[{"data":1,"prerenderedAt":-1},["ShallowReactive",2],{"_public_publisher_all{\"sortAscending\":false,\"sortField\":\"updateTime\",\"page\":0,\"size\":10,\"facet\":true,\"searchKey\":\"\"}":3,"_public_publisher_byId_b9d49dfa-198f-4150-8000-dd7a5a70898c":865,"_public_publication_all{\"sortAscending\":false,\"sortField\":\"totalCitation\",\"page\":0,\"size\":10,\"facet\":true,\"searchKey\":\"publisherId:b9d49dfa-198f-4150-8000-dd7a5a70898c,\"}":939},{"meta":4,"data":6},{"total":5},"117",[7,56,246,295,379,474,535,646,710,744],{"id":8,"createTime":9,"updateTime":10,"relativeEntities":11,"slug":12,"properties":13,"entityType":25,"verifyStatus":26,"verifyTime":27,"verifyNote":28,"languages":29,"translateLanguages":28,"viewCount":32,"subjectFields":33,"manageAffiliations":34,"indexDatabases":35,"url":36,"thumbnailPath":28,"statistic":28,"gsStatistic":37,"type":55,"analyzePriority":28},"f8d0bf97-8d89-482e-b58c-2fc481a0b79b","2025-10-27T06:27:08.591+00:00","2026-08-27T01:57:29.562+00:00",[],"T%E1%BA%A1p-ch%C3%AD-Khoa-h%E1%BB%8Dc-v%C3%A0-C%C3%B4ng-ngh%E1%BB%87-nhi%E1%BB%87t-%C4%91%E1%BB%9Bi",{"country":14,"issn":16,"title":18,"introduce":21,"gsId":23},{"VOID":15},"VN",{"VOID":17},"08667535",{"EN":19,"VI":20},"Journal of Tropical Science and Engineering","Tạp chí Khoa học và Công nghệ nhiệt đới",{"EN":22},"\u003Cp style=\"text-align:justify;\">     Journal of Tropical Science and Engineering (JTSE) is a multidisciplinary scientific journal, licensed to operate as a print journal in 2012 and an electronic journal in 2024 (License No.1479\u002FGP-BTTTT dated August 20, 2012 and No.91\u002FGP-BTTTT dated April 9, 2024 issued by the Ministry of Information and Communications of Vietnam). The JTSE is headquartered in Hanoi.\u003C\u002Fp>\u003Cp style=\"text-align:justify;\">        The JTSE is published every 3 months (4 issues\u002Fyear), publishing research results and overview articles in 3 groups of fields: Tropical Ecology and Environment; Chemistry and Material Sciences; Biomedicine and Pharmacy. In 2022, the JTSE registered the international identifier Digital Object Identifier (DOI): 10.58334\u002Fvrtc.jtst and assigned DOI codes to all articles of the journal. The members of the Editorial Board of the JTSE are prestigious scientists and leading scientists from Vietnam and many countries in the world. The JTSE has been recognized by the Vietnam State Council for Professorship to score scientific articles in Chemistry, Medicine and Biology with scores ranging from 0-0.75 points.\u003C\u002Fp>\u003Cp style=\"text-align:justify;\">      Currently, the JTSE is building and perfecting a set of criteria and making efforts to join the List of prestigious  international journals with a roadmap to enter Scopus and SCIE in the coming time.\u003C\u002Fp>",{"VOID":24},"MS2_GJQAAAAJ","PUBLISHER","VERIFIED","2025-10-27T06:27:25.058+00:00",null,[30,31],"VI","EN",0,[],[],[],"https:\u002F\u002Ftapchikhcnnd.com.vn",{"impactFactor":28,"impactFactorByYear":28,"i10Index":32,"i10IndexLast5Year":32,"totalPublication":38,"totalPublicationByYear":39,"totalCitation":43,"totalCitationByYear":44,"totalCitationPerPublication":52,"totalCitationPerPublicationByYear":53,"hindexLast5Year":42,"hindex":42},483,{"0":40,"2020":40,"2021":40,"2022":40,"2024":40,"2025":41,"2026":42},1,475,3,117,{"2017":40,"2018":40,"2019":45,"2020":46,"2021":46,"2022":47,"2023":48,"2024":49,"2025":50,"2026":51},4,5,11,6,7,53,15,0.24,{"2020":46,"2021":46,"2022":47,"2024":49,"2025":54,"2026":46},0.11,"JOURNAL",{"id":57,"createTime":58,"updateTime":10,"relativeEntities":59,"slug":60,"properties":61,"entityType":25,"verifyStatus":26,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":69,"subjectFields":70,"manageAffiliations":71,"indexDatabases":84,"url":101,"thumbnailPath":28,"statistic":102,"gsStatistic":195,"type":55,"analyzePriority":28},"cc3aedc1-bd17-441e-b403-4be82349b362","2023-05-29T12:05:16.902+00:00",[],"Vietnam-Journal-of-Mechanics",{"country":62,"issn":63,"title":65,"gsId":67},{"VOID":15},{"VOID":64},"08667136",{"EN":66},"Vietnam Journal of Mechanics",{"VOID":68},"B98qpzgAAAAJ",29,[],[72],{"id":73,"createTime":28,"updateTime":28,"relativeEntities":74,"slug":28,"properties":75,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":82,"parentIds":83,"statistic":28},"5bf72910-eb8d-41eb-b358-ea294f24f765",[],{"title":76,"country":79,"abbreviation":80},{"EN":77,"VI":78},"Vietnam Academy of Science and Technology","Viện Hàn lâm Khoa học và Công nghệ Việt Nam",{"VOID":15},{"VOID":81},"VAST","https:\u002F\u002Fvast.gov.vn\u002F",[],[85],{"id":86,"indexDatabase":87,"url":97,"indexYears":98,"academicFieldIds":99,"indexDatabaseRanking":28},"61d05d3d-1119-4247-9062-3944e6a8afd5",{"id":88,"createTime":28,"updateTime":28,"relativeEntities":89,"label":90,"description":92,"key":94,"publicationTags":95,"standard":28},"7c6668cf-5dbb-472f-ac65-0e3d0d95e1c2",[],{"EN":91,"VI":91},"ACI - Asean Citation Index",{"EN":93,"VI":93},"Cơ sở dữ liệu ACI","aci",[96],"ACI","https:\u002F\u002Fasean-cites.org\u002Fjournal_info?jid=10758","2018-2022",[100],"007635a4-2624-49b8-a8f3-fec188e6a80e","http:\u002F\u002Fvjs.ac.vn\u002Findex.php\u002Fvjmech\u002Findex",{"impactFactor":32,"impactFactorByYear":103,"i10Index":122,"i10IndexLast5Year":123,"totalPublication":124,"totalPublicationByYear":125,"totalCitation":143,"totalCitationByYear":144,"totalCitationPerPublication":163,"totalCitationPerPublicationByYear":164,"hindexLast5Year":146,"hindex":146},{"1994":104,"1995":105,"1997":54,"1998":106,"1999":105,"2000":107,"2001":108,"2002":107,"2003":107,"2004":109,"2005":110,"2006":111,"2007":105,"2008":110,"2010":112,"2011":113,"2012":114,"2013":115,"2014":105,"2015":116,"2016":111,"2017":116,"2018":117,"2019":109,"2020":118,"2021":119,"2022":115,"2023":120,"2024":121},0.12,0.08,0.05,0.02,0.1,0.15,0.14,0.09,0.07,0.21,0.73,0.52,0.13,0.26,0.36,0.61,0.64,0.27,23,2,1046,{"1979":126,"1980":127,"1981":128,"1982":129,"1983":51,"1984":129,"1985":130,"1986":128,"1987":51,"1988":51,"1989":122,"1990":128,"1991":129,"1992":128,"1993":131,"1994":132,"1995":133,"1996":133,"1997":132,"1998":131,"1999":128,"2000":122,"2001":134,"2002":130,"2003":135,"2004":122,"2005":136,"2006":133,"2007":137,"2008":138,"2009":131,"2010":134,"2011":47,"2012":139,"2013":131,"2014":134,"2015":131,"2016":135,"2017":140,"2018":132,"2019":131,"2020":141,"2021":122,"2022":142,"2023":130,"2024":123},12,17,18,19,20,25,28,27,22,21,24,38,35,37,26,39,36,1403,{"1980":40,"1982":40,"1983":40,"1991":132,"1992":45,"1993":48,"1994":49,"1995":145,"1996":146,"1997":134,"1998":140,"1999":47,"2000":136,"2001":127,"2002":128,"2003":147,"2004":148,"2005":131,"2006":149,"2007":150,"2008":151,"2009":152,"2010":153,"2011":154,"2012":155,"2013":156,"2014":152,"2015":157,"2016":158,"2017":138,"2018":159,"2019":160,"2020":159,"2021":161,"2022":162,"2023":45},9,13,31,30,46,40,65,43,119,105,89,72,63,66,70,59,68,58,1.34,{"1980":165,"1982":106,"1983":112,"1991":166,"1992":167,"1993":52,"1994":168,"1995":169,"1996":170,"1997":171,"1998":172,"1999":119,"2000":172,"2001":173,"2002":174,"2003":175,"2004":176,"2005":172,"2006":177,"2007":178,"2008":179,"2009":180,"2010":181,"2011":182,"2012":183,"2013":184,"2014":185,"2015":186,"2016":187,"2017":188,"2018":189,"2019":190,"2020":191,"2021":192,"2022":193,"2023":194},0.06,1.47,0.22,0.25,0.33,0.48,0.79,1.04,0.77,0.9,1.48,1.3,1.7,1.05,1.86,1.72,5.41,9.55,2.41,2.88,1.95,2.52,3.14,1.35,2.5,2.36,1.79,2.96,1.61,0.2,{"impactFactor":28,"impactFactorByYear":28,"i10Index":196,"i10IndexLast5Year":128,"totalPublication":197,"totalPublicationByYear":198,"totalCitation":203,"totalCitationByYear":204,"totalCitationPerPublication":219,"totalCitationPerPublicationByYear":220,"hindexLast5Year":126,"hindex":199},42,1244,{"0":147,"1979":146,"1980":127,"1981":127,"1982":199,"1983":199,"1984":129,"1985":129,"1986":128,"1987":129,"1988":51,"1989":140,"1990":127,"1991":129,"1992":129,"1993":133,"1994":147,"1995":132,"1996":69,"1997":132,"1998":131,"1999":134,"2000":140,"2001":131,"2002":134,"2003":131,"2004":133,"2005":132,"2006":131,"2007":200,"2008":138,"2009":140,"2010":132,"2011":122,"2012":201,"2013":132,"2014":140,"2015":148,"2016":122,"2017":202,"2018":69,"2019":140,"2020":69,"2021":132,"2022":139,"2023":130,"2024":133,"2025":131,"2026":138},16,47,41,32,2194,{"1997":126,"1998":205,"1999":126,"2000":145,"2001":145,"2002":126,"2003":205,"2004":127,"2005":129,"2006":146,"2007":132,"2008":136,"2009":47,"2010":131,"2011":138,"2012":206,"2013":207,"2014":208,"2015":162,"2016":209,"2017":209,"2018":210,"2019":211,"2020":212,"2021":213,"2022":214,"2023":215,"2024":216,"2025":217,"2026":218},10,54,64,62,93,123,118,122,168,159,177,205,255,154,1.76,{"1997":221,"1998":222,"1999":223,"2000":224,"2001":118,"2002":223,"2003":222,"2004":225,"2005":226,"2006":115,"2007":227,"2008":228,"2009":229,"2010":230,"2011":231,"2012":232,"2013":233,"2014":234,"2015":235,"2016":236,"2017":237,"2018":238,"2019":239,"2020":240,"2021":48,"2022":241,"2023":242,"2024":243,"2025":244,"2026":245},0.43,0.4,0.55,0.35,0.63,0.68,0.6,0.69,0.42,0.89,1.52,1.32,2.29,2.38,1.93,4.04,2.91,4.24,4.54,4.21,4.3,8.85,7.59,10.2,4.4,{"id":247,"createTime":248,"updateTime":10,"relativeEntities":249,"slug":250,"properties":251,"entityType":25,"verifyStatus":26,"verifyTime":261,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":147,"subjectFields":262,"manageAffiliations":263,"indexDatabases":264,"url":273,"thumbnailPath":28,"statistic":274,"gsStatistic":290,"type":55,"analyzePriority":28},"b5209d2b-2258-40ef-8732-874e80fe24a5","2023-08-01T04:13:30.887+00:00",[],"VNU-Journal-of-Science-Medical-and-Pharmaceutical-Sciences",{"country":252,"eissn":253,"issn":255,"title":257,"gsId":259},{"VOID":15},{"VOID":254},"25881132",{"VOID":256},"26159309",{"EN":258},"VNU Journal of Science: Medical and Pharmaceutical Sciences",{"VOID":260},"nxupvWQAAAAJ","2023-08-01T04:16:22.633+00:00",[],[],[265],{"id":266,"indexDatabase":267,"url":272,"indexYears":28,"academicFieldIds":28,"indexDatabaseRanking":28},"1c684ac3-c7bf-4466-8841-3c6146083c3c",{"id":88,"createTime":28,"updateTime":28,"relativeEntities":268,"label":269,"description":270,"key":94,"publicationTags":271,"standard":28},[],{"EN":91,"VI":91},{"EN":93,"VI":93},[96],"https:\u002F\u002Fasean-cites.org\u002Fjournal_info?jid=11969","https:\u002F\u002Fjs.vnu.edu.vn\u002FMPS",{"impactFactor":32,"impactFactorByYear":275,"i10Index":32,"i10IndexLast5Year":32,"totalPublication":276,"totalPublicationByYear":277,"totalCitation":282,"totalCitationByYear":283,"totalCitationPerPublication":284,"totalCitationPerPublicationByYear":285,"hindexLast5Year":45,"hindex":45},{"2019":106,"2020":110,"2021":104,"2022":104,"2023":109,"2024":108},360,{"2016":140,"2017":278,"2018":69,"2019":148,"2020":279,"2021":200,"2022":280,"2023":281,"2024":200},34,48,49,50,163,{"2016":145,"2017":145,"2018":135,"2019":140,"2020":50,"2021":135,"2022":128,"2023":48},0.45,{"2016":224,"2017":117,"2018":286,"2019":287,"2020":288,"2021":284,"2022":289,"2023":104},0.72,0.87,1.1,0.37,{"impactFactor":28,"impactFactorByYear":28,"i10Index":32,"i10IndexLast5Year":32,"totalPublication":136,"totalPublicationByYear":291,"totalCitation":127,"totalCitationByYear":292,"totalCitationPerPublication":293,"totalCitationPerPublicationByYear":294,"hindexLast5Year":123,"hindex":42},{"0":123,"2014":40,"2015":40,"2016":130},{"2016":40,"2019":123,"2021":123,"2023":45,"2024":42,"2025":40,"2026":40},0.71,{"2016":106},{"id":296,"createTime":297,"updateTime":10,"relativeEntities":298,"slug":299,"properties":300,"entityType":25,"verifyStatus":26,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":51,"subjectFields":310,"manageAffiliations":311,"indexDatabases":312,"url":313,"thumbnailPath":28,"statistic":314,"gsStatistic":349,"type":55,"analyzePriority":28},"e7ce3904-ad2d-4341-b39e-98ebe8da5908","2023-06-13T10:30:04.853+00:00",[],"Communications-in-Physics",{"country":301,"eissn":302,"issn":304,"title":306,"gsId":308},{"VOID":15},{"VOID":303},"28155947",{"VOID":305},"08863166",{"EN":307},"Communications in Physics",{"VOID":309},"FStER9AAAAAJ",[],[],[],"https:\u002F\u002Fvjs.ac.vn\u002Findex.php\u002Fcip",{"impactFactor":32,"impactFactorByYear":315,"i10Index":199,"i10IndexLast5Year":45,"totalPublication":321,"totalPublicationByYear":322,"totalCitation":326,"totalCitationByYear":327,"totalCitationPerPublication":335,"totalCitationPerPublicationByYear":336,"hindexLast5Year":126,"hindex":126},{"2008":110,"2009":316,"2010":165,"2011":317,"2012":317,"2013":112,"2014":318,"2015":105,"2016":108,"2017":116,"2018":318,"2019":52,"2020":319,"2021":284,"2022":320,"2023":116,"2024":222},0.3,0.03,0.16,0.34,0.28,738,{"2007":323,"2008":145,"2009":145,"2010":136,"2011":139,"2012":324,"2013":138,"2014":151,"2015":69,"2016":151,"2017":325,"2018":142,"2019":50,"2020":201,"2021":141,"2022":152,"2023":150,"2024":278,"2025":123},14,107,56,947,{"2007":148,"2008":49,"2009":49,"2010":127,"2011":328,"2012":155,"2013":278,"2014":329,"2015":206,"2016":330,"2017":331,"2018":332,"2019":333,"2020":334,"2021":127,"2022":132,"2023":148},52,94,86,129,76,91,106,1.28,{"2007":337,"2008":338,"2009":338,"2010":293,"2011":339,"2012":340,"2013":341,"2014":342,"2015":179,"2016":232,"2017":343,"2018":344,"2019":180,"2020":345,"2021":346,"2022":347,"2023":348},2.14,0.78,1.41,0.83,0.97,1.45,2.3,2.11,2.59,0.44,0.65,0.75,{"impactFactor":28,"impactFactorByYear":28,"i10Index":133,"i10IndexLast5Year":145,"totalPublication":350,"totalPublicationByYear":351,"totalCitation":355,"totalCitationByYear":356,"totalCitationPerPublication":363,"totalCitationPerPublicationByYear":364,"hindexLast5Year":145,"hindex":323},1117,{"0":48,"1972":40,"1991":127,"1992":51,"1993":49,"1994":47,"1995":323,"1996":42,"1997":40,"1998":146,"1999":146,"2000":205,"2001":47,"2002":128,"2003":136,"2004":132,"2005":136,"2006":148,"2007":141,"2008":149,"2009":352,"2010":353,"2011":196,"2012":208,"2013":280,"2014":354,"2015":150,"2016":328,"2017":137,"2018":142,"2019":325,"2020":152,"2021":139,"2022":139,"2023":142,"2024":148,"2025":147,"2026":132},33,44,92,1611,{"2004":46,"2005":357,"2006":47,"2007":47,"2008":126,"2009":140,"2010":69,"2011":147,"2012":147,"2013":147,"2014":208,"2015":353,"2016":201,"2017":280,"2018":161,"2019":358,"2020":212,"2021":331,"2022":212,"2023":359,"2024":360,"2025":361,"2026":362},8,85,153,178,188,132,1.44,{"2004":365,"2005":169,"2006":289,"2007":320,"2008":117,"2009":171,"2010":366,"2011":367,"2012":368,"2013":225,"2014":369,"2015":288,"2016":171,"2017":370,"2018":371,"2019":231,"2020":372,"2021":373,"2022":374,"2023":375,"2024":376,"2025":377,"2026":378},0.18,0.66,0.74,0.5,0.67,1.29,1.89,2.84,3.49,3.3,4.25,5.93,6.06,4.71,{"id":380,"createTime":381,"updateTime":382,"relativeEntities":383,"slug":384,"properties":385,"entityType":25,"verifyStatus":26,"verifyTime":28,"verifyNote":28,"languages":394,"translateLanguages":28,"viewCount":127,"subjectFields":395,"manageAffiliations":396,"indexDatabases":404,"url":418,"thumbnailPath":28,"statistic":419,"gsStatistic":446,"type":55,"analyzePriority":28},"2300fd63-13a8-4ee9-92b0-d24d9e616c6b","2023-05-29T12:05:31.684+00:00","2026-08-27T01:57:29.561+00:00",[],"Journal-of-Computer-Science-and-Cybernetics",{"country":386,"issn":387,"title":389,"gsId":392},{"VOID":15},{"VOID":388},"18139663",{"EN":390,"VI":391},"Journal of Computer Science and Cybernetics","Tạp chí tin học và điều khiển