Guerra, 2001, Multidrug resistance is mediated by large plasmids carrying a Class 1 integron in the emergent Salmonella enterica serotype [4,5,12:i:−], Antimicrob Agents Chemother, 45, 1305, 10.1128/AAC.45.4.1305-1308.2001

Navia, 2003, Detection of dihydrofolate reductase genes by PCR and RFLP, Diagn Microbiol Infect Dis, 46, 295, 10.1016/S0732-8893(03)00062-2

Maynard, 2003, Antimicrobial resistance genes in enterotoxigenic Escherichia coli O149:K91 isolates obtained over a 23-year period from pigs, Antimicrob Agents Chemother, 47, 3214, 10.1128/AAC.47.10.3214-3221.2003

Perreten, 2003, A new sulfonamide resistance gene (sul3) in Escherichia coli is widespread in the pig population of Switzerland, Antimicrob Agents Chemother, 47, 1169, 10.1128/AAC.47.3.1169-1172.2003

Kim, 2009, oqxAB encoding a multidrug efflux pump in human clinical isolates of Enterobacteriaceae, Antimicrob Agents Chemother, 53, 3582, 10.1128/AAC.01574-08

Lee, 2007, Collateral damage of flomoxef therapy: in vivo development of porin deficiency and acquisition of blaDHA-1 leading to ertapenem resistance in a clinical isolate of Klebsiella pneumoniae producing CTX-M-3 and SHV-5 β-lactamases, J Antimicrob Chemother, 60, 410, 10.1093/jac/dkm215

Compain, 2014, Multiplex PCR for detection of seven virulence factors and K1/K2 capsular serotypes of Klebsiella pneumoniae, J Clin Microbiol, 52, 4377, 10.1128/JCM.02316-14

Johnson, 2000, Molecular epidemiological and phylogenetic associations of two novel putative virulence genes, iha and iroNE. coli, among Escherichia coli isolates from patients with urosepsis, Infect Immun, 68, 3040, 10.1128/IAI.68.5.3040-3047.2000

Johnson, 2000, Extended virulence genotypes of Escherichia coli strains from patients with urosepsis in relation to phylogeny and host compromise, J Infect Dis, 181, 261, 10.1086/315217

Schubert, 2000, High-pathogenicity island of Yersinia pestis in Enterobacteriaceae isolated from blood cultures and urine samples: prevalence and functional expression, J Infect Dis, 182, 1268, 10.1086/315831

Yamamoto, 1995, Detection of urovirulence factors in Escherichia coli by multiplex polymerase chain reaction, FEMS Immunol Med Microbiol, 12, 85, 10.1111/j.1574-695X.1995.tb00179.x

Rodrigues, 2016, KPC-3-producing Klebsiella pneumoniae in Portugal linked to previously circulating non-CG258 lineages and uncommon genetic platforms (Tn4401d-IncFIA and Tn4401d-IncN), Front Microbiol, 7, 1000, 10.3389/fmicb.2016.01000

Kaase, 2014, Fosfomycin susceptibility in carbapenem-resistant Enterobacteriaceae from Germany, J Clin Microbiol, 52, 1893, 10.1128/JCM.03484-13

Rodrigues, 2014, Expansion of ESBL-producing Klebsiella pneumoniae in hospitalized patients: a successful story of international clones (ST15, ST147, ST336) and epidemic plasmids (IncR, IncFIIK), Int J Med Microbiol, 304, 1100, 10.1016/j.ijmm.2014.08.003

Machado, 2006, Dissemination in Portugal of CTX-M-15-, OXA-1-, and TEM-1-producing Enterobacteriaceae strains containing the aac(6')-Ib-cr gene, which encodes an aminoglycoside- and fluoroquinolone-modifying enzyme, Antimicrob Agents Chemother, 50, 3220, 10.1128/AAC.00473-06

Vubil, 2017, Outbreak of KPC-3-producing ST15 and ST348 Klebsiella pneumoniae in a Portuguese hospital, Epidemiol Infect, 145, 595, 10.1017/S0950268816002442

Manageiro, 2015, Predominance of KPC-3 in a survey for carbapenemase-producing Enterobacteriaceae in Portugal, Antimicrob Agents Chemother, 59, 3588, 10.1128/AAC.05065-14

Ovejero, 2017, Highly tigecycline-resistant Klebsiella pneumoniae sequence type 11 (ST11) and ST147 isolates from companion animals, Antimicrob Agents Chemother, 61, e02640, 10.1128/AAC.02640-16

Pulss, 2018, Multispecies and clonal dissemination of OXA-48 carbapenemase in Enterobacteriaceae from companion animals in Germany, 2009-2016, Front Microbiol, 9, 1265, 10.3389/fmicb.2018.01265

Stolle, 2013, Emergence of OXA-48 carbapenemase-producing Escherichia coli and Klebsiella pneumoniae in dogs, J Antimicrob Chemother, 68, 2802, 10.1093/jac/dkt259

Xia, 2017, Clonal spread of 16S rRNA methyltransferase-producing Klebsiella pneumoniae ST37 with high prevalence of ESBLs from companion animals in China, Front Microbiol, 8, 529, 10.3389/fmicb.2017.00529

Baraniak, 2013, Comparative population analysis of Klebsiella pneumoniae strains with extended-spectrum β-lactamases colonizing patients in rehabilitation centers in four countries, Antimicrob Agents Chemother, 57, 1992, 10.1128/AAC.02571-12

Mshana, 2013, Predominance of Klebsiella pneumoniae ST14 carrying CTX-M-15 causing neonatal sepsis in Tanzania, BMC Infect Dis, 13, 466, 10.1186/1471-2334-13-466

Garcia-Fulgueiras, 2017, Allodemic distribution of plasmids co-harbouring blaCTX-M-15/aac(6')-Ib-cr/qnrB in Klebsiella pneumoniae is the main source of extended-spectrum β-lactamases in Uruguay's paediatric hospital, J Glob Antimicrob Resist, 9, 68, 10.1016/j.jgar.2017.01.008

Gupta, 2011, European Society for Microbiology and Infectious Diseases. International clinical practice guidelines for the treatment of acute uncomplicated cystitis and pyelonephritis in women: a 2010 update by the Infectious Diseases Society of America and the European Society for Microbiology and Infectious Diseases, Clin Infect Dis, 52, e103, 10.1093/cid/ciq257

Linhares, 2013, Frequency and antimicrobial resistance patterns of bacteria implicated in community urinary tract infections: a ten-year surveillance study (2000–2009), BMC Infect Dis, 13, 19, 10.1186/1471-2334-13-19

Schroll, 2010, Role of type 1 and type 3 fimbriae in Klebsiella pneumoniae biofilm formation, BMC Microbiol, 10, 179, 10.1186/1471-2180-10-179

Brumbaugh, 2015, Blocking yersiniabactin import attenuates extraintestinal pathogenic Escherichia coli in cystitis and pyelonephritis and represents a novel target to prevent urinary tract infection, Infect Immun, 83, 1443, 10.1128/IAI.02904-14

Navon-Venezia, 2017, Klebsiella pneumoniae: a major worldwide source and shuttle for antibiotic resistance, FEMS Microbiol Rev, 41, 252, 10.1093/femsre/fux013