Escherichia coli: an old friend with new tidings

Oxford University Press (OUP) - Tập 40 Số 4 - Trang 437-463 - 2016
Jordi Vilà1,2,3, Emma Sáez-López2, James R. Johnson4, Ute Römling5, Ulrich Dobrindt6, Rafael Cantón7,3, Christian G. Giske5, Thierry Naas8, Alessandra Carattoli9, Margarita Martínez-Medina10, Jordi Bosch1,2, Pilar Retamar11, Jesús Rodríguez‐Baño3,11, Fernando Baquero7, Sara M. Soto2
1Department of Clinical Microbiology, Hospital Clinic, Universitat de Barcelona, 08036 Barcelona, Spain
2ISGlobal, Barcelona Ctr. Int. Health Res. (CRESIB), Hospital Clínic-Universitat de Barcelona, 08036 Barcelona, Spain
3Spanish Network for Research in Infectious Diseases (REIPI), Instituto de Salud Carlos III, 28220 Madrid, Spain
4VA Medical Center, Minneapolis, MN, USA, and University of Minnesota, Minneapolis, MN55417, USA
5Karolinska Institute, 17177 Stockholm, Sweden
6Institute of Hygiene, University of Münster, 48149 Münster, Germany
7Servicio de Microbiología, Hospital Universitario Ramón y Cajal and Instituto de Investigación Sanitaria (IRYCIS), E-28034 Madrid, Spain
8Hôpital de Bicêtre, Université Paris Sud, Le Kremlin-Bicêtre, 94270, France
9Department of Infectious, Parasitic and Immune-mediated Diseases, Istituto Superiore di Sanità, 00161 Rome, Italy
10Laboratory of Molecular Microbiology, Department of Biology, University of Girona, 17004 Girona, Spain
11Unidad Clínica de Enfermedades Infecciosas, Microbiología y Medicina Preventiva, Hospitales Universitarios Virgen Macarena y Virgen del Rocío, Departamento de Medicina, Universidad de Sevilla, 41071 Seville, Spain

Tóm tắt

Từ khóa


Tài liệu tham khảo

10.1146/annurev.mi.40.100186.001153

Achtman, 1983, Six widespread bacterial clones among Escherichia coli K1 isolates, Infect Immun, 39, 315, 10.1128/IAI.39.1.315-335.1983

10.1038/nrmicro1889

10.1179/joc.2010.22.Supplement-1.25

10.1126/science.1084550

10.1007/s00253-013-4875-0

10.1128/JB.00375-06

10.1093/jac/dkr317

10.1016/j.ijid.2014.05.012

10.1128/AAC.02824-14

Baquero, 2013, Bloody coli: a gene cocktail in Escherichia coli O104:H4, MBio, 4, e00066, 10.1128/mBio.00066-13

10.1172/JCI30504

10.1016/j.clinthera.2008.03.013

10.1038/ismej.2007.52

10.1086/589245

10.1111/j.1365-2958.2010.07499.x

10.1542/peds.2007-2171

10.2217/fmb.14.66

Blum, 1994, Excision of large DNA regions termed pathogenicity islands from tRNA-specific loci in the chromosome of an Escherichia coli wild-type pathogen, Infect Immun, 62, 606, 10.1128/IAI.62.2.606-614.1994

Bogaerts, 2011, On the detection of plasmidic AmpC in Enterobacteriaceae other than Escherichia spp. and Klebsiella spp, Int J Antimicrob Ag, 37, 275, 10.1016/j.ijantimicag.2010.11.025

10.1099/jmm.0.46064-0

10.1016/j.ijmm.2005.07.011

10.1086/375347

10.1371/journal.pone.0034752

10.1111/1469-0691.12192

10.1111/j.1462-5822.2005.00639.x

10.1128/JB.00233-07

10.1111/1469-0691.12413

10.1073/pnas.0603038103

10.1159/000235766

10.1128/AAC.00912-13

10.1111/j.1469-0691.2012.03821.x

10.1016/j.mib.2006.08.011

10.1093/jac/dkq269

10.1128/AAC.01707-08

10.1016/j.ijmm.2013.02.001

10.1084/jem.20090741

10.1128/AAC.05116-11

10.2174/092986709787581879

Chargui, 2012, Subversion of autophagy in adherent invasive Escherichia coli-infected neutrophils induces inflammation and cell death, PLoS One, 7, 14, 10.1371/journal.pone.0051727

