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Dis. 13, 24–34 (2009)",{},{"id":18,"text":410,"url":18,"identifiers":411},"K.J. Henrickson, Clin. Microbiol. Rev. 16, 242–264 (2003)",{},{"id":18,"text":413,"url":18,"identifiers":414},"Z. Dinter, D. Morein, (eds.), Virus Infections in Ruminants (Elsevier Science Publishers BV, New York, 1990)",{},{"id":18,"text":416,"url":18,"identifiers":417},"J.M. Emeny, M.J. Morgan, J. Gen. Virol. 43, 247–252 (1979)",{},{"id":18,"text":419,"url":18,"identifiers":420},"J. Andrejeva, K.S. Childs, D.F. Young, T.S. Carlos, N. Stock, S. Goodbourn, R.E. Randall, Proc. Natl. Acad. Sci. U.S.A. 101, 17264–17269 (2004)",{},{"id":18,"text":422,"url":18,"identifiers":423},"L.L. Lu, M. Puri, C.M. Horvath, G.C. Sen, J. Biol. Chem. 283, 14269–14276 (2008)",{},{"id":18,"text":425,"url":18,"identifiers":426},"K.S. Childs, J. Andrejeva, R.E. Randall, S. Goodbourn, J. Virol. 83, 1465–1473 (2009)",{},{"id":18,"text":428,"url":18,"identifiers":429},"K. Childs, R. Randall, S. Goodbourn, J. 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Ben-Ishai, V. Naftali, A. Avram, S. Yatziv, J. Med. Virol. 6, 165–168 (1980)",{},{"id":18,"text":473,"url":18,"identifiers":474},"P. Boeuf, I. Vigan-Womas, D. Jublot, S. Loizon, J.C. Barale, B.D. Akanmori, O. Mercereau-Puijalon, C. Behr, BMC Immunol. 6, 5–18 (2005)",{},{"id":18,"text":476,"url":18,"identifiers":477},"R.E. Sacco, B.J. Nonnecke, M.V. Palmer, W.R. Waters, J.D. Lippolis, T.A. Reinhardt, PLoS ONE 7, e33074 (2012)",{},{"id":18,"text":479,"url":18,"identifiers":480},"A. Hinzey, J. Alexander, J. Corry, K.M. Adams, A.M. Claggett, Z.P. Traylor, I.C. Davis, J.I. Webster, Marketon. Endocrinology 152, 483–494 (2011)",{},false,{"id":483,"createTime":484,"updateTime":485,"relativeEntities":486,"slug":487,"properties":488,"entityType":127,"verifyStatus":128,"verifyTime":497,"verifyNote":130,"languages":18,"translateLanguages":18,"viewCount":19,"primaryUrl":498,"fullTextUrl":18,"authors":499,"publicationType":249,"publisherRelationship":530,"citationCount":19,"citationInfo":589,"publishDate":592,"publishYear":590,"citationAnalyzeStatus":314,"lastCitationAnalyze":593,"indexDatabases":594,"openAccess":18,"references":595,"isForceReanalyzing":481},"7323a053-04c2-470a-8045-8160ffaa9bd3","2024-02-05T18:41:51.939+00:00","2026-08-16T04:40:28.539+00:00",[],"High-levels-of-genetic-variation-within-core-Helicoverpa-armigera-nucleopolyhedrovirus-genes",{"abstract":489,"title":491,"gsPaper":493,"doi":495},{"EN":490},"It is well documented that baculovirus populations contain many genotypic variants, but little is known about the degree of genetic variation in specific baculovirus genes. Helicoverpa armigera nucleopolyhedrovirus (HearNPV) was used as a model system for studying genetic variation in nucleopolyhedrovirus genes. Next generation sequencing (NGS) was used to identify single-nucleotide polymorphisms (SNPs) within a core baculovirus gene (DNA polymerase) and two core lepidopteran-specific baculovirus genes (dbp1 and me53) in HearNPV populations. Analysis of the NGS data identified 60 SNPs within the 3063 bp DNA polymerase gene, 13 SNPs within the 972 bp dbp1 gene, and 25 SNPs within the 1080 bp me53 gene. Depending on the gene, between 31 and 35% of the SNPs were non-synonymous and may, thus, affect the biological functioning of the encoded proteins. The number and homogenous distribution of SNPs found suggest that nucleotide substitution is a major contributor to HearNPV genetic diversity. Denaturing gradient gel electrophoresis (DGGE) assays were used to provide an additional method for evaluating HearNPV genetic variation. Since each of the gene-specific DGGE assays produced unique banding profiles containing numerous bands of differing relative intensities, the DGGE experiments confirmed that there was a high degree of genetic variation in core HearNPV genes and provided information on the relative frequency distribution of genetic variants in the population. The amount of gene-specific genetic variation detected in this study significantly exceeds that reported in other HearNPV studies, suggesting that NGS and DGGE may be useful techniques for studying genetic variation in other baculoviruses.",{"EN":492},"High levels of genetic variation within core Helicoverpa armigera nucleopolyhedrovirus genes",{"VOID":494},"[\"4432897048811260781\"]",{"VOID":496},"10.1007\u002Fs11262-011-0660-2","2024-04-30T23:26:43.498+00:00","https:\u002F\u002Flink.springer.com\u002Farticle\u002F10.1007\u002Fs11262-011-0660-2",[500,517],{"id":501,"sortIndex":19,"researcher":18,"roles":502,"affiliations":503,"properties":512},"c3dcffc9-ef03-46bc-8709-bd94697ddd8b",[136],[504],{"id":505,"sortIndex":19,"affiliation":506,"properties":18},"261e1dbe-6e07-4347-b379-5b601712dfda",{"id":505,"createTime":18,"updateTime":18,"relativeEntities":507,"slug":18,"properties":508,"entityType":18,"verifyStatus":18,"verifyTime":18,"verifyNote":18,"languages":18,"translateLanguages":18,"viewCount":18,"url":18,"parentIds":511,"statistic":18},[],{"title":509},{"VI":510},"School of Molecular and Cell Biology, University of the Witwatersrand, Wits, South Africa",[],{"title":513,"gsAuthor":515},{"VI":514},"Vicky Lynne Baillie",{"VOID":516},"[\"5idLmoEAAAAJ\"]",{"id":518,"sortIndex":104,"researcher":18,"roles":519,"affiliations":520,"properties":527},"f59b568c-3950-4d2b-a2a8-bbe7c7bf4a00",[136],[521],{"id":505,"sortIndex":19,"affiliation":522,"properties":18},{"id":505,"createTime":18,"updateTime":18,"relativeEntities":523,"slug":18,"properties":524,"entityType":18,"verifyStatus":18,"verifyTime":18,"verifyNote":18,"languages":18,"translateLanguages":18,"viewCount":18,"url":18,"parentIds":526,"statistic":18},[],{"title":525},{"VI":510},[],{"title":528},{"VI":529},"Gustav