học",{"VOID":393},"hVh9fuMAAAAJ",[30,31],[],[397],{"id":73,"createTime":28,"updateTime":28,"relativeEntities":398,"slug":28,"properties":399,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":82,"parentIds":403,"statistic":28},[],{"title":400,"country":401,"abbreviation":402},{"EN":77,"VI":78},{"VOID":15},{"VOID":81},[],[405],{"id":406,"indexDatabase":407,"url":412,"indexYears":413,"academicFieldIds":414,"indexDatabaseRanking":28},"0c897c2c-8ca4-4a7a-91b9-14955abc3043",{"id":88,"createTime":28,"updateTime":28,"relativeEntities":408,"label":409,"description":410,"key":94,"publicationTags":411,"standard":28},[],{"EN":91,"VI":91},{"EN":93,"VI":93},[96],"https:\u002F\u002Fasean-cites.org\u002Fjournal_info?jid=11305","2019-2021",[100,415,416,417],"a24a4497-b6ac-43f3-ae94-c044be819e49","b2d37900-0c9f-4074-a519-9ee0b570caa7","37da756c-1c5e-4925-87f2-a9bd3ce5859c","http:\u002F\u002Fvjs.ac.vn\u002Findex.php\u002Fjcc",{"impactFactor":32,"impactFactorByYear":420,"i10Index":129,"i10IndexLast5Year":42,"totalPublication":425,"totalPublicationByYear":426,"totalCitation":431,"totalCitationByYear":432,"totalCitationPerPublication":438,"totalCitationPerPublicationByYear":439,"hindexLast5Year":323,"hindex":323},{"2013":107,"2014":107,"2015":111,"2016":365,"2017":107,"2018":421,"2019":117,"2020":422,"2021":227,"2022":423,"2023":368,"2024":424},0.04,0.32,0.39,0.57,1184,{"2012":427,"2013":358,"2014":278,"2015":428,"2016":429,"2017":51,"2018":430,"2019":148,"2020":130,"2021":136,"2022":199,"2023":132,"2024":42},473,71,251,134,995,{"2012":433,"2013":434,"2014":434,"2015":333,"2016":435,"2017":436,"2018":437,"2019":211,"2020":281,"2021":434,"2022":126,"2023":152},149,45,114,51,232,0.84,{"2012":422,"2013":440,"2014":232,"2015":335,"2016":284,"2017":441,"2018":442,"2019":443,"2020":189,"2021":444,"2022":348,"2023":445},0.53,3.4,1.73,3.93,1.88,1.54,{"impactFactor":28,"impactFactorByYear":28,"i10Index":150,"i10IndexLast5Year":132,"totalPublication":447,"totalPublicationByYear":448,"totalCitation":449,"totalCitationByYear":450,"totalCitationPerPublication":192,"totalCitationPerPublicationByYear":460,"hindexLast5Year":51,"hindex":199},1105,{"0":47,"1981":40,"1985":199,"1986":135,"1987":136,"1988":323,"1989":126,"1990":199,"1991":127,"1992":126,"1993":47,"1994":129,"1995":130,"1996":132,"1997":142,"1998":148,"1999":201,"2000":196,"2001":353,"2002":353,"2003":352,"2004":132,"2005":131,"2006":148,"2007":147,"2008":133,"2009":131,"2010":139,"2011":201,"2012":281,"2013":142,"2014":202,"2015":69,"2016":140,"2017":136,"2018":140,"2019":134,"2020":134,"2021":133,"2022":134,"2023":134,"2024":136,"2025":49},3272,{"2007":145,"2008":323,"2009":46,"2010":48,"2011":129,"2012":148,"2013":140,"2014":69,"2015":152,"2016":160,"2017":162,"2018":451,"2019":452,"2020":453,"2021":454,"2022":455,"2023":456,"2024":457,"2025":458,"2026":459},109,173,236,318,398,469,442,440,297,{"2007":461,"2008":115,"2009":194,"2010":318,"2011":462,"2012":227,"2013":286,"2014":463,"2015":175,"2016":464,"2017":465,"2018":466,"2019":467,"2020":468,"2021":469,"2022":470,"2023":471,"2024":472,"2025":473},0.29,0.46,0.91,2.27,2.42,4.19,7.86,10.73,11.78,18.09,21.32,18.42,62.86,{"id":475,"createTime":476,"updateTime":382,"relativeEntities":477,"slug":478,"properties":479,"entityType":25,"verifyStatus":26,"verifyTime":491,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":202,"subjectFields":492,"manageAffiliations":493,"indexDatabases":509,"url":510,"thumbnailPath":28,"statistic":511,"gsStatistic":525,"type":55,"analyzePriority":28},"25b6bd10-676c-40c0-8dc3-356d1679a284","2023-05-19T02:22:33.430+00:00",[],"T%E1%BA%A1p-ch%C3%AD-Y-D%C6%B0%E1%BB%A3c-h%E1%BB%8Dc-C%E1%BA%A7n-Th%C6%A1",{"country":480,"issn":481,"title":483,"introduce":486,"gsId":489},{"VOID":15},{"VOID":482},"23541210",{"EN":484,"VI":485},"Cantho Journal of Medicine and Pharmacy","Tạp chí Y Dược học Cần Thơ",{"EN":487,"VI":488},"\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">04\u002F10\u002F2015 Ministry of Information and Communications allowed Can Tho journal of medicine and pharmacy to operate (102 \u002FGP-BTTTT)\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">07\u002F16\u002F2015 Can Tho journal of medicine and pharmacy is internationally recognized: ISSN 2354-1210\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">In 2016, The journal has been included in the list of medical science journals by The State Council for professorship which is awarded a work score of 0-0.5 points for a published article.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Can Tho Journal of Medicine and Pharmacy welcome original works that haven’t been submitted or published in other medical journals. Posts must contain content related to one of the journal’s categories.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">The content published\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">The journal is divided into 3 categories:\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">- Scientific research article: are valuable scientific works, which have been researched and accepted.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">- Overview of medicine, biology and pharmacy: serving the objective of continuing training in the fields of medicine, biology and pharmacy; to systematize classical and modern knowledge.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">- Update information on new knowledge about medicine, biology, pharmacy in the country and in the world.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Scope\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">- Publication and introduction of scientific research in the fields:\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">+ Medicine (internal medicine, surgery, pediatrics, obstetrics and gynecology, odonto-stomatology, laboratory, oncology, traditional medicine, nursing).\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">+ Biology (genetics, biotechnology).\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">+ Pharmacology (pharmaceutics, drug quality analysis-control, synthetic pharmaceutical chemistry, biochemistry, pharmacognosy, botany, clinical pharmacy).\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">- To enhance the quality of undergraduate, postgraduate education, scientifically researching and meet the necessary treatment in hospital.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">- Introducing the updated domestic and oversea information about science technology to promote scientific research and exchanging technology in local, other universities.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">- Exchanging pharmaceutical and medical information for social health developing in the Mekong Delta and Vietnam.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">The object\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Postgraduate students, student of Can Tho University of Medicine and Pharmacy, scientists from schools, research institutes, hospitals, health centers, pharmaceutical companies of the Mekong Delta; other provinces and regions in Vietnam and other country.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Address\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Headquarters of Can Tho Journal of Medicine and Pharmacy, located Scientific Research and International Cooperation Office: 179 Nguyen Van Cu Street, An Khanh Ward, Ninh Kieu District, Can Tho City, Vietnam.\u003C\u002Fspan>\u003C\u002Fp>","\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Ngày 16\u002F7\u002F2015, Tạp chí Y Dược học Cần Thơ được cấp chỉ số quốc tế: ISSN 2354-1210.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Từ tháng 4\u002F2016, Tạp chí đã được Hội đồng Giáo sư ngành Y đưa vào danh sách các tạp chí khoa học Y học được tính điểm công trình 0-0,5 điểm cho một bài báo đăng.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Năm 2020 Tạp chí Y Dược học Cần Thơ đã được phê duyệt vào danh mục của các Hội đồng Giáo sư ngành Dược học được tính điểm công trình 0-0,5 điểm cho một bài báo đăng.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tạp chí Y Dược học Cần Thơ ra 12 số\u002Fnăm, 180-200 trang\u002Fsố.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Từ tháng 12\u002F2022 Tạp chí Y Dược học Cần Thơ là thành viên của hệ thống Crossref và từ tháng 01\u002F2023 tạp chí thực hiện bình duyệt online kín 2 chiều nhằm tăng tính minh bạch, tin cậy của các công trình nghiên cứu khoa học và đảm bảo tốt nhất chất lượng khoa học của bài viết.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tôn chỉ, mục đích và phạm vi của tạp chí\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tôn chỉ và mục đích hoạt động của tạp chí: xuất bản nhằm mục đích phổ biến kết quả từ các đề tài nghiên cứu khoa học; giao lưu trao đổi khoa học, chia sẻ kinh nghiệm, học tập, đồng thời cập nhật thông tin khoa học mới trong các lĩnh vực y, sinh, dược học trong và ngoài nước.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Phạm vi của tạp chí: Tạp chí xuất bản được chia thành 3 chuyên mục: (i) Bài báo nghiên cứu khoa học là kết quả công trình nghiên cứu khoa học có giá trị đã được triển khai nghiên cứu, (ii) Bài tổng quan y, sinh, dược học: phục vụ mục tiêu đào tạo liên tục trong lĩnh vực y, sinh, dược học; nhằm hệ thống hóa những kiến thức kinh điển và hiện đại; (iii) Thông tin cập nhật kiến thức mới về y, sinh, dược học trong nước và trên thế giới.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Chính sách truy cập mở\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tạp chí Y Dược học Cần Thơ áp dụng chính sách truy cập mở đối với các bài báo đã xuất bản đến với độc giả, nhằm mở rộng cơ hội tiếp cận các kết quả nghiên cứu chất lượng cao và tăng cường trao đổi kiến thức. Tạp chí đăng tải trực tuyến (miễn phí) toàn văn các bài báo được công bố trên website của Tạp chí (https:\u002F\u002Ftapchi.ctump.edu.vn).\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Đạo đức xuất bản\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tạp chí Y Dược học Cần Thơ cam kết tuân thủ đạo đức xuất bản phù hợp với các hướng dẫn và tiêu chuẩn của the Committee on Publication Ethics (COPE), tuân thủ các nguyên tắc của COPE’s Core Practices, Best Practices Guidelines for Journal Editors và Guidelines on Good Publication Practices.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Bản thảo bài báo chỉ được chấp nhận khi được tác giả chịu trách nhiệm chính cam kết các nội dung sau: Các nội dung của bản thảo chưa được đăng tải toàn bộ hoặc một phần ở các tạp chí khác; Tất cả các tác giả đều có đóng góp một cách đáng kể vào quá trình nghiên cứu hoặc chuẩn bị bản thảo và cùng chịu trách nhiệm về các nội dung của bản thảo; Tuân thủ các biện pháp đảm bảo đạo đức nghiên cứu (ví dụ thỏa thuận đồng ý tham gia nghiên cứu).\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Cam kết bảo mật\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tạp chí cam kết thực hiện và tuân thủ các quy định của luật và các văn bản hướng dẫn liên quan đến bảo mật thông tin cá nhân trên không gian mạng. Các thông tin mà người dùng (tác giả, độc giả, biên tập viên, người phản biện) nhập vào các biểu mẫu trên Hệ thống Quản lý xuất bản trực tuyến của tạp chí chỉ được sử dụng vào các mục đích đã được tuyên bố rõ ràng và sẽ không được cung cấp cho bất kỳ bên thứ ba nào khác, hay dùng vào bất kỳ mục đích nào khác.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Phí gửi bài\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Lệ phí gửi đăng bài: 1.000.000đ\u002Fbài báo\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Lệ phí gửi đăng nhanh: 1.500.000đ\u002Fbài báo\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Đối với tác giả là cán bộ viên chức thuộc Trường Đại học Y Dược Cần Thơ thì được hỗ trợ 50% lệ phí gửi đăng bài.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Đối với sinh viên thực hiện đề tài nghiên cứu khoa học cấp trường được hỗ trợ 100% lệ phí đăng bài ( Tác giả gửi đính kèm “ Quyết định về việc giao tổ chức thực hiện đề tài nghiên cứu khoa học cấp Trường của sinh viên”).\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Hình thức nộp lệ phí:\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">1. Tiền mặt:\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Nộp trực tiếp tại Phòng Tài chính - Kế toán, Trường Đại học Y Dược Cần Thơ, số 179 Nguyễn Văn Cừ, P. An Khánh, Q. Ninh Kiều, thành phố Cần Thơ.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">2. Chuyển khoản:\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tên Tài khoản: Trường ĐHYD Cần Thơ, Số TK: 0111000115668, tại ngân hàng Vietcombank chi nhánh Cần Thơ.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Thời gian: Áp dụng từ ngày 01\u002F02\u002F2023.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">* Phí gửi bài không được hoàn trả khi bài viết bị từ chối hoặc tác giả xin rút bài viết.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Quy trình phản biện bài báo\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tạp chí Y Dược học Cần Thơ thực hiện quy trình phản biện kín hai chiều nghiêm ngặt. Danh tính của những người phản biện không được tiết lộ cho các tác giả và ngược lại. Quy trình thẩm định bài báo đăng gồm các bước sau:\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tiếp nhận bản thảo\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tác giả liên hệ gửi bản thảo đến Tạp chí qua hệ thống trực tuyến tại website: https:\u002F\u002Ftapchi.ctump.edu.vn. Hướng dẫn về cách đăng ký, gửi bài và chuẩn bị bản thảo được cung cấp trên website của Tạp chí.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Sàng lọc sơ bộ\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Sau khi Tòa soạn nhận được bài báo của tác giả, Ban Thư ký sẽ tiến hành kiểm tra sơ bộ bài báo (các yêu cầu về nội dung và hình thức). Những bài báo không đúng quy cách hoặc có nội dung không phù hợp hoặc vi phạm bản quyền sẽ bị từ chối (Ban Thư ký thông báo phản hồi đến tác giả trong vòng 1 tuần). Những bài báo đủ điều kiện, được Ban Thư ký tòa soạn chuyển đến Ban Biên tập có cùng chuyên môn với nội dung bài báo để đề xuất người phản biện. Thời gian kể từ khi Ban Biên tập nhận bài báo đến khi đề xuất người phản biện bài báo chậm nhất là 5 ngày.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Vòng phản biện\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">1. Ban Thư ký gửi bài và yêu cầu phản biện đến 02 phản biện độc lập.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">2. Các phản biện gởi nhận xét cho Ban Thư ký. Thời gian từ khi gửi bài cho phản biện đến khi nhận ý kiến của phản biện tối đa là 20 ngày.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Xử ký kết quả phản biện\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">1. Nếu ý kiến đồng ý cho đăng và không cần chỉnh sửa, Ban Thư ký tiếp tục đăng bài theo qui trình.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">2. Nếu ý kiến đồng ý đăng và cần chỉnh sửa, Ban Thư ký sẽ thông tin đến tác giả chỉnh sửa theo yêu cầu của người phản biện. Thời gian chỉnh sửa và gửi lại kéo dài không quá 2 tuần, từ khi tác giả bài báo nhận được thông tin (Quá trình này có thể lặp lại tối đa 2 lần\u002F1 bài báo). Khi có sự thống nhất, đồng ý của người phản biện; bài báo được tiếp tục đăng theo qui trình.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">3. Những bài báo có chất lượng không đạt yêu cầu, cả 2 phản biện không đồng ý cho đăng sẽ bị Tòa soạn từ chối đăng.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Xuất bản\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">1. Ban Thư ký tổng hợp các bản thảo đã được tác giả hoàn thiện sau thẩm định trình Ban Biên tập xem xét, Tổng Biên tập phê duyệt, quyết định bài đăng theo các tiêu chí: sự phù hợp nội dung với tôn chỉ và mục đích, thể loại bài viết (ưu tiên các bài có bài có nghiên cứu chuyên sâu, hàm lượng khoa học cao), đóng góp mới bài báo, bài báo được ưu tiên đăng trong số gần nhất của Tạp chí theo thứ tự: tính thời sự, chất lượng bài báo và thời gian gửi bài.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">2. Ban Biên tập và Ban Thư ký biên tập bản thảo, chế bản, đọc rà soát lỗi. Thời gian hoàn thành từ 10-15 ngày.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">3. Ban Thư ký có trách nhiệm thông báo cho tác giả bài báo (bằng e-mail) về tình hình phê duyệt bài báo, thời gian, số kỳ, tập xuất bản bài báo theo qui định.