10.1128/JB.01079-12

10.1172/JCI44632

10.1016/j.meegid.2012.01.005

10.1074/jbc.M702800200

10.1128/JB.05374-11

10.3201/eid1402.070350

10.1146/annurev.mi.41.100187.002251

10.1007/s12223-009-0012-y

10.1016/j.ijantimicag.2009.10.021

10.3201/eid1609.091389

10.1016/j.jinf.2015.09.009

10.1111/j.1440-1754.2004.00507.x

10.1016/j.ijmm.2013.02.008

10.1053/j.gastro.2004.04.061

10.1159/000014208

10.1016/j.ajic.2015.05.021

10.1093/jac/dkt027

10.1002/ibd.21787

10.1371/journal.pone.0079005

10.1128/IAI.70.11.6365-6372.2002

10.1038/nrmicro884

10.1128/AAC.02190-12

10.1002/ibd.22971

10.1093/jac/dkt433

10.1093/jac/dkv308

10.1371/journal.ppat.1003141

10.1371/journal.pone.0068386

10.1007/s10096-013-1869-x

10.1128/IAI.00904-15

10.1007/s00239-003-2460-3

European Centre for Disease Prevention and Control. Annual Report of the European Antimicrobial Resistance Surveillance Network (EARS-Net). Stockholm: ECDC; 2015. Antimicrobial resistance surveillance in Europe 2014.

10.1111/j.1751-7915.2008.00063.x

10.3201/eid2007.121004

10.1093/cid/10.Supplement_2.S274

10.1038/nrmicro3432

10.1111/j.1462-5822.2006.00794.x

10.1038/35086581

10.2807/1560-7917.ES2013.18.28.20525

González-Padilla, 2014, Gentamicin therapy for sepsis due to carbapenem-resistant and colistin-resistant Klebsiella pneumoniae, J Antimicrob Chemoth, 70, 905, 10.1093/jac/dku432

10.1067/mob.2000.106180

10.1111/j.1574-6968.2010.02160.x

10.1159/000337062

10.1093/cid/ciq257

10.1093/embo-reports/kve097

10.1126/science.1086802

10.1146/annurev.micro.54.1.641

Hacker J Kaper JB , editors. Pathogenicity Islands and the Evolution of Pathogenic Microbes. Berlin: Springer; 2002.

Hagberg, 1983, Ascending, unobstructed urinary tract infection in mice caused by pyelonephritogenic Escherichia coli of human origin, Infect Immun, 40, 273, 10.1128/IAI.40.1.273-283.1983

10.1007/978-3-642-28951-4_3

10.1016/j.ijantimicag.2012.10.014

10.1111/j.1469-0691.2011.03550.x

10.1007/s10096-013-1871-3

Hengge, 2015, Systematic Nomenclature for GGDEF and EAL Domain-Containing Cyclic Di-GMP Turnover Proteins of Escherichia coli, J Bacteriol, 198, 7, 10.1128/JB.00424-15

Herías, 1995, Role of Escherichia coli P fimbriae in intestinal colonization in gnotobiotic rats, Infect Immun, 63, 4781, 10.1128/IAI.63.12.4781-4789.1995

Herías, 1997, Escherichia coli K5 capsule expression enhances colonization of the large intestine in the gnotobiotic rat, Infect Immun, 65, 531, 10.1128/IAI.65.2.531-536.1997

10.1111/j.1365-2958.2006.05255.x

10.3389/fmicb.2013.00242

10.1002/mnfr.200700038

10.1016/j.vaccine.2009.04.053

10.1128/JB.01920-07

10.1093/jac/dkt404

Jepson, 2012, Cranberries for preventing urinary tract infections, Cochrane Database Syst Rev, 10, CD001321

Johnson, 1998, papG alleles among Escherichia coli strains causing urosepsis: associations with other bacterial characteristics and host compromise, Infect Immun, 66, 4568, 10.1128/IAI.66.9.4568-4571.1998

10.1128/JCM.00980-08

10.1086/507305

10.1086/317656

10.1016/S0140-6736(02)09264-4

10.1067/mlc.2002.121550

10.1016/j.ijmm.2005.07.005

10.1086/669858

10.1111/j.1479-828X.2004.00304.x

10.1128/JCM.03484-13

10.1371/journal.ppat.1001010

10.1038/nrmicro818

10.1093/jac/dkl309

Kazmierczak KM Rabine S Hackel M . Multi-year, multi-national survey of the incidence and global distribution of metallo-β-lactamase-producing Enterobacteriaceae and P. aeruginosa . Antimicrob Agents Ch 2015:AAC.02379-15.

10.1111/crj.12028

10.1074/jbc.M112224200

10.1038/nrn1103

10.1097/QCO.0b013e3283521eb0

Kim, 1997, The plasmid R64 thin pilus identified as a type IV pilus, J Bacteriol, 179, 3594, 10.1128/jb.179.11.3594-3603.1997

10.1111/j.1365-2672.2006.03019.x

10.1016/j.ijmm.2011.09.006

10.1111/j.1462-2920.2010.02202.x

10.1111/j.1462-2920.2009.02032.x

10.1111/j.1462-5822.2009.01381.x

10.1128/AEM.01144-08

Lawley T Wilkins BM Frost LS . Bacterial conjugation in Gram-negative bacteria. In: Funnel P , editor. Plasmid Biology. Washington, D.C.: ASM Press; 2004. p. 203-26.

