Cladonia pyxidataandC. pocillum; genetic evidence to regard them as conspecific
Tóm tắt
Từ khóa
Tài liệu tham khảo
Ahti T. 1966. Correlation of the chemical and morphological characters inCladonia chlorophaeaand allied lichens. Ann Bot Fenn 3:380–390.
———. 2000. Cladoniaceae. Flora Neotropica Monograph 78. New York: New York Botanical Garden. 362 p.
Aptroot A, Sipman HJM, van Herk CM. 2001.Cladonia monomorpha, a neglected cup lichen from Europe. Lichenologist 33:271–283.
Beiggi S, Piercey-Normore MD. 2007. Evolution of ITS ribosomal RNA secondary structures in fungal and algal symbionts of selected species ofCladoniasect.Cladonia(Cladoniaceae, Ascomycotina). J Mol Evol 64:528–542.
Bergamini A, Stofer S, Bolliger J, Scheidegger C. 2007. Evaluating macrolichens and environmental variables as predictors of the diversity of epiphytic microlichens. Lichenologist 39:475–489.
Bingle LEH, Simpson TJ, Lazarus CM. 1999. Ketosynthase domain probes identify two subclasses of fungal polyketide synthase genes. Fungal Genet Biol 26:209–223.
Culberson CF. 1972. Improved conditions and new data for the identification of lichen products by a standardized thin-layer chromatographic method. J Chromatogr 72: 113–125.
———, Armaleo D. 1992. Induction of a complete secondary-product pathway in a cultured lichen fungus. Exp Mycol 16:52–63.
DePriest PT. 1993. Variation in theCladonia chlorophaeacomplex I: morphological and chemical variation in southern Appalachian populations. Bryologist 96:555–563.
———. 1994. Variation in theCladonia chlorophaeacomplex II: ribosomal DNA variation in a southern Appalachian population. Bryologist 97:117–126.
Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791.
Green TGA, Lange OL. 1991. Ecophysiological adaptations of the lichen generaPseudocyphellariaandStictato south temperate rainforests. Lichenologist 23:267–282.
Grube M, DePriest PT, Gargas A, Hafellner J. 1995. DNA isolation from lichen ascomata. Mycol Res 99:1321–1324.
Hawksworth DL. 1976. Ecological factors and species delimitation in the lichens. In: Heywood VH, ed. Taxonomy and ecology. New York: Academic Press. p 31–69.
Helms G, Friedl T, Rambold G, Mayrhofer H. 2001. Identification of photobionts from the lichen family Physciaceae using algal-specific ITS rDNA sequencing. Lichenologist 33:73–86.
Huelsenbeck JP, Ronquist F, Nielsen R, Bollback JP. 2001. Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294:2310–2314.
Jones JB Jr. 2001. Laboratory guide for conducting soil tests and plant analysis. New York: CRC Press. 256 p.
Leuckert C, Ahmadjian V, Culberson CF, Johnson A. 1990. Xanthones and depsidones of the lichenLecanora dispersain nature and of its mycobiont in culture. Mycologia 82:370–378.
Miadlikowska J, Lutzoni F. 2000. Phylogenetic revision of the genusPeltigera(lichen-forming ascomycetes) based on morphological, chemical and large subunit nuclear ribosomal DNA data. Int J Plant Sci 161:925–958.
O’Brien HE, Miadlikowska J, Lutzoni F. 2009. Assessing reproductive isolation in highly diverse communities of the lichen-forming fungal genusPeltigera. Evolution 63: 2076–2086.
Ohmura Y, Kawachi M, Kasai F, Watanabe MM. 2006. Genetic combinations of symbionts in a vegetatively reproducing lichen,Parmotrema tinctorum, based on ITS rDNA sequences. Bryologist 109:43–59.
Osyczka P. 2006. The lichen genus Cladonia (Cladoniaceae, lichenized Ascomycota) from Spitsbergen. Pol Polar Res 27:207–242.
Page RDM. 1996. TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357–358.
Piercey-Normore MD. 2004. Selection of algal partners by lichen fungi and patterns of variation for three species ofCladonia. Can J Bot 82:947–961.
———. 2006. The lichen-forming ascomyceteEvernia mesomorphaassociates with multiple genotypes ofTrebouxia jamesii. New Phytol 169:331–344.
Posada D, Coppins BJ, Hawksworth DL, James PW, Moore DM. 1992. The lichen flora of Great Britain and Ireland. London: Natural History MuseumPUBLICations & British Lichen Society. 710 p.
———, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817–818.
Rambaut A. 2001. Se-Al (sequence alignment editor). Version 1. Oxford, UK: Department Zoology, Univ Oxford.
Richardson DHS. 1991. Lichens as biological indicators—recent developments. In: Jeffrey DW, Madden B, eds. Bioindicators and environmental management. London, San Diego: Academic Press. p 263–272.
———. 1992. Pollution monitoring with lichens. Naturalists’ handbooks 19, Slough. England: Richmond Publishing Co. Ltd. 76 p.
Rikkinen J. 1997. Habitat shifts and morphological variation ofPseudevernia furfuraceaalong a topographical gradient. Symb Bot Ups 32:223–245.
Romeike J, Friedl T, Helms G, Ott S. 2002. Genetic diversity of algal and fungal partners in four species ofUmbilicaria(lichenized ascomycetes) along a transect of the Antarctic peninsula. Mol Biol Evol 19:1209–1217.
Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574.
Skaloud P, Peksa O. 2007. Phylogeny, morphology and taxonomic revision of the symbiotic algaAsterochloris(Trebouxiophyceae, Chlorophyta). 4th European phycological Congress, 23–27 Jul 2007. Oviedo, Spain. Poster P1Mi-16. 108 p.
Stenroos S, Hyvonen J, Myllys L, Thell A, Ahti T. 2002. Phylogeny of the genusCladonia s. lat.(Cladoniaceae, Ascomycetes) inferred from molecular, morphological and chemical data. Cladistics 18:237–278.
Stocker-Wörgötter E. 2001. Experimental lichenology and microbiology of lichens: culture experiments, secondary chemistry of cultured mycobionts, resynthesis and thallus morphogenesis. Bryologist 104:576–581.
Swofford DL. 2003. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4. Sunderland, Massachusetts: Sinauer Associates.
Thomson JW. 1967. The lichen genusCladoniain North America. Toronto, Canada: Univ Toronto Press. 172 p.
———. 1984. American Arctic Lichens 1. The Macrolichens. New York: Columbia Univ Press. 504 p.
White TJ, Bruns TD, Lee SB, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. New York: Academic Press. p 315–322.