Bouwer",{"url":498,"publisher":531,"properties":584},{"id":6,"createTime":7,"updateTime":8,"relativeEntities":532,"slug":10,"properties":533,"entityType":16,"verifyStatus":17,"verifyTime":18,"verifyNote":18,"languages":18,"translateLanguages":18,"viewCount":19,"subjectFields":536,"manageAffiliations":553,"indexDatabases":564,"url":18,"thumbnailPath":18,"statistic":579,"gsStatistic":18,"type":107,"analyzePriority":18},[],{"issn":534,"title":535},{"VOID":13},{"VOID":15},[537,541,545,549],{"id":22,"createTime":18,"updateTime":18,"relativeEntities":538,"label":539,"description":540,"parentId":18,"standard":18,"scholarHubFieldId":18},[],{"EN":25},{},{"id":28,"createTime":18,"updateTime":18,"relativeEntities":542,"label":543,"description":544,"parentId":18,"standard":18,"scholarHubFieldId":18},[],{"EN":31},{},{"id":34,"createTime":18,"updateTime":18,"relativeEntities":546,"label":547,"description":548,"parentId":18,"standard":18,"scholarHubFieldId":18},[],{"EN":37},{},{"id":40,"createTime":18,"updateTime":18,"relativeEntities":550,"label":551,"description":552,"parentId":18,"standard":18,"scholarHubFieldId":18},[],{"EN":43},{},[554,559],{"id":47,"createTime":18,"updateTime":18,"relativeEntities":555,"slug":18,"properties":556,"entityType":18,"verifyStatus":18,"verifyTime":18,"verifyNote":18,"languages":18,"translateLanguages":18,"viewCount":18,"url":18,"parentIds":558,"statistic":18},[],{"title":557},{"EN":51},[],{"id":54,"createTime":18,"updateTime":18,"relativeEntities":560,"slug":18,"properties":561,"entityType":18,"verifyStatus":18,"verifyTime":18,"verifyNote":18,"languages":18,"translateLanguages":18,"viewCount":18,"url":18,"parentIds":563,"statistic":18},[],{"title":562},{"EN":58},[60],[565,572],{"id":63,"indexDatabase":566,"url":74,"indexYears":75,"academicFieldIds":571,"indexDatabaseRanking":81},{"id":65,"createTime":18,"updateTime":18,"relativeEntities":567,"label":568,"description":569,"key":71,"publicationTags":570,"standard":18},[],{"EN":68,"VI":68},{"EN":68,"VI":70},[73],[77,78,79,80],{"id":83,"indexDatabase":573,"url":96,"indexYears":18,"academicFieldIds":578,"indexDatabaseRanking":18},{"id":85,"createTime":18,"updateTime":18,"relativeEntities":574,"label":575,"description":576,"key":92,"publicationTags":577,"standard":18},[],{"EN":88,"VI":88},{"EN":90,"VI":91},[94,95],[98,99],{"impactFactor":19,"impactFactorByYear":580,"i10Index":19,"i10IndexLast5Year":19,"totalPublication":102,"totalPublicationByYear":581,"totalCitation":19,"totalCitationByYear":582,"totalCitationPerPublication":19,"totalCitationPerPublicationByYear":583,"hindexLast5Year":19,"hindex":19},{},{"2002":104,"2018":104},{},{},{"pages":585,"volume":587},{"VOID":586},"149-162",{"VOID":588},"44",{"total":19,"publishYear":590,"statisticByYear":591},2011,{},"2011-09-10","2026-08-16T04:40:28.538+00:00",[81,94],[596,599,602,605,608,611,614,617,620,623,626,629,632,635,638,641,644,647,650,653,656,659,662,665,668,671,674,677,680,683,686,689,692,695,698,701,704,707,710,713,716,719,722,725,728,731,734,737,740,743,746,749,752,755,758,761,764,767,770,773,776,779,782,785,788,791,794,797,800,803],{"id":18,"text":597,"url":18,"identifiers":598},"B.A. Federici, in The Baculovirus, ed. by L.K. 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Biotechnol. 24, 680–686 (2006)",{},{"id":18,"text":735,"url":18,"identifiers":736},"W. Brockman, P. Alvarez, S. Young, M. Garber, G. Giannoukos, W.L. Lee, C. Russ, E.S. Lander, C. Nusbaum, D.B. Jaffe, Genome Res. 18, 763–770 (2008)",{},{"id":18,"text":738,"url":18,"identifiers":739},"R.M. Myers, S.G. Fischer, L.S. Lerman, T. Maniatis, Nucleic Acids Res. 13, 3131–3145 (1985)",{},{"id":18,"text":741,"url":18,"identifiers":742},"G. Muyzer, K. Smalla, Anton. Leeuw. 73, 127–141 (1998)",{},{"id":18,"text":744,"url":18,"identifiers":745},"S.J. Spatz, C.A. Rue, Virus Genes 36, 479–489 (2008)",{},{"id":18,"text":747,"url":18,"identifiers":748},"M. Iacono, L. Villa, D. Fortini, R. Bordoni, F. Imperi, R.J.P. Bonnal, T. Sicheritz-Ponten, G. De Bellis, P. Visca, A. Cassone, A. Carattoli, Antimicrob. Agents Chemother. 52, 2616–2625 (2008)",{},{"id":18,"text":750,"url":18,"identifiers":751},"D. Cooper, J.S. Cory, D.A. Theilmann, J.H. Myers, Ecol. Entomol. 28, 41–50 (2003)",{},{"id":18,"text":753,"url":18,"identifiers":754},"A.D. Smith, Z. Xuan, M.Q. Zhang, BMC Bioinformatics 9, 128–135 (2008)",{},{"id":18,"text":756,"url":18,"identifiers":757},"C. Sreekumar, D. Hill, K. Miska, M. Vianna, L. Yan, R. Myers, J. Dubey, Int. J. Parasitol. 35, 991–999 (2005)",{},{"id":18,"text":759,"url":18,"identifiers":760},"W. Wang, H. Wu, G. Zhou, Chinese J. Anal. Chem. 36, 775–780 (2008)",{},{"id":18,"text":762,"url":18,"identifiers":763},"O. Simón, T. Williams, M.L. Feber, J. Taulemesse, P. Caballero, Biol. Control 44, 321–330 (2008)",{},{"id":18,"text":765,"url":18,"identifiers":766},"P.R. Hughes, R. Gettig, W.J. McCarthy, J. Invertebr. Pathol. 41, 256–261 (1983)",{},{"id":18,"text":768,"url":18,"identifiers":769},"R.L. Harrison, J. Invertebr. Pathol. 101, 181–186 (2009)",{},{"id":18,"text":771,"url":18,"identifiers":772},"S. Duffy, L.A. Shackelton, E.C. Holmes, Nat. Rev. Genet. 