10.1016/S1473-3099(13)70318-9

10.1111/j.1469-0691.2011.03703.x

10.1007/82_2012_303

10.1111/j.1365-2958.2004.04073.x

10.1111/j.1469-0691.2011.03497.x

10.1002/(SICI)1098-0997(1999)7:4<210::AID-IDOG10>3.0.CO;2-8

10.1371/journal.pone.0086618

10.1038/nm1145

10.1093/cid/cis1043

10.1016/j.pedneo.2011.02.001

10.1128/JB.01219-07

10.1128/AEM.02228-08

10.1111/j.1469-0691.2009.02893.x

10.1080/08035250410025302

10.1016/j.ijmm.2014.02.009

10.1053/j.gastro.2013.05.017

10.1016/bs.ampbs.2014.08.006

10.1056/NEJM199605163342015

10.1002/cbic.200800041

10.1111/j.1469-0691.2011.03570.x

10.1097/01.mib.0000235828.09305.0c

10.1002/ibd.20860

10.1136/gutjnl-2012-304119

Martinez-Medina, 2014, Escherichia coli in chronic inflammatory bowel diseases: An update on adherent invasive Escherichia coli pathogenicity, World J Gastrointest Pathophysiol, 5, 213, 10.4291/wjgp.v5.i3.213

10.1128/AEM.02614-10

10.1128/JCM.01484-09

10.1186/1471-2180-9-202

10.1016/bs.aambs.2014.09.002

10.1128/CMR.00116-14

10.1053/j.gastro.2008.12.072

10.1128/JB.186.10.3086-3096.2004

10.1016/j.micinf.2005.12.027

10.1128/AAC.00665-10

10.1016/j.ijantimicag.2009.01.017

10.1128/AAC.01014-08

10.1128/AAC.00638-12

10.1128/JCM.00548-06

10.1111/j.1365-2958.2009.06995.x

10.1097/01.MIB.0000159663.62651.4f

10.1128/AAC.00719-11

10.1128/AAC.01451-07

10.1007/s10156-006-0483-6

10.1111/j.1469-0691.2009.02861.x

10.1186/1471-2164-11-667

10.1111/1469-0691.12091

10.1002/ibd.21899

Nguyen, 2013, Crohn's Disease-associated adherent invasive Escherichia coli affect levels of microRNAs in intestinal epithelial cells to reduce autophagy, Gastroenterology, 19, 01495

10.1016/j.ijantimicag.2011.08.018

10.1093/jac/dku030

10.1111/j.1469-0691.2007.01930.x

10.1016/S1473-3099(09)70054-4

10.3201/eid1710.110655

10.1017/S0950268801005118

10.1093/emboj/19.24.6637

Oethinger, 1998, Overexpression of the marA or soxS regularoy genes in clinical topoisomerase mutants of Escherichia coli, Antimicrob Agents Ch, 42, 2089, 10.1128/AAC.42.8.2089

10.1093/cid/ciu514

10.1128/AAC.03679-14

10.1128/AEM.00974-09

Parsot C Sansonetti P . Evolution of Shigella and enteroinvasive E. coli . In: Baquero F Nombela C Cassell GH , editors. Evolutionary Biology of Bacterial and Fungal Pathogens. Washington, D.C.: ASM Press; 2008. p. 421-31.

10.1093/jac/dku168

10.1101/gad.289504

10.1128/JCM.40.6.2153-2162.2002

10.1186/1471-230X-13-13

10.1128/AAC.05620-11

10.1093/jac/dks121

10.1128/AAC.01344-13

10.2807/1560-7917.ES2013.18.31.20549

Povolotsky, 2015, Genome-Based Comparison of Cyclic Di-GMP signaling in pathogenic and commensal Escherichia coli strains, J Bacteriol, 198, 111, 10.1128/JB.00520-15

10.1016/j.ijantimicag.2006.08.039

10.1128/IAI.00522-09

Rajakumar, 1997, Use of a novel approach, termed island probing, identifies the Shigella flexneri she pathogenicity island which encodes a homolog of the immunoglobulin A protease-like family of proteins, Infect Immun, 65, 4606, 10.1128/IAI.65.11.4606-4614.1997

10.1128/IAI.01396-12

Raymond, 2008, Evidence for transmission of Escherichia coli from mother to child in late-onset neonatal infection, Pediatr Infect Dis J, 27, 186, 10.1097/INF.0b013e31815b1b03

