Klebsiella pneumoniae causing urinary tract infections in companion animals and humans: population structure, antimicrobial resistance and virulence genes
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Flores-Mireles, 2015, Urinary tract infections: epidemiology, mechanisms of infection and treatment options, Nat Rev Microbiol, 13, 269, 10.1038/nrmicro3432
Weese, 2011, Antimicrobial use guidelines for treatment of urinary tract disease in dogs and cats: Antimicrobial Guidelines Working Group of the International Society for Companion Animal Infectious Diseases, Vet Med Int, 2011, 263768., 10.4061/2011/263768
Marques, 2018, Increase in antimicrobial resistance and emergence of major international high-risk clonal lineages in dogs and cats with urinary tract infection: 16 year retrospective study, J Antimicrob Chemother, 73, 377, 10.1093/jac/dkx401
2017
2017
Pomba, 2016, Public health risk of antimicrobial resistance transfer from companion animals, J Antimicrob Chemother, 72, 957
Ewers, 2014, Clonal spread of highly successful ST15-CTX-M-15 Klebsiella pneumoniae in companion animals and horses, J Antimicrob Chemother, 69, 2676, 10.1093/jac/dku217
Harada, 2016, Phenotypic and molecular characterization of antimicrobial resistance in Klebsiella spp. isolates from companion animals in Japan: clonal dissemination of multidrug-resistant extended-spectrum β-lactamase-producing Klebsiella pneumoniae, Front Microbiol, 7, 1021, 10.3389/fmicb.2016.01021
Hidalgo, 2013, Klebsiella pneumoniae sequence type 11 from companion animals bearing ArmA methyltransferase, DHA-1 β-lactamase, and QnrB4, Antimicrob Agents Chemother, 57, 4532, 10.1128/AAC.00491-13
Donati, 2014, Extended-spectrum-β-lactamases, AmpC β-lactamases and plasmid mediated quinolone resistance in Klebsiella spp. from companion animals in Italy, PLoS One, 9, e90564, 10.1371/journal.pone.0090564
Wohlwend, 2015, Third-generation-cephalosporin-resistant Klebsiella pneumoniae isolates from humans and companion animals in Switzerland: spread of a DHA-producing sequence type 11 clone in a veterinary setting, Antimicrob Agents Chemother, 59, 2949, 10.1128/AAC.04408-14
Kuan, 2016, Extended-spectrum β-lactamase producing Escherichia coli and Klebsiella pneumoniae isolates from the urine of dogs and cats suspected of urinary tract infection in a veterinary teaching hospital, Taiwan Vet J, 42, 143, 10.1142/S1682648515500274
Maeyama, 2018, Prevalence of ESBL/AmpC genes and specific clones among the third-generation cephalosporin-resistant Enterobacteriaceae from canine and feline clinical specimens in Japan, Vet Microbiol, 216, 183, 10.1016/j.vetmic.2018.02.020
Zogg, 2018, High prevalence of extended-spectrum β-lactamase producing Enterobacteriaceae among clinical isolates from cats and dogs admitted to a veterinary hospital in Switzerland, Front Vet Sci, 5, 62, 10.3389/fvets.2018.00062
Holt, 2015, Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health, Proc Natl Acad Sci USA, 112, E3574, 10.1073/pnas.1501049112
Stahlhut, 2009, Population variability of the FimH Type 1 fimbrial adhesin in Klebsiella pneumoniae, J Bacteriol, 191, 1941, 10.1128/JB.00601-08
Podschun, 1993, Serotypes, hemagglutinins, siderophore synthesis, and serum resistance of Klebsiella isolates causing human urinary tract infections, J Infect Dis, 168, 1415, 10.1093/infdis/168.6.1415
El Fertas-Aissani, 2013, Virulence profiles and antibiotic susceptibility patterns of Klebsiella pneumoniae strains isolated from different clinical specimens, Pathol Biol, 61, 209, 10.1016/j.patbio.2012.10.004
Ranjbar, 2016, Distribution of virulence genes and genotyping of CTX-M-15-producing Klebsiella pneumoniae isolated from patients with community-acquired urinary tract infection (CA-UTI), Microb Pathog, 100, 244, 10.1016/j.micpath.2016.10.002
Wasfi, 2016, Molecular typing and virulence analysis of multidrug resistant Klebsiella pneumoniae clinical isolates recovered from Egyptian hospitals, Sci Rep, 6, 38929, 10.1038/srep38929
Kovtunovych, 2003, A PCR-mediated method for discrimination of Klebsiella oxytoca between closely related bacteria in environmental and clinical specimens, Biopolym Cell, 19, 520, 10.7124/bc.00067D
Padmavathy, 2012, Rapid and sensitive detection of major uropathogens in a single-pot multiplex PCR assay, Curr Microbiol, 65, 44, 10.1007/s00284-012-0126-3
2013, Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated from Animals—Fourth Edition: Approved Standard VET01-A4