9, 267–276 (2008)",{},{"id":18,"text":774,"url":18,"identifiers":775},"E.A. Herniou, J.A. Jehle, Curr. Drug Targets 8, 1043–1050 (2007)",{},{"id":18,"text":777,"url":18,"identifiers":778},"S.G. Fischer, L.S. Lerman, Proc. Natl. Acad. Sci. USA 80, 1579–1583 (1983)",{},{"id":18,"text":780,"url":18,"identifiers":781},"S.G. Fischer, L.S. Lerman, Proc. Natl. Acad. Sci. USA 77, 4420–4424 (1980)",{},{"id":18,"text":783,"url":18,"identifiers":784},"S.M. Short, C.A. Suttle, Hydrobiologia 401, 19–32 (1999)",{},{"id":18,"text":786,"url":18,"identifiers":787},"K.A. Harris, C.G. Teo, Clin. Diagn. Lab. Immunol. 8, 62–73 (2001)",{},{"id":18,"text":789,"url":18,"identifiers":790},"A.E. Murray, J.T. Hollibaugh, C. Orrego, Appl. Environ. Microbiol. 62, 2676–2680 (1996)",{},{"id":18,"text":792,"url":18,"identifiers":793},"N. Fromin, J. Hamelin, S. Tarnawski, D. Roesti, N. Forestier, F. Gillet, M. Aragno, P. Rossi, Environ. Microbiol. 4, 634–643 (2002)",{},{"id":18,"text":795,"url":18,"identifiers":796},"D. Knebel-Mörsdorf, A. Kremer, F. Jahnel, J. Virol. 67, 753–758 (1993)",{},{"id":18,"text":798,"url":18,"identifiers":799},"C.W. Knopf, Virus Genes 16, 47–58 (1998)",{},{"id":18,"text":801,"url":18,"identifiers":802},"A.L. Vanarsdall, K. Okano, G.F. Rohrmann, Virology 331, 175–180 (2005)",{},{"id":18,"text":804,"url":18,"identifiers":805},"G. Muyzer, E.C. de Waal, A.G. Uitterlinden, Appl. Environ. Microbiol. 59, 695–700 (1993)",{},{"id":807,"createTime":808,"updateTime":809,"relativeEntities":810,"slug":811,"properties":812,"entityType":127,"verifyStatus":128,"verifyTime":823,"verifyNote":130,"languages":18,"translateLanguages":18,"viewCount":19,"primaryUrl":824,"fullTextUrl":18,"authors":825,"publicationType":249,"publisherRelationship":959,"citationCount":19,"citationInfo":1018,"publishDate":1021,"publishYear":1019,"citationAnalyzeStatus":314,"lastCitationAnalyze":1022,"indexDatabases":1023,"openAccess":18,"references":18,"isForceReanalyzing":481},"eb27e477-5d10-4f70-8138-39383a64d511","2024-01-04T10:57:57.573+00:00","2026-08-15T00:02:36.933+00:00",[],"Complete-genome-of-a-Puumala-virus-strain-from-Central-Europe",{"abstract":813,"title":815,"gsPaper":817,"references":819,"doi":821},{"EN":814},"\n                Puumala virus (PUUV) is one of the predominant hantavirus species in Europe causing mild to moderate cases of haemorrhagic fever with renal syndrome. Parts of Lower Saxony in north-western Germany are endemic for PUUV infections. In this study, the complete PUUV genome sequence of a bank vole-derived tissue sample from the 2007 outbreak was determined by a combined primer-walking and RNA ligation strategy. The S, M and L genome segments were 1,828, 3,680 and 6,550 nucleotides in length, respectively. Sliding-window analyses of the nucleotide sequences of all available complete PUUV genomes indicated a non-homogenous distribution of variability with hypervariable regions located at the 3′-ends of the S and M segments. The overall similarity of the coding genome regions to the other PUUV strains ranged between 80.1 and 84.7 % at the level of the nucleotide sequence and between 89.5 and 98.1 % for the deduced amino acid sequences. In comparison to the phylogenetic trees of the complete coding sequences, trees based on partial segments revealed a general drop in phylogenetic support and a lower resolution. The Astrup strain S and M segment sequences showed the highest similarity to sequences of strains from geographically close sites in the Osnabrück Hills region. In conclusion, a primer-walking-mediated strategy resulted in the determination of the first complete nucleotide sequence of a PUUV strain from Central Europe. Different levels of variability along the genome provide the opportunity to choose regions for analyses according to the particular research question, e.g., large-scale phylogenetics or within-host evolution.",{"EN":816},"Complete genome of a Puumala virus strain from Central Europe",{"VOID":818},"[\"11274435032505580831\"]",{"VOID":820},"O. Vapalahti, J. Mustonen, A. Lundkvist, H. Henttonen, A. Plyusnin, A. Vaheri, Lancet Infect. Dis. 3, 653–661 (2003)\nP. Heyman, C.S. Ceianu, I. Christova, N. Tordo, M. Beersma, M. Joao Alves, A. Lundkvist, M. Hukic, A. Papa, A. Tenorio, H. Zelena, S. Essbauer, I. Visontai, I. Golovljova, J. Connell, L. Nicoletti, M. Van Esbroeck, S. Gjeruldsen Dudman, S.W. Aberle, T. Avsic Zupanc, G. Korukluoglu, A. Nowakowska, B. Klempa, R.G. Ulrich, S. Bino, O. Engler, M. Opp, A. Vaheri, Eur. Surveill. 16, 36 (2011)\nL. Pettersson, J. Boman, P. Juto, M. Evander, C. Ahlm, Emerg. Infect. Dis. 14, 808–810 (2008)\nJ. Clement, G. van der Groen, P. Maes, M. Van Ranst, Eur. J. Clin. Microbiol. Infect. Dis. 29, 1–2 (2010); author reply 3\nJ. Hofmann, H. Meisel, B. Klempa, S.M. Vesenbeckh, R. Beck, D. Michel, J. Schmidt-Chanasit, R.G. Ulrich, S. Grund, G. Enders, D.H. Kruger, Emerg. Infect. Dis. 14, 850–852 (2008)\nI. Eckerle, E. Jakob, J. Hofmann, A. Schmidt-Bacher, J. Ettinger, P. Schnitzler, Zoonoses Public Health 59(Suppl 2), 110–115 (2012)\nK. Tersago, A. Schreurs, C. Linard, R. Verhagen, S. Van Dongen, H. Leirs, Vector Borne Zoonotic Dis. 8, 235–244 (2008)\nJ. Mustonen, J. Partanen, M. Kanerva, K. Pietila, O. Vapalahti, A. Pasternack, A. Vaheri, Kidney Int. 49, 217–221 (1996)\nD.H. Kruger, R. Ulrich, A. Lundkvist, Microbes Infect. 3, 1129–1144 (2001)\nK.B. Sundstrom, M. Stoltz, N. Lagerqvist, A. Lundkvist, K. Nemirov, J. Klingstrom, J. Virol. 85, 1747–1756 (2011)\nR.M. Elliott, J. Gen. Virol. 71(Pt 3), 501–522 (1990)\nR.M. Elliott, G. Blakqori, Bunyaviridae, in Molecular and cellular biology, ed. by A. Plyusnin, R.M. Elliott (Caister Academic Press, Norfolk, 2011), pp. 1–39\nC.S. Schmaljohn, G.B. Jennings, J. Hay, J.M. Dalrymple, Virology 155, 633–643 (1986)\nK.M. Jaaskelainen, P. Kaukinen, E.S. Minskaya, A. Plyusnina, O. Vapalahti, R.M. Elliott, F. Weber, A. Vaheri, A. Plyusnin, J. Med. Virol. 