10.1073/pnas.0704104104

10.1016/j.diagmicrobio.2014.01.017

10.1128/AAC.00135-13

10.1093/cid/cir790

10.1586/14787210.6.5.671

10.1007/s10156-010-0120-2

10.1136/gut.2010.207456

10.1016/0002-9378(88)90216-5

10.1007/s00018-005-4557-x

10.1111/j.1462-2920.2011.02617.x

10.1128/MMBR.00043-12

10.1038/325279a0

10.1016/j.vetmic.2014.01.017

10.1093/jac/39.6.839

10.1086/315418

10.1016/S1286-4579(03)00049-2

10.1016/j.diagmicrobio.2013.11.025

10.1111/j.1462-2920.2008.01824.x

10.1186/1471-230X-8-50

10.1086/425984

10.1038/ncpgasthep0528

10.1002/ibd.20818

10.1038/nrmicro2203

10.1128/CMR.17.1.14-56.2004

10.1186/1471-2180-11-210

10.1097/01.inf.0000239267.42561.06

10.1371/journal.ppat.1000257

10.1046/j.1365-2958.2003.03870.x

10.1016/j.jpeds.2010.02.046

10.1038/jp.2011.40

10.1128/AAC.00971-12

10.1016/S0147-619X(02)00107-5

10.1111/j.1365-2958.2004.04206.x

10.1371/journal.pone.0016387

10.1371/journal.pone.0001800

10.1099/mic.0.024257-0

10.1016/j.mib.2011.12.008

10.1038/nrmicro1232

10.1128/JCM.01682-07

10.1007/s10096-011-1258-2

10.1128/JB.02254-12

10.1093/infdis/jiv422

10.1016/S0147-619X(03)00016-7

10.1038/emboj.2012.315

10.1056/NEJMoa012657

10.1542/peds.2010-2217

10.1128/microbiolspec.UTI-0015-2012

Swenson, 1996, Two pathogenicity islands in uropathogenic Escherichia coli J96: cosmid cloning and sample sequencing, Infect Immun, 64, 3736, 10.1128/IAI.64.9.3736-3743.1996

10.1016/S0022-5193(05)80767-2

10.1016/S1473-3099(11)70177-3

10.1046/j.1365-2958.2002.02968.x

10.1038/nrmicro2298

10.1097/INF.0b013e3181958780

10.1016/j.ijantimicag.2011.12.006

10.1038/nrmicro1234

10.1111/j.1365-2958.2004.04155.x

10.1371/journal.pgen.1000344

10.1007/978-1-61779-361-5_4

10.1128/AAC.00009-11

10.1093/cid/cis588

10.1371/journal.pone.0105395

10.1111/1469-0691.12697

10.1128/CMR.05035-11

10.1099/mic.0.066118-0

10.1016/S0022-3476(05)83480-8

10.1159/000226604

10.1093/jac/dks301

10.1093/jac/dkn249

10.1186/1471-2164-12-316

10.1128/CMR.masthead.29-1

Vila J. Fluoroquinolone resistance. In: White DG Alekshun MN McDermot PF , editors. Frontiers in Antimicrobial Resistance: a Tribute to Stuart B. Levy. Washington DC: ASM Press; 2005. p. 41-52.

Vila, 2011, Efflux pumps as an important mechanisms of quinolone resistance, Adv Enz Rel Areas Mol Biol, 77, 165

Vila, 1996, Detection of mutations in the parC gene of quinolone-resistant isolates of Escherichia coli, Antimicrob Agents Ch, 40, 491, 10.1128/AAC.40.2.491

10.1128/AAC.38.10.2477

10.1016/j.drup.2012.05.001

10.1016/S1473-3099(11)70059-7

10.1007/s00284-009-9563-z

10.1007/s00018-006-6222-4

10.1128/JCM.41.5.1929-1935.2003

10.1128/AAC.45.5.1550-1552.2001

10.1128/AAC.49.10.4390-4392.2005

10.1111/j.1365-2958.2004.04421.x

10.1002/ibd.20783

10.1128/AAC.00688-09

10.1111/j.1574-6976.2011.00268.x

World Health Organization. Antimicrobial Resistance Global Report on Surveillance. 2014. http://www.who.int/drugresistance/documents/surveillancereport/en/ (April 2014, date last accessed).

Wu, 2012, Ertapenem in the treatment of bacteremia caused by extended-spectrum beta-lactamase-producing Escherichia coli: a propensity score analysis, Int J Infect Dis, 16, e47, 10.1016/j.ijid.2011.09.019

10.1016/j.femsim.2004.09.001

10.1073/pnas.1503160112

10.1016/S0022-5347(01)65154-1

10.1111/j.1469-0691.2011.03514.x

10.1016/j.meegid.2014.07.031

10.2217/fmb.15.18

10.1128/AAC.02050-13