2013, Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated from Animals—Second Informational Supplement VET01-S2
2018, Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated from Animals—Fourth Edition: VET08
2010, Comité de l’antibiogramme de la Société Française de Microbiologie: Recommandations 2010
2017, Performance Standards for Antimicrobial Susceptibility Testing—Twenty-Seventh Edition. Approved Standard M100-S27
Magiorakos, 2012, Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance, Clin Microbiol Infect, 18, 268, 10.1111/j.1469-0691.2011.03570.x
Pomba, 2006, Improved multiplex PCR method for the rapid detection of β-lactamase genes in Escherichia coli of animal origin, Diagn Microbiol Infect Dis, 56, 103, 10.1016/j.diagmicrobio.2006.03.005
Pérez-Pérez, 2002, Detection of plasmid-mediated AmpC β-lactamase genes in clinical isolates by using multiplex PCR, J Clin Microbiol, 40, 2153, 10.1128/JCM.40.6.2153-2162.2002
Guessennd, 2008, Résistance aux quinolones de type qnr chez les entérobactéries productrices de bêta-lactamases à spectre élargi à Abidjan en Côte d’Ivoire, Pathol Biol (Paris), 56, 439, 10.1016/j.patbio.2008.07.025
Edelstein, 2003, Prevalence and molecular epidemiology of CTX-M extended-spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae in Russian hospitals, Antimicrob Agents Chemother, 47, 3724, 10.1128/AAC.47.12.3724-3732.2003
Gonullu, 2008, Dissemination of CTX-M-15 β-lactamase genes carried on Inc FI and FII plasmids among clinical isolates of Escherichia coli in a University Hospital in Istanbul, Turkey, J Clin Microbiol, 46, 1110, 10.1128/JCM.01974-07
Frana, 2001, Relative distribution and conservation of genes encoding aminoglycoside-modifying enzymes in Salmonella enterica serotype Typhimurium phage type DT104, Appl Environ Microbiol, 67, 445, 10.1128/AEM.67.1.445-448.2001
Sáenz, 2004, Mechanisms of resistance in multiple-antibiotic-resistant Escherichia coli strains of human, animal, and food origins, Antimicrob Agents Chemother, 48, 3996, 10.1128/AAC.48.10.3996-4001.2004
Robicsek, 2006, Fluoroquinolone-modifying enzyme: a new adaptation of a common aminoglycoside acetyltransferase, Nat Med, 12, 83, 10.1038/nm1347
Guardabassi, 2000, Distribution and in-vitro transfer of tetracycline resistance determinants in clinical and aquatic Acinetobacter strains, J Med Microbiol, 49, 929, 10.1099/0022-1317-49-10-929
Robicsek, 2006, qnr prevalence in ceftazidime-resistant Enterobacteriaceae isolates from the United States, Antimicrob Agents Chemother, 50, 2872, 10.1128/AAC.01647-05
Cavaco, 2009, qnrD, a novel gene conferring transferable quinolone resistance in Salmonella enterica serovar Kentucky and Bovismorbificans strains of human origin, Antimicrob Agents Chemother, 53, 603, 10.1128/AAC.00997-08
Wang, 2009, New plasmid-mediated quinolone resistance gene, qnrC, found in a clinical isolate of Proteus mirabilis, Antimicrob Agents Chemother, 53, 1892, 10.1128/AAC.01400-08
Guerra, 2001, Multidrug resistance is mediated by large plasmids carrying a Class 1 integron in the emergent Salmonella enterica serotype [4,5,12:i:−], Antimicrob Agents Chemother, 45, 1305, 10.1128/AAC.45.4.1305-1308.2001
Navia, 2003, Detection of dihydrofolate reductase genes by PCR and RFLP, Diagn Microbiol Infect Dis, 46, 295, 10.1016/S0732-8893(03)00062-2
Maynard, 2003, Antimicrobial resistance genes in enterotoxigenic Escherichia coli O149:K91 isolates obtained over a 23-year period from pigs, Antimicrob Agents Chemother, 47, 3214, 10.1128/AAC.47.10.3214-3221.2003
Perreten, 2003, A new sulfonamide resistance gene (sul3) in Escherichia coli is widespread in the pig population of Switzerland, Antimicrob Agents Chemother, 47, 1169, 10.1128/AAC.47.3.1169-1172.2003
Kim, 2009, oqxAB encoding a multidrug efflux pump in human clinical isolates of Enterobacteriaceae, Antimicrob Agents Chemother, 53, 3582, 10.1128/AAC.01574-08
Lee, 2007, Collateral damage of flomoxef therapy: in vivo development of porin deficiency and acquisition of blaDHA-1 leading to ertapenem resistance in a clinical isolate of Klebsiella pneumoniae producing CTX-M-3 and SHV-5 β-lactamases, J Antimicrob Chemother, 60, 410, 10.1093/jac/dkm215
Compain, 2014, Multiplex PCR for detection of seven virulence factors and K1/K2 capsular serotypes of Klebsiella pneumoniae, J Clin Microbiol, 52, 4377, 10.1128/JCM.02316-14