79, 1527–1536 (2007)\nC. Lober, B. Anheier, S. Lindow, H.D. Klenk, H. Feldmann, Virology 289, 224–229 (2001)\nS.K. Kukkonen, A. Vaheri, A. Plyusnin, Arch. Virol. 150, 533–556 (2005)\nhttp:\u002F\u002Fwww3.rki.de\u002FSurvStat. Accessed 04 June 2014\nM. Mertens, S.S. Essbauer, A. Rang, J. Schroder, W.D. Splettstoesser, C. Kretzschmar, D.H. Kruger, M.H. Groschup, K. Matz-Rensing, R.G. Ulrich, Vet. Microbiol. 147, 420–425 (2011)\nJ. Ettinger, J. Hofmann, M. Enders, F. Tewald, R.M. Oehme, U.M. Rosenfeld, H.S. Ali, M. Schlegel, S. Essbauer, A. Osterberg, J. Jacob, D. Reil, B. Klempa, R.G. Ulrich, D.H. Kruger, Emerg. Infect. Dis. 18, 1461–1464 (2012)\nS. Essbauer, J. Schmidt, F.J. Conraths, R. Friedrich, J. Koch, W. Hautmann, M. Pfeffer, R. Wolfel, J. Finke, G. Dobler, R. Ulrich, Epidemiol. Infect. 134, 1333–1344 (2006)\nM. Mertens, E. Kindler, P. Emmerich, J. Esser, C. Wagner-Wiening, R. Wolfel, R. Petraityte-Burneikiene, J. Schmidt-Chanasit, A. Zvirbliene, M.H. Groschup, G. Dobler, M. Pfeffer, G. Heckel, R.G. Ulrich, S.S. Essbauer, Virus Genes 43, 177–191 (2011)\nB. Klempa, E. Fichet-Calvet, E. Lecompte, B. Auste, V. Aniskin, H. Meisel, C. Denys, L. Koivogui, J. ter Meulen, D.H. Kruger, Emerg. Infect. Dis. 12, 838–840 (2006)\nM. Razzauti, A. Plyusnina, H. Henttonen, A. Plyusnin, PLoS ONE 8, e64447 (2013)\nS. Escutenaire, P. Chalon, P. Heyman, G. Van der Auwera, G. van der Groen, R. Verhagen, I. Thomas, L. Karelle-Bui, A. Vaheri, P.P. Pastoret, A. Plyusnin, Virus Res. 74, 1–15 (2001)\nV. Weber de Melo, H.S. Ali, J. Freise, S. Essbauer, M. Mertens, K.M. Wanka, R. Ulrich, G. Heckel (under review)\nH. Wang, K. Yoshimatsu, H. Ebihara, M. Ogino, K. Araki, H. Kariwa, Z. Wang, Z. Luo, D. Li, C. Hang, J. Arikawa, Virology 278, 332–345 (2000)\nB. Klempa, P.T. Witkowski, E. Popugaeva, B. Auste, L. Koivogui, E. Fichet-Calvet, T. Strecker, J. Ter Meulen, D.H. Kruger, J. Virol. 86, 3819–3827 (2012)\nA. Plyusnin, O. Vapalahti, A. Vaheri, J. Gen. Virol. 77(Pt 11), 2677–2687 (1996)\nA. Alminaite, V. Halttunen, V. Kumar, A. Vaheri, L. Holm, A. Plyusnin, J. Virol. 80, 9073–9081 (2006)\nA. Alfadhli, Z. Love, B. Arvidson, J. Seeds, J. Willey, E. Barklis, J. Virol. 75, 2019–2023 (2001)\nM.D. Bowen, H. Kariwa, P.E. Rollin, C.J. Peters, S.T. Nichol, Virus Res. 38, 279–289 (1995)\nR. Ulrich, B. Hjelle, C. Pitra, D.H. 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Huelsenbeck, Bioinformatics 19, 1572–1574 (2003)",{"VOID":822},"10.1007\u002Fs11262-014-1157-6","2024-06-24T17:18:07.146+00:00","https:\u002F\u002Flink.springer.com\u002Farticle\u002F10.1007\u002Fs11262-014-1157-6",[826,850,863,880,893,908,922,945],{"id":827,"sortIndex":19,"researcher":18,"roles":828,"affiliations":829,"properties":847},"6ec3ab75-e278-4fde-b03a-6fa6100f1c2e",[136],[830,838],{"id":831,"sortIndex":19,"affiliation":832,"properties":18},"942ac534-3de5-4187-8874-8ce0a11c2032",{"id":831,"createTime":18,"updateTime":18,"relativeEntities":833,"slug":18,"properties":834,"entityType":18,"verifyStatus":18,"verifyTime":18,"verifyNote":18,"languages":18,"translateLanguages":18,"viewCount":18,"url":18,"parentIds":837,"statistic":18},[],{"title":835},{"VI":836},"Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, OIE Collaborating Centre for Zoonoses in Europe, Institute for Novel and Emerging Infectious Diseases, Greifswald - Insel Riems, Germany",[],{"id":839,"sortIndex":104,"affiliation":840,"properties":846},"41bf32be-0097-468c-a5e3-61e2f4b50c86",{"id":839,"createTime":18,"updateTime":18,"relativeEntities":841,"slug":18,"properties":842,"entityType":18,"verifyStatus":18,"verifyTime":18,"verifyNote":18,"languages":18,"translateLanguages":18,"viewCount":18,"url":18,"parentIds":845,"statistic":18},[],{"title":843},{"VI":844},"College of Veterinary Medicine, Sudan University of Science and Technology, Khartoum, Sudan",[],{},{"title":848},{"VI":849},"Hanan Sheikh Ali",{"id":851,"sortIndex":104,"researcher":18,"roles":852,"affiliations":853,"properties":860},"278a2de8-5401-46b4-9eff-859903c0b19b",[136],[854],{"id":831,"sortIndex":19,"affiliation":855,"properties":18},{"id":831,"createTime":18,"updateTime":18,"relativeEntities":856,"slug":18,"properties":857,"entityType":18,"verifyStatus":18,"verifyTime":18,"verifyNote":18,"languages":18,"translateLanguages":18,"viewCount":18,"url":18,"parentIds":859,"statistic":18},[],{"title":858},{"VI":836},[],{"title":861},{"VI":862},"Stephan Drewes",{"id":864,"sortIndex":102,"researcher":18,"roles":865,"affiliations":866,"properties":875},"0aac66cc-bc92-4848-8633-e58746d0ba8f",[136],[867],{"id":868,"sortIndex":19,"affiliation":869,"properties":18},"188a2fed-1ac2-4e89-a10d-11e769ae7806",{"id":868,"createTime":18,"updateTime":18,"relativeEntities":870,"slug":18,"properties":871,"entityType":18,"verifyStatus":18,"verifyTime":18,"verifyNote":18,"languages":18,"translateLanguages":18,"viewCount":18,"url":18,"parentIds":874,"statistic":18},[],{"title":872},{"VI":873},"Institute of Ecology and Evolution, University of Bern, Bern, Switzerland",[],{"title":876,"gsAuthor":878},{"VI":877},"Vanessa Weber de Melo",{"VOID":879},"[\"S5REgggAAAAJ\"]",{"id":881,"sortIndex":199,"researcher":18,"roles":882,"affiliations":883,"properties":890},"3b80b043-9044-4f82-90e6-7cf70d7d46d6",[136],[884],{"id":831,"sortIndex":19,"affiliation":885,"properties":18},{"id":831,"createTime":18,"updateTime":18,"relativeEntities":886,"slug":18,"properties":887,"entityType":18,"verifyStatus":18,"verifyTime":18,"verifyNote":18,"languages":18,"translateLanguages":18,"viewCount":18,"url":18,"parentIds":889,"statistic":18},[],{"title":888},{"VI":836},[],{"title":891},{"VI":892},"Mathias