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">4. Danh sách bài báo theo số Tạp chí được in ấn và phát hành trong năm định kỳ được công bố chính thức trên website: https:\u002F\u002Ftapchi.ctump.edu.vn\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>",{"VOID":490},"wcQ1uqwAAAAJ","2023-05-30T08:17:21.868+00:00",[],[494],{"id":495,"createTime":28,"updateTime":28,"relativeEntities":496,"slug":28,"properties":497,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":507,"parentIds":508,"statistic":28},"6413896b-eca9-442b-a73f-182a58a0ce40",[],{"title":498,"address":501,"country":504,"abbreviation":505},{"EN":499,"VI":500},"Can Tho University of Medicine and Pharmacy","Trường Đại học Y Dược Cần Thơ",{"EN":502,"VI":503},"No 179, Nguyen Van Cu street, An Khanh ward, Ninh Kieu district, Can Tho city, Vietnam","Số 179, đường Nguyễn Văn Cừ, phường An Khánh, quận Ninh Kiều, thành phố Cần Thơ, Việt Nam",{"VOID":15},{"VOID":506},"ctump","http:\u002F\u002Fwww.ctump.edu.vn\u002F",[],[],"https:\u002F\u002Ftapchi.ctump.edu.vn\u002Findex.php\u002Fctump",{"impactFactor":32,"impactFactorByYear":512,"i10Index":32,"i10IndexLast5Year":32,"totalPublication":514,"totalPublicationByYear":515,"totalCitation":520,"totalCitationByYear":521,"totalCitationPerPublication":108,"totalCitationPerPublicationByYear":523,"hindexLast5Year":45,"hindex":45},{"2022":513,"2023":111,"2024":106},0.01,1556,{"2020":47,"2021":516,"2022":517,"2023":518,"2024":519,"2025":122},57,306,801,358,161,{"2021":146,"2022":280,"2023":522},99,{"2021":524,"2022":318,"2023":104},0.23,{"impactFactor":28,"impactFactorByYear":28,"i10Index":123,"i10IndexLast5Year":123,"totalPublication":526,"totalPublicationByYear":527,"totalCitation":526,"totalCitationByYear":528,"totalCitationPerPublication":40,"totalCitationPerPublicationByYear":531,"hindexLast5Year":49,"hindex":49},476,{"0":205,"2019":123,"2021":139,"2022":459,"2023":451,"2024":357,"2025":49,"2026":48},{"2021":42,"2022":123,"2023":161,"2024":529,"2025":360,"2026":530},136,83,{"2021":105,"2022":513,"2023":532,"2024":127,"2025":533,"2026":534},0.62,25.43,13.83,{"id":536,"createTime":537,"updateTime":382,"relativeEntities":538,"slug":539,"properties":540,"entityType":25,"verifyStatus":26,"verifyTime":28,"verifyNote":28,"languages":552,"translateLanguages":28,"viewCount":133,"subjectFields":553,"manageAffiliations":554,"indexDatabases":555,"url":556,"thumbnailPath":557,"statistic":558,"gsStatistic":594,"type":55,"analyzePriority":28},"6984a56a-db70-403b-9cc4-4013e1ceaffa","2023-05-09T06:47:40.346+00:00",[],"T%E1%BA%A1p%20ch%C3%AD%20Nghi%C3%AAn%20c%E1%BB%A9u%20n%C6%B0%E1%BB%9Bc%20ngo%C3%A0i",{"country":541,"issn":542,"title":544,"introduce":547,"gsId":550},{"VOID":15},{"VOID":543},"25252445",{"EN":545,"VI":546},"VNU Journal of Foreign Studies","Tạp chí Nghiên cứu nước ngoài",{"EN":548,"VI":549},"{\"ops\":[{\"insert\":\"\\n\\nThe \\n\"},{\"attributes\":{\"italic\":true},\"insert\":\"VNU Journal of Science\"},{\"insert\":\"\\n was established in 1985 for the publication of national and international research papers in all fields of natural sciences and technology, social sciences and humanities. Since then, the journal has grown in quality, size and scope and now comprises a dozen of serials spanning academic research. In 2002, with the rapid expansion of the field of Foreign Languages and International Studies, the \\n\"},{\"attributes\":{\"italic\":true},\"insert\":\"VNU Journal of Science\"},{\"insert\":\"\\n was delighted to announce the launch of the \\n\"},{\"attributes\":{\"italic\":true},\"insert\":\"VNU Journal of Science: Foreign Studies\"},{\"insert\":\"\\n.\\n\\n\\nSince 2017, as a natural development from its predecessor \\n\"},{\"attributes\":{\"italic\":true},\"insert\":\"VNU Journal of Science: Foreign Studies\"},{\"insert\":\"\\n, the\\n\"},{\"attributes\":{\"bold\":true},\"insert\":\" \"},{\"attributes\":{\"italic\":true,\"bold\":true},\"insert\":\"VNU Journal of Foreign Studies \"},{\"insert\":\"\\ncontinues to be an official, independent publication of the University of Languages and International Studies (ULIS) under Vietnam National University (VNU).\\nThe\\n\"},{\"attributes\":{\"italic\":true,\"bold\":true},\"insert\":\" VNU Journal of Foreign Studies\"},{\"attributes\":{\"italic\":true},\"insert\":\" \"},{\"insert\":\"\\npublishes \\n\"},{\"attributes\":{\"italic\":true},\"insert\":\"blind\"},{\"insert\":\"\\n \\n\"},{\"attributes\":{\"italic\":true},\"insert\":\"peer-reviewed\"},{\"insert\":\"\\n research papers, discussions and reviews concerning:\\nLinguisticsForeign language educationInternational studiesRelated social sciences and humanities\\nBimonthly in 4 English editions and 2 Vietnamese editions in the current year in both print and electronic forms, the journal provides maximum exposure for published articles, making research available to all to read and share.\\n\\n\\n\"}]}","{\"ops\":[{\"attributes\":{\"italic\":true},\"insert\":\"Tạp chí Khoa học, Đại học Quốc gia Hà Nội\"},{\"insert\":\"\\n được thành lập năm 1985 với mục đích xuất bản các bài báo nghiên cứu trong nước và quốc tế về tất cả các lĩnh vực khoa học tự nhiên và công nghệ, khoa học xã hội và nhân văn. Kể từ đó, tạp chí đã phát triển về chất lượng, quy mô và phạm vi với hàng chục số báo liên quan đến nghiên cứu học thuật. Năm 2002, với sự phát triển nhanh chóng của lĩnh vực Ngoại ngữ và Quốc tế học, \\n\"},{\"attributes\":{\"italic\":true},\"insert\":\"Tạp chí Khoa học Đại học Quốc gia Hà Nội\"},{\"insert\":\"\\n đã vui mừng thông báo ra mắt Chuyên san \\n\"},{\"attributes\":{\"italic\":true},\"insert\":\"Nghiên cứu Nước ngoài.\"},{\"insert\":\"\\n\\n\\nKể từ năm 2017, như một sự kế thừa và phát triển từ tiền thân Chuyên san \\n\"},{\"attributes\":{\"italic\":true},\"insert\":\"Nghiên cứu Nước ngoài\"},{\"insert\":\"\\n của Tạp chí Khoa học, Đại học Quốc gia Hà Nội, \\n\"},{\"attributes\":{\"bold\":true},\"insert\":\"Tạp chí\"},{\"insert\":\"\\n\"},{\"attributes\":{\"bold\":true},\"insert\":\" \"},{\"insert\":\"\\n\"},{\"attributes\":{\"italic\":true,\"bold\":true},\"insert\":\"Nghiên cứu nước ngoài \"},{\"insert\":\"\\ntiếp tục là ấn phẩm khoa học chính thức và độc lập của Trường Đại học Ngoại ngữ, Đại học Quốc gia Hà Nội.\\nTạp chí \\n\"},{\"attributes\":{\"italic\":true,\"bold\":true},\"insert\":\"Nghiên cứu nước ngoài\"},{\"insert\":\"\\n xuất bản các bài báo nghiên cứu, trao đổi và đánh giá đã được phản biện kín về:\\nNgôn ngữ họcGiảng dạy ngoại ngữ\u002Fngôn ngữQuốc tế họcCác ngành khoa học xã hội và nhân văn có liên quan\\nTạp chí xuất bản định kì 06 số\u002Fnăm (gồm 04 số tiếng Anh\u002Fnăm và 2 số tiếng Việt\u002Fnăm) dưới dạng bản in và bản điện tử. Tạp chí cung cấp khả năng tiếp cận tối đa tới các bài báo đã xuất bản nhằm giúp độc giả dễ dàng đọc và chia sẻ.\\n\"}]}",{"VOID":551},"jyihv3YAAAAJ",[30,31],[],[],[],"https:\u002F\u002Fjfs.ulis.vnu.edu.vn\u002Findex.php\u002Ffs","\u002Fapi\u002Fpublic\u002Ffile\u002Fpublisher\u002F6984a56a-db70-403b-9cc4-4013e1ceaffa\u002F92693604f5caf63c64520c5c2cd756b5.jpg",{"impactFactor":32,"impactFactorByYear":559,"i10Index":560,"i10IndexLast5Year":205,"totalPublication":561,"totalPublicationByYear":562,"totalCitation":568,"totalCitationByYear":569,"totalCitationPerPublication":579,"totalCitationPerPublicationByYear":580,"hindexLast5Year":140,"hindex":140},{"2007":317,"2010":112,"2011":109,"2012":421,"2013":165,"2014":421,"2015":421,"2016":111,"2017":116,"2018":104,"2019":109,"2020":320,"2021":284,"2022":168,"2023":116,"2024":108},67,1200,{"2002":51,"2003":51,"2004":47,"2005":352,"2006":142,"2007":131,"2008":147,"2009":139,"2010":278,"2011":138,"2012":69,"2013":206,"2014":137,"2015":69,"2016":196,"2017":563,"2018":209,"2019":564,"2020":565,"2021":566,"2022":530,"2023":567,"2024":428,"2025":281},130,78,90,80,61,3204,{"2002":42,"2003":123,"2004":123,"2005":570,"2006":47,"2007":127,"2008":571,"2009":572,"2010":196,"2011":573,"2012":130,"2013":560,"2014":574,"2015":149,"2016":325,"2017":575,"2018":576,"2019":577,"2020":578,"2021":453,"2022":206,"2023":205,"2025":51},189,223,765,246,98,171,377,355,199,2.67,{"2002":194,"2003":116,"2004":365,"2005":581,"2006":582,"2007":226,"2008":583,"2009":584,"2010":585,"2011":586,"2012":228,"2013":585,"2014":587,"2015":588,"2016":589,"2017":232,"2018":590,"2019":591,"2020":592,"2021":593,"2022":347,"2023":318,"2025":316},5.73,0.31,7.19,20.68,1.24,7.03,2.58,1.59,1.33,4.05,4.55,2.21,2.95,{"impactFactor":28,"impactFactorByYear":28,"i10Index":595,"i10IndexLast5Year":596,"totalPublication":597,"totalPublicationByYear":598,"totalCitation":609,"totalCitationByYear":610,"totalCitationPerPublication":625,"totalCitationPerPublicationByYear":626,"hindexLast5Year":142,"hindex":152},379,311,2120,{"0":361,"1960":40,"1971":40,"1975":40,"1987":40,"1988":40,"1989":40,"1990":45,"1992":40,"1993":40,"1994":46,"1995":46,"1996":45,"1997":42,"1998":49,"1999":42,"2000":123,"2001":42,"2002":48,"2003":46,"2004":145,"2005":131,"2006":51,"2007":131,"2008":135,"2009":146,"2010":127,"2011":122,"2012":148,"2013":352,"2014":201,"2015":149,"2016":599,"2017":600,"2018":601,"2019":209,"2020":602,"2021":603,"2022":604,"2023":605,"2024":606,"2025":607,"2026":608},77,75,97,143,167,156,182,231,230,128,13225,{"2003":149,"2004":150,"2005":201,"2006":196,"2007":157,"2008":436,"2009":328,"2010":611,"2011":612,"2012":333,"2013":522,"2014":613,"2015":520,"2016":614,"2017":615,"2018":616,"2019":617,"2020":618,"2021":619,"2022":620,"2023":621,"2024":622,"2025":623,"2026":624},74,88,146,228,310,347,413,636,944,1261,1400,1846,2511,1882,6.24,{"2003":627,"2004":628,"2005":629,"2006":630,"2007":186,"2008":631,"2009":45,"2010":632,"2011":633,"2012":634,"2013":42,"2014":635,"2015":636,"2016":192,"2017":637,"2018":638,"2019":628,"2020":639,"2021":640,"2022":641,"2023":642,"2024":643,"2025":644,"2026":645},9.2,4.44,1.64,2.8,2.43,4.35,3.83,3.03,3.56,3.5,4.13,3.58,4.45,5.65,8.08,7.69,7.99,10.92,14.7,{"id":647,"createTime":648,"updateTime":382,"relativeEntities":649,"slug":650,"properties":651,"entityType":25,"verifyStatus":26,"verifyTime":28,"verifyNote":664,"languages":665,"translateLanguages":28,"viewCount":142,"subjectFields":666,"manageAffiliations":667,"indexDatabases":668,"url":677,"thumbnailPath":678,"statistic":679,"gsStatistic":699,"type":55,"analyzePriority":28},"21d239d8-ac9d-48c7-a176-9d8aadc5eba5","2023-08-21T02:43:48.721+00:00",[],"Khoa-h%E1%BB%8Dc-%C4%90HQGHN-Khoa-h%E1%BB%8Dc-T%E1%BB%B1-nhi%C3%AAn-v%C3%A0-C%C3%B4ng-ngh%E1%BB%87",{"country":652,"eissn":653,"issn":655,"title":657,"introduce":660,"gsId":662},{"VOID":15},{"VOID":654},"25881140",{"VOID":656},"26159317",{"EN":658,"VI":659},"VNU Journal of Science: Natural Science and Technology","Khoa học ĐHQGHN: Khoa học Tự nhiên và Công nghệ",{"EN":661},"{\"ops\":[{\"insert\":\"The \"},{\"attributes\":{\"italic\":true},\"insert\":\"Journal\"},{\"insert\":\" \"},{\"attributes\":{\"italic\":true},\"insert\":\"of\"},{\"insert\":\" \"},{\"attributes\":{\"italic\":true},\"insert\":\"Science\"},{\"insert\":\" was established in 1985 for the publication of national and international research papers in all fields of natural sciences and technology, social sciences and humanities. Since then, the journal has grown in quality, size and scope and now comprises a dozen of serials spanning academic research.\"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"insert\":\"With the rapid expansion of the field of Economics, the VNU \"},{\"attributes\":{\"italic\":true},\"insert\":\"Journal\"},{\"insert\":\" \"},{\"attributes\":{\"italic\":true},\"insert\":\"of\"},{\"insert\":\" \"},{\"attributes\":{\"italic\":true},\"insert\":\"Science\"},{\"insert\":\" is delighted to announce the launch of the \"},{\"attributes\":{\"italic\":true},\"insert\":\"VNU Journal of Science: Natural Sciences and Technology (JS: NST) \"},{\"insert\":\"since 1985. This serial publication provides researchers with the opportunity to publish research covering aspects in these areas in the popular \"},{\"attributes\":{\"italic\":true},\"insert\":\"VNU Journal of Science\"},{\"insert\":\" series.\"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"insert\":\"As a fully open access publication, the journal will provide maximum exposure for published articles, making the research available to all to read and share. The journal will be published quarterly in March, June, September and December.\"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"attributes\":{\"bold\":true},\"insert\":\"Scope\"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"insert\":\"JS: NST is an open access journal publishing double-blinded peer-reviewed research papers, communications and reviews dealing with Biology, Bio-technology, Chemistry, Chemical engineering, Energy, Environmental technology and Materials engineering.\"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"attributes\":{\"bold\":true},\"insert\":\"Publication Ethics\"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"insert\":\"VNUJS is committed to maintaining the highest standards of publication ethics and takes all possible measures against any publication malpractices. The journal follows the guidelines and recommendations of the Committee on Publication Ethics (C.O.P.E) to ensure ethical publishing practices.\"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"insert\":\"Plagiarism is strictly prohibited and will not be tolerated. Any form of plagiarism, including but not limited to copying, paraphrasing, or reusing previously published work without proper attribution, will result in rejection of the manuscript and potential sanctions against the author. VNUJS utilizes DoIt as plagiarism detection software to verify the originality of submitted manuscripts.\"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"insert\":\"The publication ethics statement with full detail of the responsibilities of authors, reviewers and editors can be found \"},{\"attributes\":{\"bold\":true,\"color\":\"#464d50\",\"background\":\"transparent\",\"link\":\"https:\u002F\u002Fjs.vnu.edu.vn\u002FNST\u002Fethics\"},\"insert\":\"here\"},{\"attributes\":{\"bold\":true},\"insert\":\".\"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"attributes\":{\"bold\":true},\"insert\":\"Peer Review Process\"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"insert\":\"Any manuscript followed the journal’s scope and author guideline will be assigned to the managing editors. All manuscripts have undergone editorial screening and anonymous double-blind peer-review by the at least one independent expert in the field. The managing editor makes an editorial decision, which is subject to endorsement by the Editor – in - Chief.\"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"insert\":\"The journal publishing process can be found in detail \"},{\"attributes\":{\"bold\":true,\"color\":\"#464d50\",\"background\":\"transparent\",\"link\":\"https:\u002F\u002Fdrive.google.com\u002Ffile\u002Fd\u002F136BOGahfq9_5BB3TzSBsLBkQKfCUe5yN\u002Fview?usp=share_link\"},\"insert\":\"here\"},{\"insert\":\".