Johnson, 2000, Molecular epidemiological and phylogenetic associations of two novel putative virulence genes, iha and iroNE. coli, among Escherichia coli isolates from patients with urosepsis, Infect Immun, 68, 3040, 10.1128/IAI.68.5.3040-3047.2000
Johnson, 2000, Extended virulence genotypes of Escherichia coli strains from patients with urosepsis in relation to phylogeny and host compromise, J Infect Dis, 181, 261, 10.1086/315217
Schubert, 2000, High-pathogenicity island of Yersinia pestis in Enterobacteriaceae isolated from blood cultures and urine samples: prevalence and functional expression, J Infect Dis, 182, 1268, 10.1086/315831
Yamamoto, 1995, Detection of urovirulence factors in Escherichia coli by multiplex polymerase chain reaction, FEMS Immunol Med Microbiol, 12, 85, 10.1111/j.1574-695X.1995.tb00179.x
Rodrigues, 2016, KPC-3-producing Klebsiella pneumoniae in Portugal linked to previously circulating non-CG258 lineages and uncommon genetic platforms (Tn4401d-IncFIA and Tn4401d-IncN), Front Microbiol, 7, 1000, 10.3389/fmicb.2016.01000
Kaase, 2014, Fosfomycin susceptibility in carbapenem-resistant Enterobacteriaceae from Germany, J Clin Microbiol, 52, 1893, 10.1128/JCM.03484-13
Rodrigues, 2014, Expansion of ESBL-producing Klebsiella pneumoniae in hospitalized patients: a successful story of international clones (ST15, ST147, ST336) and epidemic plasmids (IncR, IncFIIK), Int J Med Microbiol, 304, 1100, 10.1016/j.ijmm.2014.08.003
Machado, 2006, Dissemination in Portugal of CTX-M-15-, OXA-1-, and TEM-1-producing Enterobacteriaceae strains containing the aac(6')-Ib-cr gene, which encodes an aminoglycoside- and fluoroquinolone-modifying enzyme, Antimicrob Agents Chemother, 50, 3220, 10.1128/AAC.00473-06
Vubil, 2017, Outbreak of KPC-3-producing ST15 and ST348 Klebsiella pneumoniae in a Portuguese hospital, Epidemiol Infect, 145, 595, 10.1017/S0950268816002442
Manageiro, 2015, Predominance of KPC-3 in a survey for carbapenemase-producing Enterobacteriaceae in Portugal, Antimicrob Agents Chemother, 59, 3588, 10.1128/AAC.05065-14
Ovejero, 2017, Highly tigecycline-resistant Klebsiella pneumoniae sequence type 11 (ST11) and ST147 isolates from companion animals, Antimicrob Agents Chemother, 61, e02640, 10.1128/AAC.02640-16
Pulss, 2018, Multispecies and clonal dissemination of OXA-48 carbapenemase in Enterobacteriaceae from companion animals in Germany, 2009-2016, Front Microbiol, 9, 1265, 10.3389/fmicb.2018.01265
Stolle, 2013, Emergence of OXA-48 carbapenemase-producing Escherichia coli and Klebsiella pneumoniae in dogs, J Antimicrob Chemother, 68, 2802, 10.1093/jac/dkt259
Xia, 2017, Clonal spread of 16S rRNA methyltransferase-producing Klebsiella pneumoniae ST37 with high prevalence of ESBLs from companion animals in China, Front Microbiol, 8, 529, 10.3389/fmicb.2017.00529
Baraniak, 2013, Comparative population analysis of Klebsiella pneumoniae strains with extended-spectrum β-lactamases colonizing patients in rehabilitation centers in four countries, Antimicrob Agents Chemother, 57, 1992, 10.1128/AAC.02571-12
Mshana, 2013, Predominance of Klebsiella pneumoniae ST14 carrying CTX-M-15 causing neonatal sepsis in Tanzania, BMC Infect Dis, 13, 466, 10.1186/1471-2334-13-466
Garcia-Fulgueiras, 2017, Allodemic distribution of plasmids co-harbouring blaCTX-M-15/aac(6')-Ib-cr/qnrB in Klebsiella pneumoniae is the main source of extended-spectrum β-lactamases in Uruguay's paediatric hospital, J Glob Antimicrob Resist, 9, 68, 10.1016/j.jgar.2017.01.008
Gupta, 2011, European Society for Microbiology and Infectious Diseases. International clinical practice guidelines for the treatment of acute uncomplicated cystitis and pyelonephritis in women: a 2010 update by the Infectious Diseases Society of America and the European Society for Microbiology and Infectious Diseases, Clin Infect Dis, 52, e103, 10.1093/cid/ciq257
Linhares, 2013, Frequency and antimicrobial resistance patterns of bacteria implicated in community urinary tract infections: a ten-year surveillance study (2000–2009), BMC Infect Dis, 13, 19, 10.1186/1471-2334-13-19
Schroll, 2010, Role of type 1 and type 3 fimbriae in Klebsiella pneumoniae biofilm formation, BMC Microbiol, 10, 179, 10.1186/1471-2180-10-179
Brumbaugh, 2015, Blocking yersiniabactin import attenuates extraintestinal pathogenic Escherichia coli in cystitis and pyelonephritis and represents a novel target to prevent urinary tract infection, Infect Immun, 83, 1443, 10.1128/IAI.02904-14