Schlegel",{"id":894,"sortIndex":223,"researcher":18,"roles":895,"affiliations":896,"properties":905},"88a872de-0911-4df8-8003-ea6a2e59fb7e",[136],[897],{"id":898,"sortIndex":19,"affiliation":899,"properties":18},"7b51c108-e2fd-4dde-836e-d8be75e8391b",{"id":898,"createTime":18,"updateTime":18,"relativeEntities":900,"slug":18,"properties":901,"entityType":18,"verifyStatus":18,"verifyTime":18,"verifyNote":18,"languages":18,"translateLanguages":18,"viewCount":18,"url":18,"parentIds":904,"statistic":18},[],{"title":902},{"VI":903},"Niedersächsisches Landesamt für Verbraucherschutz und Lebensmittelsicherheit, Fachbereich Schädlingsbekämpfung, Task-Force Veterinärwesen, Wardenburg, Germany",[],{"title":906},{"VI":907},"Jona Freise",{"id":909,"sortIndex":910,"researcher":18,"roles":911,"affiliations":912,"properties":919},"63e8cd01-c227-4087-b72a-6d17cec06f7b",5,[136],[913],{"id":831,"sortIndex":19,"affiliation":914,"properties":18},{"id":831,"createTime":18,"updateTime":18,"relativeEntities":915,"slug":18,"properties":916,"entityType":18,"verifyStatus":18,"verifyTime":18,"verifyNote":18,"languages":18,"translateLanguages":18,"viewCount":18,"url":18,"parentIds":918,"statistic":18},[],{"title":917},{"VI":836},[],{"title":920},{"VI":921},"Martin H. 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Hyde, Stud. Mycol. 79, 221–288 (2014)",{},{"id":18,"text":1951,"url":18,"identifiers":1952},"H. Madrid, K.C. da Cunha, J. Gene, J. Dijksterhuis, J. Cano, D.A. Sutton, J. Guarro, P.W. Crous, Persoonia 33, 48–60 (2014)",{},{"id":18,"text":1954,"url":18,"identifiers":1955},"W. Zhang, L. Li, X. Deng, J. Blumel, C.M. Nubling, A. Hunfeld, S.A. Baylis, E. Delwart, Transfusion 56, 2248–2255 (2016)",{},{"id":18,"text":1957,"url":18,"identifiers":1958},"D.D. Garbee, S.S. Pierce, J. Manning, Crit. Care Nurs. Clin. N. Am. 29, 67–79 (2017)",{},{"id":1960,"createTime":1961,"updateTime":1962,"relativeEntities":1963,"slug":1964,"properties":1965,"entityType":127,"verifyStatus":128,"verifyTime":1976,"verifyNote":130,"languages":18,"translateLanguages":18,"viewCount":19,"primaryUrl":1977,"fullTextUrl":18,"authors":1978,"publicationType":249,"publisherRelationship":2009,"citationCount":19,"citationInfo":2068,"publishDate":2071,"publishYear":2069,"citationAnalyzeStatus":1167,"lastCitationAnalyze":2072,"indexDatabases":2073,"openAccess":18,"references":18,"isForceReanalyzing":481},"e4f453df-bf57-41c9-8157-1a7fcde1a77c","2023-12-18T21:59:30.450+00:00","2026-07-27T15:19:40.041+00:00",[],"Antigenic-variation-of-bovine-ephemeral-fever-viruses-isolated-in-Iran-2012-2013",{"abstract":1966,"title":1968,"gsPaper":1970,"references":1972,"doi":1974},{"EN":1967},"Bovine ephemeral fever virus (BEFV) is an economic arthropod-borne virus distributed in Africa, Asia, and Australia. Based on the sequence of the gene encoding the surface glycoprotein G, the viral antigenic determinant, BEFV has been phylogenetically classified into three clusters, including Australia, East Asia, and the Middle East. Here, we provide evidence for antigenic variations among the BEFV isolates in Iran during the period of 2012 to 2013 and also the exotic YHL strain, which are all classified into the East Asian cluster of the virus. For this propose, the entire length of the G gene of the viruses were sequenced and phylogenetically compared. The corresponding antigenic sites (G1–G4) were analyzed and antigenic relatedness among these viruses was measured. The two Iranian viruses, which displayed substitutions at residues E503K in the site G1 and E461K in the predicted site G4, were partially neutralized by each other’s antisera (R value = 63.23%); however, these two viruses exhibited much lower cross-neutralization that measured by R value as 28.28% and 22.82%, respectively. The crucial substitution at amino acid R218K in the site G3a is believed to be the foremost cause of these declines. The data emphasize the frequent evolution of BEFV in different time periods and geographic regions, in which the new variants can emerge and likely escape from the pre-existing immunities. Thus, continuous monitoring of the circulating viruses is necessary for understanding the viral evolution and evaluation of protective immunity induced by the heterologous viruses.",{"EN":1969},"Antigenic variation of bovine ephemeral fever viruses isolated in Iran, 2012–2013",{"VOID":1971},"[\"48279784899792212\"]",{"VOID":1973},"Constable P et al (2017) Veterinary medicine: a textbook of the diseases of cattle, sheep, pigs, goats and horses. WB Saunders Company LTD, London\nWalker PJ, Klement E (2015) Epidemiology and control of bovine ephemeral fever. Vet Res 46(1):124. https:\u002F\u002Fdoi.org\u002F10.1186\u002Fs13567-015-0262-4\nWalker PJ et al (1991) Proteins of bovine ephemeral fever virus. J Gen Virol 72(1):67–74. https:\u002F\u002Fdoi.org\u002F10.1099\u002F0022-1317-72-1-67\nMcWilliam SM et al (1997) Genome organization and transcription strategy in the complex GNS-L intergenic region of bovine ephemeral fever rhabdovirus. J Gen Virol 78(6):1309–1317. https:\u002F\u002Fdoi.org\u002F10.1099\u002F0022-1317-78-6-1309\nCybinski D et al (1990) Mapping of antigenic sites on the bovine ephemeral fever virus glycoprotein using monoclonal antibodies. J Gen Virol 71(9):2065–2072. https:\u002F\u002Fdoi.org\u002F10.1099\u002F0022-1317-71-9-2065\nUren M et al (1994) Effective vaccination of cattle using the virion G protein of bovine ephemeral fever virus as an antigen. Vaccine 12(9):845–852. https:\u002F\u002Fdoi.org\u002F10.1016\u002F0264-410X(94)90295-X\nKongsuwan