\"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"insert\":\"\\n\"}]}",{"VOID":663},"ZfBridMAAAAJ","Admin update database",[30,31],[],[],[669],{"id":670,"indexDatabase":671,"url":676,"indexYears":28,"academicFieldIds":28,"indexDatabaseRanking":28},"6684da33-2cb9-49f9-8332-28f0bcd72e39",{"id":88,"createTime":28,"updateTime":28,"relativeEntities":672,"label":673,"description":674,"key":94,"publicationTags":675,"standard":28},[],{"EN":91,"VI":91},{"EN":93,"VI":93},[96],"https:\u002F\u002Fasean-cites.org\u002Fjournal_info?jid=11968","https:\u002F\u002Fjs.vnu.edu.vn\u002FNST","\u002Fapi\u002Fpublic\u002Ffile\u002Fpublisher\u002F21d239d8-ac9d-48c7-a176-9d8aadc5eba5\u002Fb081d4211e382646c2cdc054ead551b3.jpg",{"impactFactor":32,"impactFactorByYear":680,"i10Index":130,"i10IndexLast5Year":40,"totalPublication":682,"totalPublicationByYear":683,"totalCitation":685,"totalCitationByYear":686,"totalCitationPerPublication":691,"totalCitationPerPublicationByYear":692,"hindexLast5Year":47,"hindex":47},{"2000":317,"2005":513,"2007":107,"2010":513,"2011":317,"2012":106,"2013":107,"2014":317,"2015":107,"2016":107,"2017":421,"2018":317,"2019":421,"2020":113,"2021":582,"2022":681,"2023":194,"2024":104},0.19,1700,{"1985":131,"1986":353,"1987":130,"1988":69,"1989":69,"1990":200,"1991":196,"1992":146,"1993":279,"1994":148,"1995":200,"1996":201,"1999":278,"2000":140,"2001":128,"2002":202,"2003":353,"2004":138,"2005":202,"2006":136,"2007":278,"2008":139,"2009":137,"2010":141,"2011":278,"2012":132,"2013":202,"2014":202,"2015":278,"2016":684,"2017":359,"2018":160,"2019":162,"2020":281,"2021":157,"2022":436,"2023":358,"2024":136,"2025":135},165,870,{"1995":123,"1999":123,"2001":45,"2002":130,"2003":40,"2004":123,"2005":42,"2007":69,"2008":687,"2009":352,"2010":688,"2011":137,"2012":127,"2013":47,"2014":46,"2015":146,"2016":331,"2017":689,"2018":331,"2019":690,"2020":353,"2021":567,"2022":130,"2023":357},82,60,55,102,0.51,{"1995":421,"1999":165,"2001":167,"2002":532,"2003":107,"2004":165,"2005":111,"2007":693,"2008":694,"2009":287,"2010":445,"2011":695,"2012":119,"2013":319,"2014":318,"2015":696,"2016":338,"2017":118,"2018":697,"2019":219,"2020":698,"2021":341,"2022":423,"2023":111},0.85,2.22,1.12,0.38,2.19,0.88,{"impactFactor":28,"impactFactorByYear":28,"i10Index":126,"i10IndexLast5Year":123,"totalPublication":570,"totalPublicationByYear":700,"totalCitation":701,"totalCitationByYear":702,"totalCitationPerPublication":703,"totalCitationPerPublicationByYear":704,"hindexLast5Year":46,"hindex":205},{"0":48,"1999":146,"2000":47,"2001":45,"2002":40,"2003":199,"2004":123,"2005":42,"2006":123,"2007":145,"2008":145,"2009":46,"2010":49,"2011":47,"2012":47,"2013":49,"2014":45,"2015":45,"2016":157,"2017":40},425,{"2008":42,"2009":357,"2010":47,"2011":51,"2012":199,"2013":135,"2014":323,"2015":51,"2016":278,"2017":69,"2018":69,"2019":137,"2020":142,"2021":140,"2022":148,"2023":122,"2024":202,"2025":135,"2026":126},2.25,{"2008":169,"2009":705,"2010":706,"2011":707,"2012":342,"2013":42,"2014":636,"2015":708,"2016":709,"2017":69},1.6,1.57,1.36,3.75,0.54,{"id":711,"createTime":712,"updateTime":382,"relativeEntities":713,"slug":714,"properties":715,"entityType":25,"verifyStatus":26,"verifyTime":28,"verifyNote":664,"languages":28,"translateLanguages":28,"viewCount":150,"subjectFields":727,"manageAffiliations":728,"indexDatabases":729,"url":730,"thumbnailPath":731,"statistic":732,"gsStatistic":738,"type":55,"analyzePriority":28},"954132b5-ca74-461c-b819-45ad6e49a404","2023-08-17T03:30:52.301+00:00",[],"HPU2-Journal-of-Science-Natural-Sciences-and-Technology",{"country":716,"issn":717,"title":719,"introduce":722,"gsId":725},{"VOID":15},{"VOID":718},"28155637",{"EN":720,"VI":721},"HPU2 Journal of Science: Natural Sciences and Technology","TẠP CHÍ KHOA HỌC TRƯỜNG ĐHSP HÀ NỘI 2: CHUYÊN SAN KHOA HỌC TỰ NHIÊN VÀ CÔNG NGHỆ",{"EN":723,"VI":724},"{\"ops\":[{\"insert\":\"HPU2 journal of Science aims to provide an interdisciplinary platform for the dissemination of advances in sciences and technology. The journal publishes original papers of scientific or technological value in all areas of natural, social or educational sciences.\"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"insert\":\"The main interest of HPU2 Journal of Science: Natural sciences and technology is in papers that describe valuable findings in physics, mathematics, chemistry, biology; solving engineering or technological problems.\"},{\"attributes\":{\"align\":\"justify\",\"list\":\"bullet\"},\"insert\":\"\\n\"},{\"insert\":\"The main interest of HPU2 Journal of Science: Social Sciences and Humanity is to facilitate the publication of high-quality papers in various areas of social sciences and studies for human development.\"},{\"attributes\":{\"align\":\"justify\",\"list\":\"bullet\"},\"insert\":\"\\n\"},{\"insert\":\"The main interest of HPU2 Journal of Science: Educational Sciences is to publish papers in the field of educational sciences and applications of advances to education for improving and enhancing science education at all levels.\"},{\"attributes\":{\"align\":\"justify\",\"list\":\"bullet\"},\"insert\":\"\\n\"},{\"insert\":\"Papers that are published by HPU2 Journal of Science are doubled-blind, peer-reviewed by at least two experts, are evaluated by the section editor and editor in chief.\"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"attributes\":{\"bold\":true},\"insert\":\"Types of Articles\"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"insert\":\"Research articles\"},{\"attributes\":{\"align\":\"justify\",\"list\":\"bullet\"},\"insert\":\"\\n\"},{\"insert\":\"Academic reports of original research that have never been published elsewhere in any languages. Manuscripts, where appropriate, should contain the following sections in the order: Title, Authors, Author affiliations, Email address of corresponding authors, Abstract, Keywords, Nomenclature (if any), Introduction, Experiment, Theory, Results and Discussion, Conclusions, Conflict of Interest, Acknowledgments (if any), References, Appendix (if any). Pre-published are to be formatted according to Templates (MS-Word version). \"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"insert\":\"Review articles\"},{\"attributes\":{\"align\":\"justify\",\"list\":\"bullet\"},\"insert\":\"\\n\"},{\"insert\":\"In addition to invited reviews, literature reviews, systematic reviews, and critical reviews will be accepted for consideration. The manuscript should be composed and organized according to the required sequence: Titles, Author names, Affiliations, Email addresses, Abstract, Keywords, Main text, Conclusion, Conflict of Interest, Acknowledgments (if any), References. Although, the main text structure may vary based on the review subtopics, the articles should be formatted according to suitable Templates as research articles.\"},{\"attributes\":{\"align\":\"justify\"},\"insert\":\"\\n\"},{\"insert\":\"\\n\"}]}","{\"ops\":[{\"insert\":\"Tạp chí Khoa học Trường ĐHSP Hà Nội 2 nhằm mục đích cung cấp một nền tảng liên ngành của sự phổ biến những tiến bộ của khoa học và công nghệ. Tạp chí xuất bản các bài báo gốc có giá trị khoa học hoặc công nghệ trong tất cả các lĩnh vực khoa học tự nhiên, xã hội hoặc giáo dục.\\n\"},{\"attributes\":{\"bold\":true},\"insert\":\"Chuyên san Khoa học tự nhiên và công nghệ:\"},{\"insert\":\" Là các bài báo mô tả những phát hiện có giá trị trong vật lý, toán học, hóa học, sinh học; giải quyết các vấn đề kỹ thuật hoặc công nghệ.\"},{\"attributes\":{\"list\":\"bullet\"},\"insert\":\"\\n\"},{\"attributes\":{\"bold\":true},\"insert\":\"Chuyên san Khoa học Xã hội và Nhân văn:\"},{\"insert\":\" là các bài báo xuất bản chất lượng cao trong các lĩnh vực khác nhau của khoa học xã hội và nghiên cứu phát triển con người.\"},{\"attributes\":{\"list\":\"bullet\"},\"insert\":\"\\n\"},{\"attributes\":{\"bold\":true},\"insert\":\"Chuyên san Khoa học giáo dục:\"},{\"insert\":\" là các bài báo xuất bản trong lĩnh vực khoa học giáo dục và các ứng dụng của tiến bộ vào giáo dục để cải thiện và nâng cao giáo dục khoa học ở tất cả các cấp.\"},{\"attributes\":{\"list\":\"bullet\"},\"insert\":\"\\n\"},{\"insert\":\"Tạp chí trường ĐHSP Hà Nội 2 xuất bản được phản biện kín, xét duyệt bởi ít nhất 02 chuyên gia, và được đánh giá, chọn lựa từ ban biên tập và Tổng biên tập.\\n\"},{\"attributes\":{\"bold\":true},\"insert\":\"Các loại bài báo\"},{\"insert\":\":\\nBài báo nghiên cứu:\"},{\"attributes\":{\"list\":\"ordered\"},\"insert\":\"\\n\"},{\"insert\":\"Báo cáo học thuật về nghiên cứu ban đầu chưa từng được xuất bản ở bất kỳ nơi nào, hay bằng bất kỳ ngôn ngữ nào khác. Bản thảo thích hợp, nên chứa các phần sau theo thứ tự: Tiêu đề, Tác giả, Liên kết tác giả, Địa chỉ email của tác giả tương ứng, Tóm tắt, Từ khóa, Danh pháp (nếu có), Giới thiệu, Thử nghiệm, Lý thuyết, Kết quả và thảo luận, Kết luận, Xung đột quan tâm, Lời cảm ơn (nếu có), Tài liệu tham khảo, Phụ lục (nếu có). Bản xuất bản trước phải được định dạng theo Mẫu (phiên bản MS-Word).\\n2. Bài báo tổng quan:\\nNgoài các bài phê bình được mời, các bài phê bình tài liệu, bài phê bình có hệ thống và bài phê bình sẽ được chấp nhận để xem xét. Bản thảo cần được soạn thảo và sắp xếp theo trình tự yêu cầu: Tên sách, Tên tác giả, Liên kết, Địa chỉ email, Tóm tắt, Từ khóa, Nội dung chính, Kết luận, Xung đột lợi ích, Lời cảm ơn (nếu có), Tài liệu tham khảo. Mặc dù, cấu trúc văn bản chính có thể thay đổi dựa trên các chủ đề phụ của bài đánh giá, các bài báo nên được định dạng theo các Mẫu phù hợp như các bài báo nghiên cứu.\\n\"}]}",{"VOID":726},"YPoBvsIAAAAJ",[],[],[],"https:\u002F\u002Fsj.hpu2.edu.vn\u002Findex.php\u002Fjournal","\u002Fapi\u002Fpublic\u002Ffile\u002Fpublisher\u002F954132b5-ca74-461c-b819-45ad6e49a404\u002F2790ef1d0a7d7a40a504c2fc1647f670.jpg",{"impactFactor":32,"impactFactorByYear":733,"i10Index":32,"i10IndexLast5Year":32,"totalPublication":329,"totalPublicationByYear":735,"totalCitation":134,"totalCitationByYear":736,"totalCitationPerPublication":524,"totalCitationPerPublicationByYear":737,"hindexLast5Year":123,"hindex":123},{"2024":734},0.17,{"2022":136,"2023":278,"2024":142},{"2022":357,"2023":126,"2024":123},{"2022":169,"2023":224,"2024":165},{"impactFactor":28,"impactFactorByYear":28,"i10Index":45,"i10IndexLast5Year":45,"totalPublication":330,"totalPublicationByYear":739,"totalCitation":154,"totalCitationByYear":740,"totalCitationPerPublication":741,"totalCitationPerPublicationByYear":742,"hindexLast5Year":46,"hindex":46},{"0":123,"2022":134,"2023":136,"2024":69,"2025":145},{"2023":46,"2024":136,"2025":201,"2026":278},1.22,{"2023":113,"2024":340,"2025":743},4.56,{"id":745,"createTime":746,"updateTime":747,"relativeEntities":748,"slug":749,"properties":750,"entityType":25,"verifyStatus":26,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":69,"subjectFields":762,"manageAffiliations":763,"indexDatabases":771,"url":817,"thumbnailPath":28,"statistic":818,"gsStatistic":850,"type":55,"analyzePriority":28},"21ccdb34-414d-420f-8a60-a592a2fa848e","2023-05-29T10:42:53.358+00:00","2026-08-27T01:57:29.560+00:00",[],"Vietnam-Journal-of-Earth-Sciences",{"country":751,"eissn":752,"issn":754,"title":756,"introduce":758,"gsId":760},{"VOID":15},{"VOID":753},"26159783",{"VOID":755},"08667187",{"EN":757},"Vietnam Journal of Earth Sciences",{"EN":759},"Science of the Earth, formerly Vietnam Journal of Earth Sciences, is a peer-reviewed journal to publish high-quality articles on the entire range of earth sciences and the environment, focused on the Asia Pacific region and their correlations and connections to the globe. The journal publishes fundamental and applied research in earth sciences and the environment, including geology, geophysics, geography, soil science, hydrology, meteorology, oceanography, petroleum, geohazards, environmental sciences, environmental engineering, sustainable development, geoinformatics, geodesy, GIS, and remote sensing.",{"VOID":761},"5htfr3YAAAAJ",[],[764],{"id":73,"createTime":28,"updateTime":28,"relativeEntities":765,"slug":28,"properties":766,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":82,"parentIds":770,"statistic":28},[],{"title":767,"country":768,"abbreviation":769},{"EN":77,"VI":78},{"VOID":15},{"VOID":81},[],[772,789,800],{"id":773,"indexDatabase":774,"url":784,"indexYears":785,"academicFieldIds":786,"indexDatabaseRanking":788},"6ace2085-a177-4a27-b309-8813b832111e",{"id":775,"createTime":28,"updateTime":28,"relativeEntities":776,"label":777,"description":779,"key":781,"publicationTags":782,"standard":28},"3c7051d4-eb7d-4c57-a56b-36fc74c5d1e9",[],{"EN":778,"VI":778},"Scopus - Elsevier",{"EN":778,"VI":780},"Cơ sở dữ liệu Scopus thuộc Elsevier","scopus",[783],"SCOPUS","https:\u002F\u002Fwww.scopus.com\u002Fsourceid\u002F21101039869","2018-2024",[787],"1689391c-5702-4349-aaa7-d720ee4321fc","NONE",{"id":790,"indexDatabase":791,"url":796,"indexYears":797,"academicFieldIds":798,"indexDatabaseRanking":28},"dadb15a8-ee22-41c2-a287-49e969d9a998",{"id":88,"createTime":28,"updateTime":28,"relativeEntities":792,"label":793,"description":794,"key":94,"publicationTags":795,"standard":28},[],{"EN":91,"VI":91},{"EN":93,"VI":93},[96],"https:\u002F\u002Fasean-cites.org\u002Fjournal_info?jid=10629","2016-2022",[799],"e04f14cf-280b-4aa8-b711-b77ddd79cbaf",{"id":801,"indexDatabase":802,"url":814,"indexYears":28,"academicFieldIds":815,"indexDatabaseRanking":28},"06f278ee-37b9-41eb-a9b0-3d2d77fa502b",{"id":803,"createTime":28,"updateTime":28,"relativeEntities":804,"label":805,"description":807,"key":810,"publicationTags":811,"standard":28},"88bab0f7-443b-476c-a72a-7fa5222da393",[],{"EN":806,"VI":806},"ISI\u002FESCI  - Emerging Sources Citation Index",{"EN":808,"VI":809},"ESCI database","Cơ sở dữ liệu ESCI","esci",[812,813],"ESCI","ISI","https:\u002F\u002Fmjl.clarivate.com\u002Fsearch-results?issn=0866-7187",[816],"0db73426-2364-455f-81a4-efe0f91d712e","https:\u002F\u002Fvjs.ac.vn\u002Findex.php\u002Fjse\u002F",{"impactFactor":32,"impactFactorByYear":819,"i10Index":151,"i10IndexLast5Year":132,"totalPublication":824,"totalPublicationByYear":825,"totalCitation":827,"totalCitationByYear":828,"totalCitationPerPublication":838,"totalCitationPerPublicationByYear":839,"hindexLast5Year":129,"hindex":129},{"2007":513,"2008":513,"2010":513,"2011":107,"2012":513,"2013":513,"2014":317,"2015":107,"2016":54,"2017":168,"2018":222,"2019":820,"2020":821,"2021":371,"2022":445,"2023":822,"2024":823},1.03,1.08,1.49,1.43,1180,{"2000":689,"2001":688,"2002":281,"2003":160,"2004":279,"2005":325,"2006":516,"2007":137,"2008":200,"2009":162,"2010":436,"2011":826,"2012":434,"2013":689,"2014":280,"2015":152,"2016":150,"2017":148,"2018":352,"2019":147,"2020":152,"2021":69,"2022":148,"2023":280,"2024":139,"2025":45},79,2421,{"2000":205,"2001":51,"2002":145,"2003":146,"2004":126,"2005":51,"2006":130,"2007":128,"2008":127,"2009":152,"2010":122,"2011":137,"2012":567,"2013":200,"2014":829,"2015":687,"2016":830,"2017":831,"2018":832,"2019":833,"2020":834,"2021":835,"2022":836,"2023":837,"2024":145,"2025":40},73,197,219,380,281,328,148,183,160,2.05,{"2000":365,"2001":168,"2002":365,"2003":167,"2004":168,"2005":121,"2006":224,"2007":840,"2008":118,"2009":367,"2010":284,"2011":170,"2012":707,"2013":693,"2014":822,"2015":841,"2016":842,"2017":843,"2018":844,"2019":845,"2020":846,"2021":847,"2022":848,"2023":849,"2024":52,"2025":168},0.47,1.91,4.93,7.3,11.52,9.06,7.63,5.1,6.1,3.27,{"impactFactor":28,"impactFactorByYear":28,"i10Index":435,"i10IndexLast5Year":155,"totalPublication":130,"totalPublicationByYear":851,"totalCitation":852,"totalCitationByYear":853,"totalCitationPerPublication":860,"totalCitationPerPublicationByYear":861,"hindexLast5Year":136,"hindex":133},{"1017":40,"2015":40,"2016":123,"2017":42,"2018":42,"2019":40,"2020":45,"2022":123,"2023":123,"2024":40},3528,{"2014":323,"2015":140,"2016":201,"2017":158,"2018":522,"2019":613,"2020":854,"2021":855,"2022":701,"2023":856,"2024":857,"2025":858,"2026":859},280,403,436,525,589,366,176.4,{"2015":140,"2016":862,"2017":134,"2018":352,"2019":613,"2020":159,"2022":863,"2023":864,"2024":857},20.5,212.5,218,{"code":866,"data":867,"meta":28},"SUCCESS",{"id":868,"createTime":869,"updateTime":870,"relativeEntities":871,"slug":872,"properties":873,"entityType":25,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":32,"subjectFields":879,"manageAffiliations":880,"indexDatabases":881,"url":28,"thumbnailPath":28,"statistic":892,"gsStatistic":28,"type":28,"analyzePriority":28},"b9d49dfa-198f-4150-8000-dd7a5a70898c","2024-04-14T07:20:36.136+00:00","2025-11-21T09:52:28.691+00:00",[],"Springer-Science-and-Business-Media-LLC",{"title":874,"eissn":876},{"EN":875},"Springer Science and Business Media