K et al (1998) Location of neutralizing epitopes on the G protein of bovine ephemeral fever rhabdovirus. J Gen Virol 79(11):2573–2581. https:\u002F\u002Fdoi.org\u002F10.1099\u002F0022-1317-79-11-2573\nTrinidad L et al (2014) Evolution of bovine ephemeral fever virus in the Australian episystem. J Virol 88(3):1525–1535. https:\u002F\u002Fdoi.org\u002F10.1128\u002FJVI.02797-13\nSnowdon W (1970) Bovine ephemeral fever: the reaction of cattle to different strains of ephemeral fever virus and the antigenic comparison of two strains of virus. Aust Vet J 46(6):258–266. https:\u002F\u002Fdoi.org\u002F10.1111\u002Fj.1751-0813.1970.tb15773.x\nTian F et al (1987) A comparison of a Chinese and an Australian strain of bovine ephemeral fever virus. Aust Vet J 64(5):159. https:\u002F\u002Fdoi.org\u002F10.1111\u002Fj.1751-0813.1987.tb09670.x\nCybinski D, Davis S, Zakrzewski H (1992) Antigenic variation of the bovine ephemeral fever virus glycoprotein. Adv Virol 124(3):211–224. https:\u002F\u002Fdoi.org\u002F10.1007\u002FBF01309803\nKato T et al (2009) Phylogenetic relationships of the G gene sequence of bovine ephemeral fever virus isolated in Japan, Taiwan and Australia. Vet Microbiol 137(3):217–223. https:\u002F\u002Fdoi.org\u002F10.1016\u002Fj.vetmic.2009.01.021\nTing L-J et al (2014) Relationships of bovine ephemeral fever epizootics to population immunity and virus variation. Vet Microbiol 173(3–4):241–248. https:\u002F\u002Fdoi.org\u002F10.1016\u002Fj.vetmic.2014.07.021\nWang F-I, Hsu A, Huang K (2001) Bovine ephemeral fever in Taiwan. J Vet Diagn Invest 13(6):462–467. https:\u002F\u002Fdoi.org\u002F10.1177\u002F104063870101300602\nZheng F, Qiu C (2012) Phylogenetic relationships of the glycoprotein gene of bovine ephemeral fever virus isolated from mainland China, Taiwan, Japan, Turkey, Israel and Australia. Virol J 9(1):268. https:\u002F\u002Fdoi.org\u002F10.1186\u002F1743-422X-9-268\nAziz-Boaron O et al (2012) Circulation of bovine ephemeral fever in the Middle East—strong evidence for transmission by winds and animal transport. Vet Microbiol 158(3):300–307. https:\u002F\u002Fdoi.org\u002F10.1016\u002Fj.vetmic.2012.03.003\nOğuzoğlu T et al (2015) A report on bovine ephemeral fever virus in Turkey: antigenic variations of different strains of EFV in the 1985 and 2012 outbreaks using partial glycoprotein gene sequences. Transbound Emerg Dis 62(5):e66–e70. https:\u002F\u002Fdoi.org\u002F10.1111\u002Ftbed.12187\nBakhshesh M, Abdollahi D (2015) Bovine ephemeral fever in Iran: diagnosis, isolation and molecular characterization. J Arthropod Borne Dis 9(2):195\nHsieh Y-C et al (2006) DNA sequence analysis of glycoprotein G gene of bovine ephemeral fever virus and development of a double oil emulsion vaccine against bovine ephemeral fever. J Vet Med Sci 68(6):543–548. https:\u002F\u002Fdoi.org\u002F10.1292\u002Fjvms.68.543\nInaba Y et al (1968) Bovine epizootic fever. Jpn J Microbiol 12(4):457–469. https:\u002F\u002Fdoi.org\u002F10.1111\u002Fj.1348-0421.1968.tb00419.x\nThompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. 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Rec. 161, 279 (2007)",{"doi":2366},"10.1136\u002Fvr.161.8.279-a",{"id":18,"text":2368,"url":18,"identifiers":2369},"S. Payungporn, S. Chutinimitkul, A. Chaisingh, S. Damrongwantanapokin, C. Buranathai, A. Amonsin, A. Theamboonlers, Y. Poovorawan, J. Virol. Methods 131, 143 (2006)",{"doi":2370},"10.1016\u002Fj.jviromet.2005.08.004",{"id":18,"text":2372,"url":18,"identifiers":2373},"S. Nagarajan, K. Rajukumar, C. Tosh, V. Ramaswamy, K. Purohit, G. Saxena, P. Behera, B. Pattnaik, H.K. Pradhan, S.C. Dubey, Vet. Microbiol. 133, 154 (2009)",{"doi":2374},"10.1016\u002Fj.vetmic.2008.06.013",{"id":18,"text":2376,"url":18,"identifiers":2377},"E. Hoffmann, J. Stech, Y. Guan, R.G. Webster, D.R. Perez, Arch. Virol. 146, 2275 (2001)",{"doi":2378},"10.1007\u002Fs007050170002",{"id":18,"text":2380,"url":18,"identifiers":2381},"T.A. Hall, Nucleic Acids Symp. Ser. 41, 95 (1999)",{},{"id":18,"text":2383,"url":18,"identifiers":2384},"K. Tamura, J. Dudley, M. Nei, S. Kumar, Mol. Biol. Evol. 24, 1596 (2007)",{"doi":2385},"10.1093\u002Fmolbev\u002Fmsm092",{"id":18,"text":2387,"url":18,"identifiers":2388},"H. Chen, G.J.D. Smith, K.S. Li, J. Wang, X.H. Fan, J.M. Rayner, D. Vijaykrishna, J.X. Zhang, L.J. Zhang, C.T. Guo, C.L. Cheung, K.M. Xu, L. Duan, K. Huang, K. Qin, Y.H.C. Leung, W.L. Wu, H.R. Lu, Y. Chen, N.S. Xia, T.S.P. Naipospos, K.Y. Yuen, S.S. Hassan, S. Bahri, T.D. Nguyen, R.G. Webster, J.S.M. Peiris, Y. Guan, Proc. Natl Acad. Sci. USA 103, 2845 (2006)",{"doi":2389},"10.1073\u002Fpnas.0511120103",{"id":18,"text":2391,"url":18,"identifiers":2392},"J. Stevens, O. Blixt, T.M. Tumpey, J.K. Taubenberger, J.C. Paulson, I.A. Wilson, Science 312, 404 (2006)",{"doi":2393},"10.1126\u002Fscience.1124513",{"id":18,"text":2395,"url":18,"identifiers":2396},"E. Hoffmann, A. Lipatov, R.J. Webby, E.A. Govorkova, R.G. Webster, Proc. Natl Acad. Sci. USA 102, 12915 (2005)",{"doi":2397},"10.1073\u002Fpnas.0506416102",{"id":18,"text":2399,"url":18,"identifiers":2400},"R.P. Kamal, C. Tosh, B. Pattnaik, P. Behera, S. Nagarajan, S. Gounalan, N. Shrivastava, B.P. Shankar, H.K. Pradhan, Arch. Virol. 152, 1637 (2007)",{"doi":2401},"10.1007\u002Fs00705-007-1002-5",{"id":18,"text":2403,"url":18,"identifiers":2404},"A.C. Mishra, S.S. Cherian, A.K. Chakrabarti, S.D. Pawar, S.M. Jadhav, B. Pal, S. Raut, S. Koratkar, S.S. Kode, Virol. J. 6, 26 (2009)",{"doi":2405},"10.1186\u002F1743-422X-6-26",{"id":18,"text":2407,"url":18,"identifiers":2408},"K. Ray, V.A. Potdar, S.S. Cherian, S.D. Pawar, S.M. Jadhav, S.R. Waregaonkar, A.A. Joshi, A.C. Mishra, Virus Genes 36, 345 (2008)",{"doi":2409},"10.1007\u002Fs11262-007-0195-8",{"id":18,"text":2411,"url":18,"identifiers":2412},"Z. Li, Y. Jiang, P. Jiao, A. Wang, F. Zhao, G. Tian, X. Wang, K. Yu, Z. Bu, H. Chen, J. Virol. 80, 11115 (2006)",{"doi":2413},"10.1128\u002FJVI.00993-06",{"id":18,"text":2415,"url":18,"identifiers":2416},"D. Jackson, J.M. Hosain, D. Hickman, D.R. Perez, R.A. Lamb, Proc. Natl Acad. Sci. USA 105, 4381 (2007)",{"doi":2417},"10.1073\u002Fpnas.0800482105",{"id":18,"text":2419,"url":18,"identifiers":2420},"P. Jiao, G. Tian, Y. Li, G. Deng, Y. Jiang, C. Liu, W. Liu, Z. Bu, Y. Kawaoka, H. Chen, J. Virol. 82, 1146 (2008)",{"doi":2421},"10.1128\u002FJVI.01698-07",{"id":18,"text":2423,"url":18,"identifiers":2424},"A.S. Lipatov, S. Andreansky, R.J. Webby, D.J. Hulse, J.E. Rehg, S. Krauss, D.R. Perez, P.C. Doherty, R.G. Webster, M.Y. Sangster, J. Gen. Virol. 86, 1121 (2005)",{"doi":2425},"10.1099\u002Fvir.0.80663-0",{"id":18,"text":2427,"url":18,"identifiers":2428},"G. Gabriel, B. Dauber, T. Wolff, O. Planz, H.D. Klenk, J. Stech, Proc. Natl Acad. Sci. USA 102, 18590 (2005)",{"doi":2429},"10.1073\u002Fpnas.0507415102",{"id":18,"text":2431,"url":18,"identifiers":2432},"R. Zell, I.A. Krumbholz, A. Eitner, R. Krieg, K.J. Halbhuber, P. Wutzler, J. Gen. Virol. 88, 536 (2007)",{"doi":2433},"10.1099\u002Fvir.0.82378-0",{"id":18,"text":2435,"url":18,"identifiers":2436},"I. Mazur, D. Anhlan, D. Mitzner, L. Wixler, U. Schubert, S. Ludwig, Cell Microbiol. 10, 1140 (2008)",{"doi":2437},"10.1111\u002Fj.1462-5822.2008.01116.x",{"id":18,"text":2439,"url":18,"identifiers":2440},"D.J. Hulse-Post, J. Franks, K. Boyd, R. Salomon, E. Hoffmann, H.L. Yen, R.J. Webby, D. Walker, T.D. Nguyen, R.G. Webster, J. Virol. 81, 8515 (2007)",{"doi":2441},"10.1128\u002FJVI.00435-07",{"id":18,"text":2443,"url":18,"identifiers":2444},"WHO\u002FOIE\u002FFAO H5N1 Evolution working group. Towards unified nomenclature system for the highly pathogenic avian influenza H5N1 viruses. Emerg. Infect. Dis. 14 (2008), ( http:\u002F\u002Fwww.cdc.gov\u002FEID\u002Fcontent\u002F14\u002F7\u002Fe1.html )",{"doi":2445},"10.3201\u002Feid1407.071681",{"id":2447,"createTime":2448,"updateTime":2449,"relativeEntities":2450,"slug":2451,"properties":2452,"entityType":127,"verifyStatus":128,"verifyTime":2463,"verifyNote":130,"languages":18,"translateLanguages":18,"viewCount":19,"primaryUrl":2464,"fullTextUrl":18,"authors":2465,"publicationType":249,"publisherRelationship":2507,"citationCount":2566,"citationInfo":2567,"publishDate":2570,"publishYear":2568,"citationAnalyzeStatus":1167,"lastCitationAnalyze":2571,"indexDatabases":2572,"openAccess":18,"references":18,"isForceReanalyzing":481},"5b94ce92-3957-4ccc-80be-50c14e70a4f6","2024-01-13T21:41:40.442+00:00","2026-07-25T19:08:14.715+00:00",[],"Phylogenetic-Analysis-of-Hop-and-Grapevine-Isolates-of-Hop-Stunt-Viroid-Supports-a-Grapevine-Origin-for-Hop-Stunt-Disease",{"abstract":2453,"title":2455,"gsPaper":2457,"references":2459,"doi":2461},{"EN":2454},"We have examined sequence variability among nine isolates of hop stunt viroid (HSVd) collected from hop gardens in Tohoku district in Japan, the only area in the world where hop stunt disease is endemic. Six different consensus and one-consensus sequences as well as 12 sequence variants were detected in the nine HSVd-hop isolates, which suggested the sequence of HSVd-hop was remarkably variable. A neighbor-joining analysis was carried out on the new HSVd-hop sequences together with 44 previously described variants of HSVd isolated from hop and other species. All the HSVd-hop sequences recovered from hops cultivated in the Tohoku district of Japan as well as the type isolate and two Korean isolates form a cluster with the HSVd-g subtype 1 commonly recovered from grapevine. This close relationship between HSVd-hop and -grapevine isolates strongly supports the grapevine origin for hop stunt disease.",{"EN":2456},"Phylogenetic Analysis of Hop and Grapevine Isolates of Hop Stunt Viroid Supports a Grapevine Origin for Hop Stunt Disease",{"VOID":2458},"[\"1931618978116479771\"]",{"VOID":2460},"Sasaki M. and Shikata E., Proc Jpn Acad Ser B 53, 109-112, 1977.\nOhno T., Takamatsu N., Meshi T., and Okada Y., Nucl Acids Res 11, 6185-6197, 1983.\nSano T., Uyeda I., Shikata E., Ohno T., and Okada Y., Nucl Acids Res 12, 3427-3434, 1984.\nSano T., Uyeda I., Shikata E., Meshi T., Ohno T., and Okada Y., J Gen Virol 66, 333-338, 1985.\nSano T., Ohshima K., Hataya T., Uyeda I., Shikata E., Chou T.G., Meshi T., and Okada Y., J Gen Virol 67, 1673-1678, 1986.\nSano T., Hataya T. and Shikata E., Nucl Acids Res 16, 347, 1988.\nSano T., Hataya T., Terai Y., and Shikata E., J Gen Virol 70, 1311-1319, 1989.\nKofalvi S.A., Marcos J.F., Canizares M.C., Pallas V., and Candresse T., J Gen Virol 78, 3177-3186, 1997.\nShikata E., Seminars in Virology 1, 107-116, 1990.\nLafontaine D.A., Deschenes P., Bussiere F., Poisson V., and Perreault J-P., Nucl Acids Res 27, 186-187, 1999.\nLee J.Y., Puchta H., Ramm K., and Sänger H.L., Nucl Acids Res 16, 8708, 1988.\nSaitou N. and Nei M., Mol Biol Evol 4, 406-425, 1987.\nFelsenstein J., Cladistics 5, 164-166, 1989.\nVisvader J.E., Symons R.H., Nucl Acids Res 13, 2907-2920, 1985.\nSano T., Kudo H., Sugimoto T., and Shikata E., J Virol Methods 19, 109-120, 1988.\nPuchta H., Ramm K. and Sänger H.L., Nucl Acids Res 16, 2730, 1988.\nPuchta H., Ramm K., Luckinger R., Freimuller K., and Sänger H.L., Nucl Acids Res 17, 5841, 1989.\nPolivka H., Staub U. and Gross H.J., J Gen Virol 77, 155-161, 1996.