LLC",{"VOID":877},"1471-2148","PENDING",[],[],[882],{"id":883,"indexDatabase":884,"url":889,"indexYears":890,"academicFieldIds":28,"indexDatabaseRanking":891},"727c9e56-aaba-4364-888a-09bd3d185760",{"id":775,"createTime":28,"updateTime":28,"relativeEntities":885,"label":886,"description":887,"key":781,"publicationTags":888,"standard":28},[],{"EN":778,"VI":778},{"EN":778,"VI":780},[783],"https:\u002F\u002Fwww.scopus.com\u002Fsourceid\u002F21724","2001-2020","SCOPUS__Q1",{"impactFactor":32,"impactFactorByYear":893,"i10Index":903,"i10IndexLast5Year":140,"totalPublication":595,"totalPublicationByYear":904,"totalCitation":905,"totalCitationByYear":906,"totalCitationPerPublication":923,"totalCitationPerPublicationByYear":924,"hindexLast5Year":688,"hindex":688},{"2012":894,"2013":895,"2014":896,"2015":593,"2016":897,"2017":898,"2018":899,"2019":900,"2020":901,"2021":902,"2022":42},4.12,4.28,2.75,3.43,3.9,4.1,4.27,4.11,3.34,312,{"2005":49,"2006":45,"2007":47,"2008":147,"2009":323,"2010":128,"2011":196,"2012":122,"2013":146,"2014":131,"2015":152,"2016":148,"2017":137,"2018":136,"2019":352,"2020":122},14083,{"2005":907,"2006":908,"2007":909,"2008":910,"2009":911,"2010":912,"2011":913,"2012":914,"2013":915,"2014":916,"2015":917,"2016":918,"2017":919,"2018":920,"2019":921,"2020":922},283,752,1054,1636,959,832,1853,745,408,650,1351,983,1048,844,450,235,37.16,{"2005":925,"2006":361,"2007":926,"2008":927,"2009":928,"2010":929,"2011":930,"2012":931,"2013":932,"2014":140,"2015":933,"2016":934,"2017":935,"2018":936,"2019":937,"2020":938},40.43,95.82,52.77,68.5,46.22,44.12,32.39,31.38,31.42,32.77,27.58,35.17,13.64,10.22,{"meta":940,"data":942},{"total":941},"2905",[943,1063,1180,1368,1493,1655,1740,1888,1992,2076],{"id":944,"createTime":945,"updateTime":945,"relativeEntities":946,"slug":28,"properties":947,"entityType":956,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":32,"primaryUrl":957,"fullTextUrl":28,"authors":958,"publicationType":1033,"publisherRelationship":1034,"citationCount":28,"citationInfo":28,"publishDate":1059,"publishYear":1060,"citationAnalyzeStatus":878,"lastCitationAnalyze":28,"indexDatabases":1061,"openAccess":28,"references":28,"isForceReanalyzing":1062},"000bd20d-9fdc-440e-bae9-cab6761b8a86","2024-02-14T04:20:15.711+00:00",[],{"abstract":948,"title":950,"references":952,"doi":954},{"EN":949},"We hypothesize prebiotic evolution of self-replicating macro-molecules (Alberts, Molecular biology of the cell, 2015; Orgel, Crit Rev Biochem Mol Biol 39:99-123, 2004; Hud, Nat Commun 9:5171) favoured the constituent nucleotides and biophysical properties observed in the RNA and DNA of modern organisms. Assumed initial conditions are a shallow tide pool, containing a racemic mix of diverse nucleotide monomers (Barks et al., Chembiochem 11:1240-1243, 2010; Krishnamurthy, Nat Commun 9:5175, 2018; Hirao, Curr Opin Chem Biol 10:622-627), subject to day\u002Fnight thermal fluctuations (Piccirilli et al., Nature 343:33-37, 1990). Self-replication, like Polymerase Chain Reactions, followed as higher daytime thermal energy “melted” inter-strand hydrogen bonds causing strand separation while solar UV radiation increased prebiotic nucleobase formation (Szathmary, Proc Biol Sci 245:91-99, 1991; Materese et al., Astrobiology 17:761-770, 2017; Bera et al., Astrobiology 17:771-785, 2017). Lower night energies allowed free monomers to form hydrogen bonds with their template counterparts leading to daughter strand synthesis (Hirao, Biotechniques 40:711, 2006). Evolutionary selection favoured increasing strand length to maximize auto-catalytic function in RNA and polymer stability in double stranded DNA (Krishnamurthy, Chemistry 24:16708-16715, 2018; Szathmary, Nat Rev Genet 4:995-1001, 2003). However, synthesis of the full daughter strand before daytime temperatures produced strand separation, longer polymer length required increased speed of self-replication. Computer simulations demonstrate optimal polynucleotide autocatalytic speed is achieved when the constituent nucleotides possess a left-right asymmetry that decreases the hydrogen bond kinetic barrier for the free nucleotide attachment to the template on one side and increases bond barrier on the other side preventing it from releasing prior to covalent bond formation. This phenomenon is similar to asymmetric kinetics observed during polymerization of the front and the back ends of linear cytoskeletal proteins such as actin and microtubules (Orgel, Nature 343:18-20, 1990; Henry, Curr Opin Chem Biol 7:727-733, 2003; Walker et al., J Cell Biol 108:931-937, 1989; Crevenna et al., J Biol Chem 288:12102-12113, 2013). Since rotation of the nucleotide would disrupt the asymmetry, the optimal nucleotides must form two or more hydrogen bonds with their counterpart on the template strand. All nucleotides in modern RNA and DNA have these predicted properties. Our models demonstrate these constraints on the properties of constituent monomers result in biophysical properties found in modern DNA and RNA including strand directionality, anti-parallel strand orientation, homochirality, quadruplet alphabet, and complementary base pairing. Furthermore, competition between RNA and DNA auto-replicators for 3 nucleotides in common permit states coexistence and possible cooperative interactions that could be incorporated into nascent living systems. Our findings demonstrate the molecular properties of DNA\u002FRNA could have emerged from Darwinian competition among macromolecular replicators that selected nucleotide monomers that maximized the speed of autocatalysis.",{"EN":951},"Prebiotic competition and evolution in self-replicating polynucleotides can explain the properties of DNA\u002FRNA in modern living systems",{"VOID":953},"Alberts B. Molecular biology of the cell. 6th ed. New York: Garland Science, Taylor and Francis Group; 2015.\nOrgel LE. Prebiotic chemistry and the origin of the RNA world. Crit Rev Biochem Mol Biol. 2004;39(2):99–123.\nHud NV. Searching for lost nucleotides of the pre-RNA world with a self-refining model of early earth. Nat Commun. 2018;9(1):5171.\nBarks HL, Buckley R, Grieves GA, Di Mauro E, Hud NV, Orlando TM. Guanine, adenine, and hypoxanthine production in UV-irradiated formamide solutions: relaxation of the requirements for prebiotic purine nucleobase formation. Chembiochem. 2010;11(9):1240–3.\nKrishnamurthy R. Experimentally investigating the origin of DNA\u002FRNA on early earth. Nat Commun. 2018;9(1):5175.\nHirao I. Unnatural base pair systems for DNA\u002FRNA-based biotechnology. Curr Opin Chem Biol. 2006;10(6):622–7.\nPiccirilli JA, Krauch T, Moroney SE, Benner SA. Enzymatic incorporation of a new base pair into DNA and RNA extends the genetic alphabet. Nature. 1990;343(6253):33–7.\nSzathmary E. Four letters in the genetic alphabet: a frozen evolutionary optimum? Proc Biol Sci. 1991;245(1313):91–9.\nHirao I. Placing extra components into RNA by specific transcription using unnatural base pair systems. Biotechniques. 2006;40(6):711 713, 715 passim.\nKrishnamurthy R. Life's biological chemistry: a Destiny or destination starting from prebiotic chemistry? Chemistry. 2018;24(63):16708–15.\nSzathmary E. Why are there four letters in the genetic alphabet? Nat Rev Genet. 2003;4(12):995–1001.\nOrgel LE. Nucleic acids. Adding to the genetic alphabet. Nature. 1990;343(6253):18–20.\nHenry AA, Romesberg FE. Beyond A, C, G and T: augmenting nature's alphabet. Curr Opin Chem Biol 2003;7(6):727–733.\nJB. Self-organization of template-replicating polymers and the spontaneous rise of genetic information. Entropy. 2001;3(4):273–9.\nKervio E, Hochgesand A, Steiner UE, Richert C. Templating efficiency of naked DNA. Proc Natl Acad Sci U S A. 2010;107(27):12074–9.\nBallanco J, Mansfield ML. A model for the evolution of nucleotide polymerase directionality. PLoS One. 2011;6(4):e18881.\nRoot-Bernstein R. Simultaneous origin of homochirality, the genetic code and its directionality. Bioessays. 2007;29(7):689–98.\nPodlech J. Origin of organic molecules and biomolecular homochirality. Cell Mol Life Sci. 2001;58(1):44–60.\nWeiss MC, Sousa FL, Mrnjavac N, et al. The physiology and habitat of the last universal common ancestor. Nat Microbiol. 2016;1(9):16116.\nWoese C. The universal ancestor. Proc Natl Acad Sci U S A. 1998;95(12):6854–9.\nTsuchiya M, Ross J. Advantages of external periodic events to the evolution of biochemical oscillatory reactions. Proc Natl Acad Sci U S A. 2003;100(17):9691–5.\nBraun D, Libchaber A. Thermal force approach to molecular evolution. Phys Biol. 2004;1(1–2):1–8.\nKitadai NMS. Origins of building blocks of life: a review. Geosci Front. 2018;9(4):1117–53.\nGrzybowski BA, Fitzner K, Paczesny J, Granick S. From dynamic self-assembly to networked chemical systems. Chem Soc Rev. 2017;46(18):5647–78.\nSchrödinger E. What is life? The physical aspect of the living cell. Cambridge Eng. New York: The University press; The Macmillan company; 1945.\nSubramanian H, Gatenby RA. Evolutionary advantage of directional symmetry breaking in self-replicating polymers. J Theor Biol. 2018;446:128–36.\nTan ZJ, Chen SJ. Nucleic acid helix stability: effects of salt concentration, cation valence and size, and chain length. Biophys J. 2006;90(4):1175–90.\nHenty-Ridilla JL, Rankova A, Eskin JA, Kenny K, Goode BL. Accelerated actin filament polymerization from microtubule plus ends. Science. 2016;352(6288):1004–9.\nLi R, Gundersen GG. Beyond polymer polarity: how the cytoskeleton builds a polarized cell. Nat Rev Mol Cell Biol. 2008;9(11):860–73.\nCrevenna AH, Naredi-Rainer N, Schonichen A, et al. Electrostatics control actin filament nucleation and elongation kinetics. J Biol Chem. 2013;288(17):12102–13.\nAnderson PW. More is different. Science. 1972;177(4047):393–6.\nAnderson PWSD. Broken symmetry, emergent properties, dissipative structures, life. In: FEY, editor. Self-organizing systems: The emergence of order. Boston: Springer; 1987. p. 445–57.\nSubramanian H Gatenby RA. Evolutionary advantage of anti-parallel strand orientation of duplex DNA. Sci Rep. 2020;(10):9883.\nTaylor MS, Jacobsen EN. Asymmetric catalysis by chiral hydrogen-bond donors. Angew Chem Int Ed Engl. 2006;45(10):1520–43.\nEssevaz-Roulet B, Bockelmann U, Heslot F. Mechanical separation of the complementary strands of DNA. Proc Natl Acad Sci U S A. 1997;94(22):11935–40.\nBockelmann UE-RB, Heslot F. Molecular stick-slip motion revealed by opening DNA with Piconewton forces. Phys Rev Lett. 1997;79(22):4489–92.\nBockelmann U E-R, B., Heslot, F. DNA strand separation studied by single molecule force measurements. Phys Rev E 1998;58(4):2386–2394.\nSubramanian H, Gatenby RA. Chiral monomers ensure Orientational specificity of monomer binding during polymer self-replication. J Mol Evol. 2018;86(5):255–63.\nTupper AS, Shi K, Higgs PG. The Role of Templating in the Emergence of RNA from the Prebiotic Chemical Mixture. Life (Basel). 2017;7(4):41.\nBrack A. The molecular origins of life: assembling pieces of the puzzle. Cambridge: Cambridge University Press; 1998.\nBlake RE, Chang SJ, Lepland A. Phosphate oxygen isotopic evidence for a temperate and biologically active Archaean Ocean. Nature. 2010;464(7291):1029–32.\nAnastasi C, Crowe MA, Powner MW, Sutherland JD. Direct assembly of nucleoside precursors from two- and three-carbon units. Angew Chem Int Ed Engl. 2006;45(37):6176–9.\nChoudhary A, Kamer KJ, Powner MW, Sutherland JD, Raines RT. A stereoelectronic effect in prebiotic nucleotide synthesis. ACS Chem Biol. 2010;5(7):655–7.\nPowner MW, Sutherland JD. Phosphate-mediated interconversion of ribo- and arabino-configured prebiotic nucleotide intermediates. Angew Chem Int Ed Engl. 2010;49(27):4641–3.\nKnauth LPLD. High Archean climatic temperature inferred from oxygen isotope geochemistry of cherts in the 3.5 Ga Swaziland Supergroup, South Africa. GSA Bull. 2003;115(5):566–80.\nStill SSD, Bell AJ, Crooks GE. Thermodynamics of prediction. Phys Rev Lett. 2012;109(12):120604.\nWright S. The shifting balance theory and macroevolution. Annu Rev Genet. 1982;16:1–19.",{"VOID":955},"10.1186\u002Fs12862-020-01641-4","PUBLICATION","https:\u002F\u002Fbmcecolevol.biomedcentral.com\u002Farticles\u002F10.1186\u002Fs12862-020-01641-4",[959,993,1013],{"id":960,"sortIndex":32,"researcher":28,"roles":961,"affiliations":963,"properties":990,"displayName":992,"givenName":28,"familyName":28},"77f4cdb4-5fc8-4684-82e3-f4f0428982f4",[962],"AUTHOR",[964,972,981],{"id":965,"sortIndex":32,"affiliation":966,"properties":28},"1e953ef2-9993-4049-878c-68a4a2effbca",{"id":965,"createTime":28,"updateTime":28,"relativeEntities":967,"slug":28,"properties":968,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":971,"statistic":28},[],{"title":969},{"VI":970},"Cancer Biology and Evolution Program, Tampa, USA",[],{"id":973,"sortIndex":40,"affiliation":974,"properties":980},"6405ea43-c7d0-4ccf-a762-6af9a8bb5782",{"id":973,"createTime":28,"updateTime":28,"relativeEntities":975,"slug":28,"properties":976,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":979,"statistic":28},[],{"title":977},{"VI":978},"Integrated Mathematical Oncology Department, H. Lee Moffitt Cancer Center, Tampa, USA",[],{},{"id":982,"sortIndex":123,"affiliation":983,"properties":989},"b62d33b5-726e-49c8-ae74-0b1f58a327b2",{"id":982,"createTime":28,"updateTime":28,"relativeEntities":984,"slug":28,"properties":985,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":988,"statistic":28},[],{"title":986},{"VI":987},"Present Address: Department of Physics, National Institute of Technology, Durgapur, India",[],{},{"title":991},{"VI":992},"Hemachander Subramanian",{"id":994,"sortIndex":40,"researcher":28,"roles":995,"affiliations":996,"properties":1010,"displayName":1012,"givenName":28,"familyName":28},"016edf7c-8a70-4f99-9b0b-af9cfe4687b5",[962],[997,1003],{"id":965,"sortIndex":32,"affiliation":998,"properties":28},{"id":965,"createTime":28,"updateTime":28,"relativeEntities":999,"slug":28,"properties":1000,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1002,"statistic":28},[],{"title":1001},{"VI":970},[],{"id":973,"sortIndex":40,"affiliation":1004,"properties":1009},{"id":973,"createTime":28,"updateTime":28,"relativeEntities":1005,"slug":28,"properties":1006,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1008,"statistic":28},[],{"title":1007},{"VI":978},[],{},{"title":1011},{"VI":1012},"Joel Brown",{"id":1014,"sortIndex":123,"researcher":28,"roles":1015,"affiliations":1016,"properties":1030,"displayName":1032,"givenName":28,"familyName":28},"d4224e8a-5af6-4afb-9674-797b97be17f2",[962],[1017,1023],{"id":965,"sortIndex":32,"affiliation":1018,"properties":28},{"id":965,"createTime":28,"updateTime":28,"relativeEntities":1019,"slug":28,"properties":1020,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1022,"statistic":28},[],{"title":1021},{"VI":970},[],{"id":973,"sortIndex":40,"affiliation":1024,"properties":1029},{"id":973,"createTime":28,"updateTime":28,"relativeEntities":1025,"slug":28,"properties":1026,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1028,"statistic":28},[],{"title":1027},{"VI":978},[],{},{"title":1031},{"VI":1032},"Robert Gatenby","ARTICLE",{"url":957,"publisher":1035,"properties":1054},{"id":868,"createTime":869,"updateTime":870,"relativeEntities":1036,"slug":872,"properties":1037,"entityType":25,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":32,"subjectFields":1040,"manageAffiliations":1041,"indexDatabases":1042,"url":28,"thumbnailPath":28,"statistic":1049,"gsStatistic":28,"type":28,"analyzePriority":28},[],{"title":1038,"eissn":1039},{"EN":875},{"VOID":877},[],[],[1043],{"id":883,"indexDatabase":1044,"url":889,"indexYears":890,"academicFieldIds":28,"indexDatabaseRanking":891},{"id":775,"createTime":28,"updateTime":28,"relativeEntities":1045,"label":1046,"description":1047,"key":781,"publicationTags":1048,"standard":28},[],{"EN":778,"VI":778},{"EN":778,"VI":780},[783],{"impactFactor":32,"impactFactorByYear":1050,"i10Index":903,"i10IndexLast5Year":140,"totalPublication":595,"totalPublicationByYear":1051,"totalCitation":905,"totalCitationByYear":1052,"totalCitationPerPublication":923,"totalCitationPerPublicationByYear":1053,"hindexLast5Year":688,"hindex":688},{"2012":894,"2013":895,"2014":896,"2015":593,"2016":897,"2017":898,"2018":899,"2019":900,"2020":901,"2021":902,"2022":42},{"2005":49,"2006":45,"2007":47,"2008":147,"2009":323,"2010":128,"2011":196,"2012":122,"2013":146,"2014":131,"2015":152,"2016":148,"2017":137,"2018":136,"2019":352,"2020":122},{"2005":907,"2006":908,"2007":909,"2008":910,"2009":911,"2010":912,"2011":913,"2012":914,"2013":915,"2014":916,"2015":917,"2016":918,"2017":919,"2018":920,"2019":921,"2020":922},{"2005":925,"2006":361,"2007":926,"2008":927,"2009":928,"2010":929,"2011":930,"2012":931,"2013":932,"2014":140,"2015":933,"2016":934,"2017":935,"2018":936,"2019":937,"2020":938},{"pages":1055,"volume":1057},{"VOID":1056},"1-9",{"VOID":1058},"20","2020-06-26",2020,[891],false,{"id":1064,"createTime":1065,"updateTime":1066,"relativeEntities":1067,"slug":1068,"properties":1069,"entityType":956,"verifyStatus":26,"verifyTime":1066,"verifyNote":1078,"languages":28,"translateLanguages":28,"viewCount":32,"primaryUrl":1079,"fullTextUrl":28,"authors":1080,"publicationType":1033,"publisherRelationship":1152,"citationCount":28,"citationInfo":28,"publishDate":1177,"publishYear":1178,"citationAnalyzeStatus":878,"lastCitationAnalyze":28,"indexDatabases":1179,"openAccess":28,"references":28,"isForceReanalyzing":1062},"00180655-7f29-487a-92a6-06aa4fbb6573","2024-01-30T19:23:19.782+00:00","2024-12-31T03:29:55.264+00:00",[],"Range-wide-genetic-structure-and-demographic-history-in-the-bat-ectoparasite-Cimex-adjunctus",{"abstract":1070,"title":1072,"references":1074,"doi":1076},{"EN":1071},"Evolutionary histories of parasite and host populations are intimately linked such that their spatial genetic structures may be correlated. While these processes have been relatively well studied in specialist parasites and their hosts, less is known about the ecological and evolutionary consequences of relationships between generalist ectoparasites and their hosts. The aim of this study was to investigate the genetic structure and demographic history of a bat ectoparasite, Cimex adjunctus, whose host affinity is weak but the biology of the potential hosts have been well studied. This ectoparasite has been hypothesized to rely on its hosts for dispersal due to its low inherent dispersal potential. Here we describe genetic diversity and demographic history in C. adjunctus through most of its range in North America. We investigated variation at the cytochrome c oxidase 1 mitochondrial gene and nine microsatellite markers, and tested the prediction that genetic diversity in C. adjunctus is spatially structured. We also tested the prediction that demographic history in C. adjunctus is characterized by range and demographic expansion as a consequence of post-Pleistocene climate warming. We found stronger spatial structuring of genetic diversity in C. adjunctus than has been quantified in two of its hosts, but contrast in amount of variation explained by host association with different genetic markers (i.e., nuclear vs mitochondrial DNA). Also, C. adjunctus’ history is not primarily characterized by demographic and range expansion, as is the case with two of its key hosts. Our study shows different patterns of genetic structure and demographic history in C. adjunctus than have been detected in two of its key hosts. Our results suggest an effect of a loose parasite-host relationship and anti-parasitism strategies on genetic structure and post-Pleistocene recovery of population size.",{"EN":1073},"Range-wide genetic structure and demographic history in the bat ectoparasite Cimex adjunctus",{"VOID":1075},"Poulin R. The functional importance of parasites in animal communities: many roles at many levels? Int J Parasitol. 1999;29:903–14.\nMarshall AG. The ecology of ectoparasitic insects. London: Academic; 1981.\nBohonak AJ. Dispersal, gene flow, and population structure. Q Rev Biol. 1999;74:21–45.\nBlouin MS, Yowell CA, Courtney CH, Dame JB. Host movement and the genetic structure of populations of parasitic nematodes. Genetics. 1995;141:1007–14.\nCriscione CD, Cooper B, Blouin MS. Parasite genotypes identify source populations of migratory fish more accurately than fish genotypes. Ecology. 2006;87:823–8.\nAnderson RM, Gordon DM. Processes influencing the distribution of parasite numbers within host populations with special emphasis on parasite-induced host mortalities. Parasitology. 1982;85:373–98.\nThrall PH, Burdon JJ. Host-pathogen dynamics in a metapopulation context: the ecological and evolutionary consequences of being spatial. J Ecol. 1997;85:743–53.\nNieberding C, Morand S, Libois R, Michaux JR. A parasite reveals cryptic phylogeographic history of its host. Proc R Soc B Biol Sci. 2004;271:2559–68.\nNieberding CM, Durette-Desset M-C, Vanderpoorten A, Casanova JC, Ribas A, Deffontaine V, et al. Geography and host biogeography matter for understanding the phylogeography of a parasite. Mol Phylogenet Evol. 2008;47:538–54.\nMazé-Guilmo E, Blanchet S, McCoy KD, Loot G. Host dispersal as the driver of parasite genetic structure: a paradigm lost? Ecol Lett. 2016;19:336–47.\nMcCoy KD, Boulinier T, Tirard C, Michalakis Y. Host-dependant genetic structure of parasite populations: differential dispersal of seabird tick host races. Evolution. 2003;57:288–96.\nvan der Mescht L, Matthee S, Matthee CA. Comparative phylogeography between two generalist flea species reveal a complex interaction between parasite life history and host vicariance: parasite-host association matters. BMC Evol Biol. 2015;15:105.\nEngelbrecht A, Matthee S, du Toit N, Matthee CA. Limited dispersal in an ectoparasitic mite, Laelaps giganteus, contributes to significant phylogeographic congruence with the rodent host, Rhabdomys. Mol Ecol. 2016;25:1006–21.\nUsinger RL. Monograph of Cimicidae (Hemiptera, Heteroptera). Annapolis: Entomological Society of America; 1966.\nGoddard J. Bed bugs (Cimex lectularius) and clinical consequences of their bites. J Am Med Assoc. 2009;301:1358–66.\nCriado PR, Belda Junior W, Criado RFJ, Vasconcelos e Silva E, Vasconcellos C. Bedbugs (Cimicidae infestation): the worldwide renaissance of an old partner of human kind. Braz. J Infect Dis. 2011;15:74–80.\nFurlonger CL, Dewar HJ, Fenton MB. Habitat use by foraging insectivorous bats. Can J Zool. 1987;65:284–8.\nEllison LE, O’Shea TJ, Neubaum DJ, Bowen RA. Factors influencing movement probabilities of big brown bats (Eptesicus fuscus) in buildings. Ecol Appl. 2007;17:620–7.\nPearce RD, O’Shea TJ. Ectoparasites in an urban population of big brown bats (Eptesicus fuscus) in Colorado. J Parasitol. 2007;93:518–30.\nVonhof MJ, Strobeck C, Fenton MB. Genetic variation and population structure in big brown bats (Eptesicus fuscus): is female dispersal important? J Mammal. 2008;89:1411–9.\nTurmelle AS, Kunz TH, Sorenson MD. A tale of two genomes: contrasting patterns of phylogeographic structure in a widely distributed bat. Mol Ecol. 2011;20:357–75.\nBurns LE, Frasier TR, Broders HG. Genetic connectivity among swarming sites in the wide ranging and recently declining little brown bat (Myotis lucifugus). Ecol Evol. 2014;4:4130–49.\nMcLeod BA, Burns LE, Frasier TR, Broders HG. Effect of oceanic straits on gene flow in the recently endangered little brown bat (Myotis lucifugus) in maritime Canada: implications for the spread of white-nose syndrome. Can J Zool. 2015;93:427–37.\nJohnson LNL, McLeod BA, Burns LE, Arseneault K, Frasier TR, Broders HG. Population genetic structure within and among seasonal site types in the little brown bat (Myotis lucifugus) and the northern long-eared bat (M. septentrionalis). PLoS One. 2015;10:e0126309.\nVonhof MJ, Russell AL, Miller-Butterworth CM. Range-wide genetic analysis of little brown bat (Myotis lucifugus) populations: estimating the risk of spread of White-Nose Syndrome. PLoS One. 2015;10:e0128713.\nBartonička T, Růžičková L. Recolonization of bat roost by bat bugs (Cimex pipistrelli): could parasite load be a cause of bat roost switching? Parasitol Res. 2013;112:1615–22.\nTomisawa R, Akimoto S. Host range and host preference of a flea weevil, Orchestes hustachei, parasitizing aphid galls. Entomol Sci. 2004;7:21–30.\nMcCoy KD, Chapuis E, Tirard C, Boulinier T, Michalakis Y, Bohec CL, et al. Recurrent evolution of host-specialized races in a globally distributed parasite. Proc R Soc B Biol Sci. 2005;272:2389–95.\nDick CW, Patterson BD. Against all odds: explaining high host specificity in dispersal-prone parasites. Int J Parasitol. 2007;37:871–6.\nBalvín O, Vilímová J, Kratochvíl L. Batbugs (Cimex pipistrelli group, Heteroptera: Cimicidae) are morphologically, but not genetically differentiated among bat hosts. J Zool Syst Evol Res. 2013;51:287–95.\nAdam MD, Hayes JP. Use of bridges as night roosts by bats in the Oregon Coast Range. J Mammal. 2000;81:402–7.\nDixon MD. Post-Pleistocene range expansion of the recently imperiled eastern little brown bat (Myotis lucifugus lucifugus) from a single southern refugium. Ecol Evol. 2011;1:191–200.\nOlival KJ, Dick CW, Simmons NB, Morales J, Melnick DJ, Dittmar K, et al. Lack of population genetic structure and host specificity in the bat fly, Cyclopodia horsfieldi, across species of Pteropus bats in Southeast Asia. Parasit Vectors. 2013;6:231–48.\nNadin-Davis SA, Feng Y, Mousse D, Wandeler AI, Aris-Brosou S. Spatial and temporal dynamics of rabies virus variants in big brown bat populations across Canada: footprints of an emerging zoonosis. Mol Ecol. 2010;19:2120–36.\nter Hofstede HM, Fenton MB. Relationships between roost preferences, ectoparasite density, and grooming behaviour of neotropical bats. J Zool. 2005;266:333–40.\nLevy F, Neal CL. Spatial and temporal genetic structure in chloroplast and allozyme markers in Phacelia dubia implicate genetic drift. Heredity. 1999;82:422–31.\nCooper R, Wang C, Singh N. Mark-release-recapture reveals extensive movement of bed bugs (Cimex lectularius L.) within and between apartments. PLoS One. 2015;10:e0136462.\nBooth W, Balvín O, Vargo EL, Vilímová J, Schal C. Host association drives genetic divergence in the bed bug, Cimex lectularius. Mol Ecol. 2015;24:980–92.\nBalvín O, Munclinger P, Kratochvíl L, Vilímová J. Mitochondrial DNA and morphology show independent evolutionary histories of bedbug Cimex lectularius (Heteroptera: Cimicidae) on bats and humans. Parasitol Res. 2012;111:457–69.\nFountain T, Duvaux L, Horsburgh G, Reinhardt K, Butlin RK. Human-facilitated metapopulation dynamics in an emerging pest species, Cimex lectularius. Mol Ecol. 2014;23:1071–84.\nBooth W, Saenz VL, Santangelo RG, Wang C, Schal C, Vargo EL. Molecular markers reveal infestation dynamics of the bed bug (Hemiptera: Cimicidae) within apartment buildings. J Med Entomol. 2012;49:535–46.\nSaenz VL, Booth W, Schal C, Vargo EL. Genetic analysis of bed bug populations reveals small propagule size within individual infestations but high genetic diversity across infestations from the eastern United States. J Med Entomol. 2012;49:865–75.\nJames PMA, Coltman DW, Murray BW, Hamelin RC, Sperling FAH. Spatial genetic structure of a symbiotic beetle-fungal system: toward multi-taxa integrated landscape genetics. PLoS One. 2011;6:e25359.\nGrant WS. Problems and cautions with sequence Mismatch Analysis and Bayesian Skyline Plots to infer historical demography. J Hered. 2015;106:333–46.\nSwenson NG, Howard DJ. Clustering of contact zones, hybrid zones, and phylogeographic breaks in North America. Am Nat. 2005;166:581–91.\nDixon MD. Population genetic structure and natal philopatry in the widespread North American bat Myotis lucifugus. J Mammal. 2011;92:1343–51.\nHebert PDN, Cywinska A, Ball SL, deWaard JR. Biological identifications through DNA barcodes. Proc R Soc B Biol Sci. 2003;270:313–21.\nBalvín O, Roth S, Vilímová J. Molecular evidence places the swallow bug genus Oeciacus Stål within the bat and bed bug genus Cimex Linnaeus (Heteroptera: Cimicidae): The genus Oeciacus within the genus Cimex. Syst Entomol. 2015;40:652–65.\nWang J. An estimator for pairwise relatedness using molecular markers. Genetics. 2002;160:1203–15.\nFields Development Team. Fields: tools for spatial data. Boulder: National Center for Atmospheric Research; 2006.\nGoslee SC, Urban DL. The ecodist package for dissimilarity-based analysis of ecological data. J. Stat. Softw. 2007;22:1–19.\nWang J. Unbiased relatedness estimation in structured populations. Genetics. 2011;187:887–901.\nYuan M-L, Wei D-D, Zhang K, Gao Y-Z, Liu Y-H, Wang B-J, et al. Genetic diversity and population structure of Panonychus citri (Acari: Tetranychidae), in China based on mitochondrial COI gene sequences. J Econ Entomol. 2010;103:2204–13.\nPulgarín-R PC, Burg TM. Genetic signals of demographic expansion in downy woodpecker (Picoides pubescens) after the last North American glacial maximum. PLoS One. 2012;7:e40412.\nPereira L, Dupanloup I, Rosser ZH, Jobling MA, Barbujani G. Y-chromosome mismatch distributions in Europe. Mol Biol Evol. 2001;18:1259–71.\nDrummond AJ, Suchard MA. Bayesian random local clocks, or one rate to rule them all. BMC Biol. 2010;8:114.\nBrown RP, Yang Z. Rate variation and estimation of divergence times using strict and relaxed clocks. BMC Evol Biol. 2011;11:271.\nHasegawa M, Kishino H, Yano T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol. 1985;22:160–74.\nBargues MD, Klisiowicz DR, Panzera F, Noireau F, Marcilla A, Perez R, et al. Origin and phylogeography of the Chagas disease main vector Triatoma infestans based on nuclear rDNA sequences and genome size. Infect Genet Evol. 2006;6:46–62.\nBrower AV. Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proc Natl Acad Sci. 1994;91:6491–5.\nHeller R, Chikhi L, Siegismund HR. The confounding effect of population structure on Bayesian Skyline Plot inferences of demographic history. PLoS One. 2013;8:e62992.\nBertorelle G, Benazzo A, Mona S. ABC as a flexible framework to estimate demography over space and time: some cons, many pros. Mol Ecol. 2010;19:2609–25.\nChakraborty D, Sinha A, Ramakrishnan U. Mixed fortunes: ancient expansion and recent decline in population size of a subtropical montane primate, the Arunachal macaque Macaca munzala. PLoS One. 2014;9:e97061.\nZachos J. Trends, rhythms, and aberrations in global climate 65 Ma to present. Science. 2001;292:686–93.\nLombaert E, Guillemaud T, Thomas CE, Lawson Handley LJ, Li J, Wang S, et al. Inferring the origin of populations introduced from a genetically structured native range by approximate Bayesian computation: case study of the invasive ladybird Harmonia axyridis. Mol Ecol. 2011;20:4654–70.\nLi B, Kimmel M. Factors influencing ascertainment bias of microsatellite allele sizes: impact on estimates of mutation rates. Genetics. 