\nReanwarakorn K. and Semancik J.S., Phytopathology 89, 568-574, 1999.\nPuchta H., Ramm K. and Sénger H.L., Nucl Acids Res 16, 8171, 1988.\nMori Y., Hop. 520pp. Hokkaido Univ. Co-op Press. Sapporo, Japan., 1995 (in Japanese).\nYamamoto H., Kagami Y., Kurokawa M., Nishimura S., and Kubo S., Rep Res Lab Kirin Brew Co Ltd 16, 49-62, 1973.\nSasaki M. and Shikata E., Rev. Plant Protec. Res. 13, 97-113, 1980.\nLi S., Onodera S., Sano T., Yoshida K., Wang G., and Shikata E., Ann Phytopathol Soc Jpn 61, 381-390, 1995.\nSano T., Ito S., Narita M., Murakami A., and Shikata E., in Abstract of XIth International Congress of Virology, August 9–13, Sydney, Australia, 1999.\nBar-Joseph, M., In Proc 13th IOCV Conference, pp. 226-229, 1996.\nPuchta H., Ramm K., Haas R., Bar-Joseph M., Luckinger R., Freimuller K., and Sänger H.L., Nucl Acids Res 17, 1247, 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cuộn lá củ cải Iran (BCTIV) đã được báo cáo trước đây như một curtovirus riêng biệt tại Iran. Các trình tự nucleotide hoàn chỉnh của ba mẫu BCTIV, mỗi mẫu một từ miền trung, miền nam và miền đông nam Iran, lần lượt có độ dài 2844, 2844 và 2845 nt. BCTIV chia sẻ độ giống nhau cao nhất về trình tự nucleotide (52,3%) với virus cuộn lá rau bina (SpCTV) và độ giống nhau thấp nhất (46,6%) với virus cuộn lá củ cải (HrCTV). Bộ gen BCTIV gồm ba ORF cảm giác virus (V1, V2 và V3) và hai ORF cảm giác bổ sung (C1 và C2). Không tìm thấy ORF C3 và C4 trong bộ gen BCTIV. Dựa trên sự so sánh độ giống nhau trình tự nucleotide của từng gen, ba ORF cảm giác virus có độ tương quan từ 72,7% đến 79,9% với các ORF tương ứng của các curtovirus, trong khi không tìm thấy mối liên hệ đáng kể giữa các ORF C1 và C2 của BCTIV với các curtovirus. Tuy nhiên, hai ORF này chỉ có liên quan xa với các ORF của mastrevirus. Tương tự như các virus sau, bộ gen BCTIV cần hai vùng liên gen. Vùng liên gen lớn của BCTIV bao gồm một trình tự có khả năng hình thành cấu trúc vòng mũi và một nonanucleotide mới (TAAGATT\u002FCC) với một vị trí cắt duy nhất. Phân tích phát sinh loài sử dụng trình tự amino acid được suy diễn từ các ORF riêng lẻ cho thấy rằng các ORF V2 và V3 là đơn ngành và ORF V1 được phân loại cùng với các ORF liên quan của các curtovirus. Trong khi đó, hai ORF cảm giác bổ sung được nhóm cùng với các ORF của mastrevirus. Dự đoán trên máy tính gợi ý rằng BCTIV có một bộ gen chimeric có thể hình thành từ một sự kiện tái tổ hợp liên quan đến tổ tiên của curto- và mastrevirus. Phần trăm độ giống nhau trình tự nucleotide của gen protein vỏ của mười mẫu BCTIV, được thu thập từ nhiều khu vực địa lý khác nhau ở Iran, dao động từ 87,1 đến 99,9, với các mẫu được phân bố giữa hai nhóm con. Dựa trên các tính chất sinh học và phân tử, BCTIV được đề xuất như một thành viên mới của chi Curtovirus.","Beet curly top Iran virus (BCTIV) was previously reported as a distinct curtovirus in Iran. Complete nucleotide sequences of three BCTIV isolates, one each from central, southern, and south eastern Iran were determined to be 2844, 2844, and 2845 nt long, respectively. BCTIV shared highest nucleotide sequence identity (52.3%) with Spinach curly top virus (SpCTV) and lowest identity (46.6%) with Horseradish curly top virus (HrCTV). The BCTIV genome comprises three virion-sense (V1, V2, and V3) and two complementary-sense (C1 and C2) ORFs. ORFs C3 and C4 were not found in BCTIV genome. Based on a comparison of nucleotide sequence identity of individual genes, the three virion-sense ORFs were 72.7–79.9% related to the corresponding ORFs of curtoviruses, whereas no significant relationship was found between the C1 and C2 ORFs of BCTIV and curtoviruses. These two ORFs, however, were only distantly related with those of mastreviruses. Similar to the latter viruses, the BCTIV genome comprises two intergenic regions. The BCTIV large intergenic region included a sequence capable of forming a stem loop structure and a novel nonanucleotide (TAAGATT\u002FCC) with a unique nick site. Phylogenetic analysis using deduced amino acid sequence of individual ORFs revealed that the V2 and V3 ORFs are monophyletic and the V1 ORF is classified with the related ORF of curtoviruses. Whereas the two complementary-sense ORFs are grouped with those of mastreviruses. Computer-based prediction suggested that BCTIV has a chimeric genome which may have arisen by a recombination event involving curto- and mastrevirus ancestors. Percent nucleotide sequence identities of the coat protein gene of ten isolates of BCTIV, collected from a wide range of geographical regions in Iran, varied from 87.1 to 99.9, with the isolates being distributed between two subgroups. Based on biological and molecular properties, BCTIV is proposed as a new member of the genus Curtovirus.",{"EN":2584,"VI":2585},"Genome characterization and genetic diversity of beet curly top Iran virus: a geminivirus with a novel nonanucleotide","Đặc điểm hệ gen và đa dạng di truyền của virus cuộn lá củ cải Iran: một geminivirus với một nonanucleotide mới",{"VOID":2587},"[\"1533603703338458568\"]",{"VI":2589},"BCTIV, virus cuộn lá củ cải, curtovirus, hệ gen, đa dạng di truyền, nonanucleotide",{"VOID":2591},"10.1007\u002Fs11262-008-0224-2","2024-04-28T07:49:32.877+00:00",[2594],"VI","https:\u002F\u002Flink.springer.com\u002Farticle\u002F10.1007\u002Fs11262-008-0224-2",[2597,2606,2623],{"id":2598,"sortIndex":19,"researcher":18,"roles":2599,"affiliations":2600,"properties":2601},"1cd56c3a-f4f7-4040-9218-b58c12c2d7d2",[136],[],{"title":2602,"gsAuthor":2604},{"VI":2603},"H. R. 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