2013;195:563–72.",{"VOID":1077},"10.1186\u002Fs12862-016-0839-1","Auto Verify","https:\u002F\u002Fbmcecolevol.biomedcentral.com\u002Farticles\u002F10.1186\u002Fs12862-016-0839-1",[1081,1096,1111,1126,1139],{"id":1082,"sortIndex":32,"researcher":28,"roles":1083,"affiliations":1084,"properties":1093,"displayName":1095,"givenName":28,"familyName":28},"f87f86be-9c38-41c2-aa16-5238a8dd8437",[962],[1085],{"id":1086,"sortIndex":32,"affiliation":1087,"properties":28},"3074a545-87be-4b81-835f-4c086089b5bc",{"id":1086,"createTime":28,"updateTime":28,"relativeEntities":1088,"slug":28,"properties":1089,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1092,"statistic":28},[],{"title":1090},{"VI":1091},"Department of Biology, University of Western Ontario, London, Canada",[],{"title":1094},{"VI":1095},"Benoit Talbot",{"id":1097,"sortIndex":40,"researcher":28,"roles":1098,"affiliations":1099,"properties":1108,"displayName":1110,"givenName":28,"familyName":28},"5a86135e-909f-4aaf-b45a-a753ad87a3a3",[962],[1100],{"id":1101,"sortIndex":32,"affiliation":1102,"properties":28},"c30a0cb6-2092-4736-92e2-0622265f29f8",{"id":1101,"createTime":28,"updateTime":28,"relativeEntities":1103,"slug":28,"properties":1104,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1107,"statistic":28},[],{"title":1105},{"VI":1106},"Department of Biological Sciences, Western Michigan University, Kalamazoo, USA",[],{"title":1109},{"VI":1110},"Maarten J. Vonhof",{"id":1112,"sortIndex":123,"researcher":28,"roles":1113,"affiliations":1114,"properties":1123,"displayName":1125,"givenName":28,"familyName":28},"03c271d2-0914-4026-a4fb-9ddc2fd7e567",[962],[1115],{"id":1116,"sortIndex":32,"affiliation":1117,"properties":28},"2e105355-08cd-4805-8923-77d5776a4de6",{"id":1116,"createTime":28,"updateTime":28,"relativeEntities":1118,"slug":28,"properties":1119,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1122,"statistic":28},[],{"title":1120},{"VI":1121},"Department of Biology, Saint Mary’s University, Halifax, Canada",[],{"title":1124},{"VI":1125},"Hugh G. Broders",{"id":1127,"sortIndex":42,"researcher":28,"roles":1128,"affiliations":1129,"properties":1136,"displayName":1138,"givenName":28,"familyName":28},"4dc5c24e-4e55-4cce-9245-840938e47a65",[962],[1130],{"id":1086,"sortIndex":32,"affiliation":1131,"properties":28},{"id":1086,"createTime":28,"updateTime":28,"relativeEntities":1132,"slug":28,"properties":1133,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1135,"statistic":28},[],{"title":1134},{"VI":1091},[],{"title":1137},{"VI":1138},"Brock Fenton",{"id":1140,"sortIndex":45,"researcher":28,"roles":1141,"affiliations":1142,"properties":1149,"displayName":1151,"givenName":28,"familyName":28},"eb11352d-3bc1-4927-a454-a555f5d1edfd",[962],[1143],{"id":1086,"sortIndex":32,"affiliation":1144,"properties":28},{"id":1086,"createTime":28,"updateTime":28,"relativeEntities":1145,"slug":28,"properties":1146,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1148,"statistic":28},[],{"title":1147},{"VI":1091},[],{"title":1150},{"VI":1151},"Nusha Keyghobadi",{"url":1079,"publisher":1153,"properties":1172},{"id":868,"createTime":869,"updateTime":870,"relativeEntities":1154,"slug":872,"properties":1155,"entityType":25,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":32,"subjectFields":1158,"manageAffiliations":1159,"indexDatabases":1160,"url":28,"thumbnailPath":28,"statistic":1167,"gsStatistic":28,"type":28,"analyzePriority":28},[],{"title":1156,"eissn":1157},{"EN":875},{"VOID":877},[],[],[1161],{"id":883,"indexDatabase":1162,"url":889,"indexYears":890,"academicFieldIds":28,"indexDatabaseRanking":891},{"id":775,"createTime":28,"updateTime":28,"relativeEntities":1163,"label":1164,"description":1165,"key":781,"publicationTags":1166,"standard":28},[],{"EN":778,"VI":778},{"EN":778,"VI":780},[783],{"impactFactor":32,"impactFactorByYear":1168,"i10Index":903,"i10IndexLast5Year":140,"totalPublication":595,"totalPublicationByYear":1169,"totalCitation":905,"totalCitationByYear":1170,"totalCitationPerPublication":923,"totalCitationPerPublicationByYear":1171,"hindexLast5Year":688,"hindex":688},{"2012":894,"2013":895,"2014":896,"2015":593,"2016":897,"2017":898,"2018":899,"2019":900,"2020":901,"2021":902,"2022":42},{"2005":49,"2006":45,"2007":47,"2008":147,"2009":323,"2010":128,"2011":196,"2012":122,"2013":146,"2014":131,"2015":152,"2016":148,"2017":137,"2018":136,"2019":352,"2020":122},{"2005":907,"2006":908,"2007":909,"2008":910,"2009":911,"2010":912,"2011":913,"2012":914,"2013":915,"2014":916,"2015":917,"2016":918,"2017":919,"2018":920,"2019":921,"2020":922},{"2005":925,"2006":361,"2007":926,"2008":927,"2009":928,"2010":929,"2011":930,"2012":931,"2013":932,"2014":140,"2015":933,"2016":934,"2017":935,"2018":936,"2019":937,"2020":938},{"pages":1173,"volume":1175},{"VOID":1174},"1-13",{"VOID":1176},"16","2016-12-07",2016,[891],{"id":1181,"createTime":1182,"updateTime":1183,"relativeEntities":1184,"slug":1185,"properties":1186,"entityType":956,"verifyStatus":26,"verifyTime":1199,"verifyNote":1078,"languages":28,"translateLanguages":1200,"viewCount":32,"primaryUrl":1201,"fullTextUrl":28,"authors":1202,"publicationType":1033,"publisherRelationship":1340,"citationCount":28,"citationInfo":28,"publishDate":1365,"publishYear":1366,"citationAnalyzeStatus":878,"lastCitationAnalyze":28,"indexDatabases":1367,"openAccess":28,"references":28,"isForceReanalyzing":1062},"00209a6d-4527-4cb2-9aeb-c32216d6646d","2024-02-14T07:45:10.385+00:00","2025-01-17T23:18:10.426+00:00",[],"Dynamic-evolution-of-the-alpha-%CE%B1-and-beta-%CE%B2-keratins-has-accompanied-integument-diversification-and-the-adaptation-of-birds-into-novel-lifestyles",{"abstract":1187,"title":1190,"keywords":1193,"references":1195,"doi":1197},{"EN":1188,"VI":1189},"Vertebrate skin appendages are constructed of keratins produced by multigene families. Alpha (α) keratins are found in all vertebrates, while beta (β) keratins are found exclusively in reptiles and birds. We have studied the molecular evolution of these gene families in the genomes of 48 phylogenetically diverse birds and their expression in the scales and feathers of the chicken. We found that the total number of α-keratins is lower in birds than mammals and non-avian reptiles, yet two α-keratin genes (KRT42 and KRT75) have expanded in birds. The β-keratins, however, demonstrate a dynamic evolution associated with avian lifestyle. The avian specific feather β-keratins comprise a large majority of the total number of β-keratins, but independently derived lineages of aquatic and predatory birds have smaller proportions of feather β-keratin genes and larger proportions of keratinocyte β-keratin genes. Additionally, birds of prey have a larger proportion of claw β-keratins. Analysis of α- and β-keratin expression during development of chicken scales and feathers demonstrates that while α-keratins are expressed in these tissues, the number and magnitude of expressed β-keratin genes far exceeds that of α-keratins. These results support the view that the number of α- and β-keratin genes expressed, the proportion of the β-keratin subfamily genes expressed and the diversification of the β-keratin genes have been important for the evolution of the feather and the adaptation of birds into multiple ecological niches.","Các phần phụ của da động vật có xương sống được cấu tạo từ keratin do các gia đình gen đa dạng sản xuất. Keratin alpha (α) có mặt ở tất cả các loài động vật có xương sống, trong khi keratin beta (β) chỉ xuất hiện ở bò sát và chim. Chúng tôi đã nghiên cứu sự tiến hóa phân tử của các gia đình gen này trong bộ gen của 48 loài chim có mối quan hệ phát sinh chủng loài đa dạng và sự biểu hiện của chúng trong vảy và lông của gà. Chúng tôi phát hiện ra rằng tổng số α-keratin thấp hơn ở chim so với động vật có vú và bò sát không phải chim, tuy nhiên, hai gen α-keratin (KRT42 và KRT75) đã mở rộng ở chim. Ngược lại, các β-keratin cho thấy sự tiến hóa năng động liên quan đến phong cách sống của chim. Các β-keratin dựa riêng vào lông chim chiếm một phần lớn tổng số β-keratin, nhưng các nhánh có nguồn gốc độc lập của chim nước và chim ăn thịt có tỷ lệ gen β-keratin lông nhỏ hơn và tỷ lệ gen β-keratin keratinocyte lớn hơn. Thêm vào đó, các loài chim săn mồi có tỷ lệ cao hơn cho β-keratin móng vuốt. Phân tích sự biểu hiện của gen α- và β-keratin trong quá trình phát triển của vảy và lông gà cho thấy trong khi α-keratin được biểu hiện trong các mô này, số lượng và quy mô của các gen β-keratin được biểu hiện vượt xa α-keratin. Những kết quả này hỗ trợ quan điểm rằng số lượng gen α- và β-keratin được biểu hiện, tỷ lệ các gen β-keratin được biểu hiện và sự đa dạng của các gen β-keratin đã đóng vai trò quan trọng trong sự tiến hóa của lông chim và sự thích nghi của chim vào nhiều môi trường sinh thái khác nhau.",{"EN":1191,"VI":1192},"Dynamic evolution of the alpha (α) and beta (β) keratins has accompanied integument diversification and the adaptation of birds into novel lifestyles","Evolutions động của keratin alpha (α) và beta (β) đồng hành với sự đa dạng của lớp biểu bì và sự thích nghi của chim với các lối sống mới",{"VI":1194},"keratin alpha, keratin beta, tiến hóa phân tử, lớp biểu bì, thích nghi sinh thái, chim",{"VOID":1196},"Gill FB: Ornithology. 1995, W.H. Freeman and Company, New York\nBell E, Thathachari YT: Development of feather keratin during embryogenesis of the chick. J Cell Biol. 1963, 16 (2): 215-223. 10.1083\u002Fjcb.16.2.215.\nBaden HP, Maderson PFA: Morphological and biophysical identification of fibrous proteins in the amniote epidermis. J Exp Zool. 1970, 174: 225-232. 10.1002\u002Fjez.1401740211.\nHaake AR, Kӧnig G, Sawyer RH: Avian feather development: relationships between morphogenesis and keratinization. Dev Biol. 1984, 106: 406-413. 10.1016\u002F0012-1606(84)90240-9.\nRogers GE: Gene for hair and avian keratins. Ann N Y Acad Sci. 1985, 455: 403-425. 10.1111\u002Fj.1749-6632.1985.tb50425.x.\nBereiter-Hahn J, Matoltsy AG, Richards KS: Biology of the Integument 2 Vertebrates. 1986, Springer-Verlag, Berlin\nVandebergh W, Bossuyt F: Radiation and functional diversification of alpha keratins during early vertebrate evolution. Mol Biol Evol. 2012, 29 (3): 995-1004. 10.1093\u002Fmolbev\u002Fmsr269.\nGreenwold MJ, Sawyer RH: Genomic organization and molecular phylogenies of the beta (β) keratin multigene family in the chicken (Gallus gallus) and zebra finch (Taeniopygia guttata): implications for feather evolution. BMC Evol Biol. 2010, 10: 148-10.1186\u002F1471-2148-10-148.\nGreenwold MJ, Sawyer RH: Molecular evolution and expression of archosaurian β-keratins: Diversification and expansion of archosaurian β-keratins and the origin of feather β-keratins. J Exp Zool (Mol Dev Evol). 2013, 320B: 393-405. 10.1002\u002Fjez.b.22514.\nLi YI, Kong L, Ponting CP, Haerty W: Rapid evolution of beta-keratin genes contribute to phenotypic differences that distinguish turtles and birds from other reptiles. Genome Biol Evol. 2013, 5 (5): 923-933. 10.1093\u002Fgbe\u002Fevt060.\nLee LD, Baden HP: Organization of the polypeptide chains in mammalian keratin. Nature. 1976, 264: 377-379. 10.1038\u002F264377a0.\nHatzfeld M, Franke WW: Pair formation and promiscuity of cytokeratins: formation in vitro of heterotypic complexes and intermediate-sized filaments by homologous and heterologous recombinations of purified polypeptides. J Cell Biol. 1985, 101: 1826-1841. 10.1083\u002Fjcb.101.5.1826.\nFuchs E, Marchuk D: Type I and type II keratins have evolved from lower eukaryotes to form the epidermal intermediate filaments in mammalian skin. Proc Natl Acad Sci U S A. 1983, 80: 5857-5861. 10.1073\u002Fpnas.80.19.5857.\nRice RH, Winters BR, Durbin-Johnson BP, Rocke DM: Chicken corneocyte cross-linked proteome. J Proteome Res. 2012, 12: 771-776. 10.1021\u002Fpr301036k.\nO’Guin MW, Sawyer RH: Avian scale development: VIII. Relationships between morphogenetic and biosynthetic differentiation. Dev Biol. 1982, 89: 485-492. 10.1016\u002F0012-1606(82)90336-0.\nSawyer RH, Knapp LW, O’Guin WM: Epidermis, Dermis and Appendages. Biology of the Integument 2 Vertebrates. Edited by: Bereiter-Hahn J, Matoltsy AG, Richards KS. 1986, Springer-Verlag, Berlin, 194-238. 10.1007\u002F978-3-662-00989-5_11.\nSmoak DK, Sawyer RH: Avian spur development: abnormal morphogenesis and Keratinization in the Scaleless (sc\u002Fsc) mutant. Trans Am Microsc Soc. 1983, 102 (2): 135-144. 10.2307\u002F3225883.\nCarver WE, Sawyer RH: Avian scale development: XI. Immunoelectron microscopic localization of α and β Keratins in the Scutate Scale. J Morphol. 1988, 195: 31-43. 10.1002\u002Fjmor.1051950104.\nShames RB, Knapp LW, Carver WE, Washington LD, Sawyer RH: Keratinization of the outer surface of the avian scutate scale: interrelationship of alpha and beta keratin filaments in a cornifying tissue. Cell Tissue Res. 1989, 257: 85-92. 10.1007\u002FBF00221637.\nCarver WE, Sawyer RH: Immunocytochemical localization and biochemical analysis of α and β keratins in the avian lingual epithelium. Am J Anat. 1989, 184: 66-75. 10.1002\u002Faja.1001840108.\nKnapp LW, Shames RB, Barnes GL, Sawyer RH: Region-specific patterns of beta keratin expression during avian skin development. Dev Dyn. 1993, 196: 283-290. 10.1002\u002Faja.1001960411.\nNg CS, Wu P, Foley J, Foley A, McDonald M, Juan W, Huang C, Lai Y, Lo W, Chen C, Leal SM, Zhang H, Widelitz RB, Patel PI, Li W, Chuong C: The chicken frizzle feather is due to an α-keratin (KRT75) mutation that causes a defective rachis. PLoS Genet. 2012, 8 (7): e1002748-10.1371\u002Fjournal.pgen.1002748.\nWalker ID, Rogers GE: Differentiation in Avian Keratinocytes. Eur J Biochem. 1976, 69: 329-339. 10.1111\u002Fj.1432-1033.1976.tb10917.x.\nWalker ID, Rogers GE: The structural basis for the heterogeneity of chick down feather keratin. Eur J Biochem. 1976, 69: 341-350. 10.1111\u002Fj.1432-1033.1976.tb10918.x.\nPowell BC, Rogers GE: Isolation of messenger RNA coding for the “fast” protein of embryonic chick feathers. Nucleic Acids Res. 1979, 8: 2165-2176. 10.1093\u002Fnar\u002F7.8.2165.\nAlibardi L, Sawyer RH: Cell structure of developing down feathers in the zebrafinch with emphasis on barb ridge morphogenesis. J Anat. 2006, 208 (5): 621-642. 10.1111\u002Fj.1469-7580.2006.00580.x.\nAlibardi L: Immunolocalization of alpha-keratins and feather beta-keratins in feather cells and comparison with the general process of cornification in the skin of mammals. Ann Anat. 2013, 195: 189-198. 10.1016\u002Fj.aanat.2012.08.005.\nKowata K, Nakaoka M, Nishio K, Fukao A, Satoh A, Ogoshi M, Takahashi S, Tsudzuki M, Takeuchi S: Identification of a feather β-keratin gene exclusively expressed in pennaceous barbule cells of contour feathers in chicken. Gene. 2014, 542: 23-28. 10.1016\u002Fj.gene.2014.03.027.\nPresland RB, Gregg K, Molloy PL, Morris CP, Crocker LA, Rogers GE: Avian keratin genes I: a molecular analysis of the structure and expression of a group of feather keratin genes. J Mol Biol. 1989, 209: 549-559. 10.1016\u002F0022-2836(89)90593-7.\nPresland RB, Whitbread LA, Rogers GE: Avian keratin genes II: chromosomal arrangement and close linkage of three gene families. J Mol Biol. 1989, 209: 561-576. 10.1016\u002F0022-2836(89)90594-9.\nWhitbread LA, Gregg K, Rogers GE: The structure and expression of a gene encoding chick claw keratin. Gene. 1991, 101: 223-229. 10.1016\u002F0378-1119(91)90415-8.\nVanhoutteghem A, Londero T, Djian P, Ghinea N: Serial cultivation of chicken keratinocytes, a composite cell type that accumulates lipids and synthesizes a novel β-keratin. Differentiation. 2004, 72 (4): 123-137. 10.1111\u002Fj.1432-0436.2004.07204002.x.\nDalla Valle L, Nardi A, Gelmi C, Toni M, Emera D, Alibardi L: β-Keratins of the Crocodilian epidermis: composition, structure, and phylogenetic relationships. J Exp Zool (Mol Dev Evol). 2009, 312B: 42-57. 10.1002\u002Fjez.b.21241.\nDalla Valle L, Nardi A, Toni M, Emera D, Alibardi L: Beta-keratins of turtle shell are glycine-proline-tyrosine rich proteins similar to those of crocodilians and birds. J Anat. 2009, 214: 284-300. 10.1111\u002Fj.1469-7580.2008.01030.x.\nDalla Valle L, Nardi A, Bonazza G, Zuccal C, Emera D, Alibardi L: Forty keratin associated β-proteins (β-keratins) form the hard layers of scales, claws, and adhesive pads in the green anole lizard, Anolis. J Exp Zool (Mol Dev Evol). 2010, 314B: 11-32. 10.1002\u002Fjez.b.21306.\nGreenwold MJ, Sawyer RH: Linking the molecular evolution of avian beta (β) keratins to the evolution of feathers. J Exp Zool (Mol Dev Evol). 2011, 316: 609-616. 10.1002\u002Fjez.b.21436.\nHartl M, Bister K: Specific activation in jun-transformed avian fibroblasts of a gene (bkj) related to the avian β-keratin gene family. Proc Natl Acad Sci U S A. 1995, 92: 11731-11735. 10.1073\u002Fpnas.92.25.11731.\nHesse M, Zimek A, Weber K, Magin TM: Comprehensive analysis of keratin gene clusters in humans and rodents. Eur J Cell Biol. 2004, 83: 19-26. 10.1078\u002F0171-9335-00354.\nZimek A, Weber K: Terrestrial vertebrates have two keratin gene clusters; striking differences in teleost fish. Eur J Cell Biol. 2005, 84: 623-635. 10.1016\u002Fj.ejcb.2005.01.007.\nAlföldi J, Di Palma F, Grabherr M, Williams C, Kong L, Mauceli E, Russell P, Lowe CB, Glor R, Jaffe JD, Ray DA, Boissinot S, Botka C, Castoe T, Colbourne JK, Fujita MK, Moreno GR, ten Hallers BF, Haussler D, Heger A, Heiman D, Janes DE, Johnson J, de Jong PJ, Koriabine MY, Novick P, Organ CL, Peach SE, Poe S, Pollack DD, et al: The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature. 2011, 477: 587-591. 10.1038\u002Fnature10390.\nZhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Yu H, Lian J, Wen P, Zhang F, Li H, et al: Comparative genomics across modern bird species reveal insights into avian genome evolution and adaptation. Submitted to Science 2014\nJarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SYW, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, et al: Whole genome analyses resolve the early branches in the tree of life of modern birds. In press Science 2014\nSt John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed’Hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, Drew JC, Edwards SV, Faircloth BC, Fujita MK, Greenwold MJ, Hoffmann FG, Howard JM, Iguchi T, Janes DE, Khan SY, Kohno S, de Koning AP J, Lance SL, McCarthy FM, McCormack JE, et al: Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biol. 2012, 13: 415-10.1186\u002Fgb-2012-13-1-415.\nWang Z, Pascual-Anaya J, Zadissa A, Li W, Niimura Y, Huang Z, Li C, White S, Xiong Z, Fang D, Wang B, Ming Y, Chen Y, Zheng Y, Kuraku S, Pignatelli M, Herrero J, Beal K, Nozawa M, Li Q, Wang J, Zhang H, Yu L, Shigenobu S, Wang J, Liu J, Flicek P, Searle S, Wang J, Kuratani S, et al: The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan. Nat Genet. 2013, 45 (6): 701-706. 10.1038\u002Fng.2615.\nSchweizer J, Bowden PE, Coulombe PA, Langbein L, Lane EB, Magin TM, Maltais L, Omary MB, Parry DAD, Rogers MA, Wright MW: New consensus nomenclature for mammalian keratins. J Cell Biol. 2006, 174 (2): 169-174. 10.1083\u002Fjcb.200603161.\nMoll R, Divo M, Langbein L: The human keratins: biology and pathology. Histochem Cell Biol. 2008, 129 (6): 705-733. 10.1007\u002Fs00418-008-0435-6.\nHeller S, Sheane CA, Javed Z, Hudspeth AJ: Molecular markers for cell types of the inner ear and candidate genes for hearing disorders. Proc Natl Acad Sci U S A. 1998, 95: 11400-11405. 10.1073\u002Fpnas.95.19.11400.\nLandauer W, Dunn LC: The “frizzle” character of fowls, its expression and inheritance. J Hered. 1930, 21: 290-305.\nBlumenberg M: Concerted gene duplications in the two keratin gene families. J Mol Evol. 1988, 27: 203-211. 10.1007\u002FBF02100075.\nLi X, Chiang H, Zhu J, Dowd SE, Zhou H: Characterization of a newly developed chicken 44 K Agilent microarray. BMC Genomics. 2008, 9: 60-10.1186\u002F1471-2164-9-60.\nLucas AM, Stettenheim PR: Avian Anatomy – Integument. Agricultural Handbook 362. 1972, Agricultural Research Services: US Department of Agriculture, Washington DC\nSengel P: Morphogenesis of skin. 1976, Cambridge University Press, Cambridge\nSawyer RH: Avian scale development. I. Histogenesis and morphogenesis of the epidermis and dermis during formation of the scale ridge. J Exp Zool. 1972, 181: 365-383. 10.1002\u002Fjez.1401810307.\nSawyer RH, Fallon JF: Epithelial-mesenchymal interactions in development. 1983, Praeger Publishers, New York\nShames RB, Sawyer RH: Expression of β-keratin genes during skin development in normal and sc\u002Fsc chick embryos. Dev Biol. 1986, 116 (1): 15-22. 10.1016\u002F0012-1606(86)90038-2.\nShames RB, Sawyer RH: Chapter 11, Expression of β-keratin Genes during Development of Avian Skin Appendages. Current Topics in Developmental Biology. Edited by: Moscona AA, Monroy A. 1987, Academic Press, Inc, New York, 235-253.\nNg CS, Wu P, Fan W, Yan J, Chen C, Lai Y, Wu S, Mao C, Chen J, Lu MJ, Ho M, Widelitz RB, Chen C, Chuong C, Li W: Genomic organization, transcriptomics analysis, and functional characterization of avian α- and β-keratins in diverse feather forms. Genome Biol Evol 2014, doi:10.1093\u002Fgbe\u002Fevu181.,\nBurt A, Bell G: Mammalian chiasma frequencies as a test of two theories of recombination. Nature. 1987, 326: 803-805. 10.1038\u002F326803a0.\nRoss-Ibarra J: The evolution of recombination under domestication: a test of two hypotheses. Am Nat. 2004, 163: 105-112. 10.1086\u002F380606.\nKemp DJ, Rogers GE: Differentiation of avian keratinocytes. Characterization and relations of the keratin proteins of adult and embryonic feathers and scales. Biochemistry. 1972, 11 (6): 969-975. 10.1021\u002Fbi00756a005.\nWalker ID, Bridgen J: The Keratin Chains of avian scale tissue. Eur J Biochem. 1976, 67: 283-293. 10.1111\u002Fj.1432-1033.1976.tb10660.x.\nKemp DJ: Unique and repetitive sequences in multiple genes for feather keratin. Nature. 1975, 254: 573-577. 10.1038\u002F254573a0.\nGregg K, Rogers GE: Feather Keratin: Composition, Structure, and Biogenesis. Biology of the Integument, Vol. 2. Vertebrates. Edited by: Bereiter-Hahn J, Maltotsy AG, Richards KS. 1986, Springer-Verlag, New York, 666-694. 10.1007\u002F978-3-662-00989-5_33.\nShames RB, Knapp LW, Carver WE, Sawyer RH: Identification, expression, and localization of β keratin gene products during development of avian scutate scales. Differentiation. 1988, 38 (2): 115-123. 10.1111\u002Fj.1432-0436.1988.tb00205.x.\nKnapp LW, Linser PJ, Carver WE, Sawyer RH: Biochemical identification and immunological localization of two non-keratin polypeptides associated with the terminal differentiation of avian scale epidermis. Cell Tissue Res. 1991, 265 (3): 535-545. 10.1007\u002FBF00340877.\nZhang L, Nie Q, Su Y, Xie X, Luo W, Jia X, Zhang X: MicroRNA profile analysis on duck feather follicle and skin with high-throughput sequencing technology. Gene. 2013, 519: 77-81. 10.1016\u002Fj.gene.2013.01.043.\nCsermely D, Rossi O: Bird claws and bird of prey talons: where is the difference?. Ital J Zool. 2006, 73: 43-53. 10.1080\u002F11250000500502368.\nFowler DW, Freedman EA, Scannella JB: Predatory functional morphology in raptors: interdigital variation in talon size is related to prey restraint and immobilisation technique. PLoS ONE. 2009, 4 (11): e7999-10.1371\u002Fjournal.pone.0007999.\nBirn-Jeffery AV, Miller CE, Naish D, Rayfield EJ, Hone DWE: Pedal claw curvature in birds, lizards and mesozoi dinosaurs – complicated categories and compensating for mass-specific and phylogenetic control. PLoS ONE. 2012, 7 (12): e50555-10.1371\u002Fjournal.pone.0050555.\nWu P, Jiang T, Suksaweang S, Widelitz RB, Chuong C: Molecular shaping of the beak. Science. 2004, 305: 1465-1466. 10.1126\u002Fscience.1098109.\nRijke AM: Wettability and phylogenetic development of feather structure in water birds. J Exp Biol. 1970, 52: 469-479.\nO’Donnell IJ, Inglis AS: Amino acid sequence of a feather keratin from Silver Gull (Larus novae-hollandiae) and comparison with one from Emu (Dromaius novae-hollandiae). Aust J Biol Sci. 1974, 27: 369-382.\nShedlock AM, Edwards SV: Amniotes (Amniota). The Timetree of Life. Edited by: Hedges SB, Kumar S. 2009, Oxford Univ. Press, New York, 375-379.\nKent JW: BLAT-The BLAST-like alignment tool. Genome Res. 2002, 12: 656-664. 10.1101\u002Fgr.229202. Article published online before March 2002.\nBirney E, Clamp M, Durbin R: GeneWise and Genomewise. Genome Res. 2004, 14: 988-995. 10.1101\u002Fgr.1865504.\nGarland T, Dickerman AW, Janis CM, Jones JA: Phylogenetic analysis of covariance by computer simulation. Syst Biol. 1993, 42 (3): 265-292. 10.1093\u002Fsysbio\u002F42.3.265.\nHarmon LJ, Weir JT, Brock CD, Glor RE, Challenger W: GEIGER: investigating evolutionary radiations. Bioinformatics. 2008, 24: 129-131. 10.1093\u002Fbioinformatics\u002Fbtm538.\nStamatakis A: RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 2006, 22 (21): 2688-2690. 10.1093\u002Fbioinformatics\u002Fbtl446.\nAbascal F, Zardoya R, Posada D: ProtTest: selection of best-fit models of protein evolution. Bioinformatics. 2005, 21 (9): 2104-2105. 10.1093\u002Fbioinformatics\u002Fbti263.\nLarkin MA, Blackshields G, Bown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG: Clustal W and Clustal X version 2.0. Bioinformatics. 2007, 23: 2947-2948. 10.1093\u002Fbioinformatics\u002Fbtm404.",{"VOID":1198},"10.1186\u002Fs12862-014-0249-1","2025-01-14T01:28:45.934+00:00",[30],"https:\u002F\u002Fbmcecolevol.biomedcentral.com\u002Farticles\u002F10.1186\u002Fs12862-014-0249-1",[1203,1218,1231,1246,1261,1283,1305,1327],{"id":1204,"sortIndex":32,"researcher":28,"roles":1205,"affiliations":1206,"properties":1215,"displayName":1217,"givenName":28,"familyName":28},"1cbdeaab-7cdf-4e27-9e94-29725d935bf5",[962],[1207],{"id":1208,"sortIndex":32,"affiliation":1209,"properties":28},"16d28672-8fbe-4a55-8301-edc399791555",{"id":1208,"createTime":28,"updateTime":28,"relativeEntities":1210,"slug":28,"properties":1211,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1214,"statistic":28},[],{"title":1212},{"EN":1213},"Department of Biological Sciences, University of South Carolina, Columbia, USA.",[],{"title":1216},{"VI":1217},"Matthew J Greenwold",{"id":1219,"sortIndex":40,"researcher":28,"roles":1220,"affiliations":1221,"properties":1228,"displayName":1230,"givenName":28,"familyName":28},"3224980d-d351-4f8c-9d18-3b42ee092418",[962],[1222],{"id":1208,"sortIndex":32,"affiliation":1223,"properties":28},{"id":1208,"createTime":28,"updateTime":28,"relativeEntities":1224,"slug":28,"properties":1225,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1227,"statistic":28},[],{"title":1226},{"EN":1213},[],{"title":1229},{"VI":1230},"Weier Bao",{"id":1232,"sortIndex":123,"researcher":28,"roles":1233,"affiliations":1234,"properties":1243,"displayName":1245,"givenName":28,"familyName":28},"15a61caf-63d1-4957-9780-f818591df7ef",[962],[1235],{"id":1236,"sortIndex":32,"affiliation":1237,"properties":28},"f8f63c06-420c-4f1b-8146-d42be906072e",{"id":1236,"createTime":28,"updateTime":28,"relativeEntities":1238,"slug":28,"properties":1239,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1242,"statistic":28},[],{"title":1240},{"VI":1241},"Department of Neurobiology, Howard Hughes Medical Institute and Duke University Medical Center, Durham, USA",[],{"title":1244},{"VI":1245},"Erich D Jarvis",{"id":1247,"sortIndex":42,"researcher":28,"roles":1248,"affiliations":1249,"properties":1258,"displayName":1260,"givenName":28,"familyName":28},"08a9008c-3466-40fa-9f5c-9ab35451024e",[962],[1250],{"id":1251,"sortIndex":32,"affiliation":1252,"properties":28},"ba063415-a745-4a70-8275-6c03b6f342cb",{"id":1251,"createTime":28,"updateTime":28,"relativeEntities":1253,"slug":28,"properties":1254,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1257,"statistic":28},[],{"title":1255},{"VI":1256},"China National GeneBank, BGI-Shenzhen, Shenzhen, China",[],{"title":1259},{"VI":1260},"Haofu Hu",{"id":1262,"sortIndex":45,"researcher":28,"roles":1263,"affiliations":1264,"properties":1280,"displayName":1282,"givenName":28,"familyName":28},"77bcf19a-d892-4582-9a57-bf1cb31dc350",[962],[1265,1271],{"id":1251,"sortIndex":32,"affiliation":1266,"properties":28},{"id":1251,"createTime":28,"updateTime":28,"relativeEntities":1267,"slug":28,"properties":1268,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1270,"statistic":28},[],{"title":1269},{"VI":1256},[],{"id":1272,"sortIndex":40,"affiliation":1273,"properties":1279},"40057ad2-a3ee-4b9f-871d-db8cab1ea1ea",{"id":1272,"createTime":28,"updateTime":28,"relativeEntities":1274,"slug":28,"properties":1275,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1278,"statistic":28},[],{"title":1276},{"VI":1277},"Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark",[],{},{"title":1281},{"VI":1282},"Cai Li",{"id":1284,"sortIndex":46,"researcher":28,"roles":1285,"affiliations":1286,"properties":1302,"displayName":1304,"givenName":28,"familyName":28},"554d0bd4-fe57-4d7a-9ecb-cc384d738a3e",[962],[1287,1293],{"id":1272,"sortIndex":32,"affiliation":1288,"properties":28},{"id":1272,"createTime":28,"updateTime":28,"relativeEntities":1289,"slug":28,"properties":1290,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1292,"statistic":28},[],{"title":1291},{"VI":1277},[],{"id":1294,"sortIndex":40,"affiliation":1295,"properties":1301},"689bcae3-b970-41a3-9b70-9a6da7f90f24",{"id":1294,"createTime":28,"updateTime":28,"relativeEntities":1296,"slug":28,"properties":1297,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1300,"statistic":28},[],{"title":1298},{"VI":1299},"Trace and Environmental DNA Laboratory, Department of Environment and Agriculture, Curtin University, Perth, Australia",[],{},{"title":1303},{"VI":1304},"M Thomas P Gilbert",{"id":1306,"sortIndex":48,"researcher":28,"roles":1307,"affiliations":1308,"properties":1324,"displayName":1326,"givenName":28,"familyName":28},"fd20ca25-bab5-4b5f-b9ef-926fce91b718",[962],[1309,1315],{"id":1251,"sortIndex":32,"affiliation":1310,"properties":28},{"id":1251,"createTime":28,"updateTime":28,"relativeEntities":1311,"slug":28,"properties":1312,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1314,"statistic":28},[],{"title":1313},{"VI":1256},[],{"id":1316,"sortIndex":40,"affiliation":1317,"properties":1323},"44a8c691-3805-4892-b4df-ffdaf59eea43",{"id":1316,"createTime":28,"updateTime":28,"relativeEntities":1318,"slug":28,"properties":1319,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1322,"statistic":28},[],{"title":1320},{"VI":1321},"Centre for Social Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark",[],{},{"title":1325},{"VI":1326},"Guojie Zhang",{"id":1328,"sortIndex":49,"researcher":28,"roles":1329,"affiliations":1330,"properties":1337,"displayName":1339,"givenName":28,"familyName":28},"0c111898-a9d8-4b54-81f0-5b02964008d8",[962],[1331],{"id":1208,"sortIndex":32,"affiliation":1332,"properties":28},{"id":1208,"createTime":28,"updateTime":28,"relativeEntities":1333,"slug":28,"properties":1334,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1336,"statistic":28},[],{"title":1335},{"EN":1213},[],{"title":1338},{"VI":1339},"Roger H Sawyer",{"url":1201,"publisher":1341,"properties":1360},{"id":868,"createTime":869,"updateTime":870,"relativeEntities":1342,"slug":872,"properties":1343,"entityType":25,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":32,"subjectFields":1346,"manageAffiliations":1347,"indexDatabases":1348,"url":28,"thumbnailPath":28,"statistic":1355,"gsStatistic":28,"type":28,"analyzePriority":28},[],{"title":1344,"eissn":1345},{"EN":875},{"VOID":877},[],[],[1349],{"id":883,"indexDatabase":1350,"url":889,"indexYears":890,"academicFieldIds":28,"indexDatabaseRanking":891},{"id":775,"createTime":28,"updateTime":28,"relativeEntities":1351,"label":1352,"description":1353,"key":781,"publicationTags":1354,"standard":28},[],{"EN":778,"VI":778},{"EN":778,"VI":780},[783],{"impactFactor":32,"impactFactorByYear":1356,"i10Index":903,"i10IndexLast5Year":140,"totalPublication":595,"totalPublicationByYear":1357,"totalCitation":905,"totalCitationByYear":1358,"totalCitationPerPublication":923,"totalCitationPerPublicationByYear":1359,"hindexLast5Year":688,"hindex":688},{"2012":894,"2013":895,"2014":896,"2015":593,"2016":897,"2017":898,"2018":899,"2019":900,"2020":901,"2021":902,"2022":42},{"2005":49,"2006":45,"2007":47,"2008":147,"2009":323,"2010":128,"2011":196,"2012":122,"2013":146,"2014":131,"2015":152,"2016":148,"2017":137,"2018":136,"2019":352,"2020":122},{"2005":907,"2006":908,"2007":909,"2008":910,"2009":911,"2010":912,"2011":913,"2012":914,"2013":915,"2014":916,"2015":917,"2016":918,"2017":919,"2018":920,"2019":921,"2020":922},{"2005":925,"2006":361,"2007":926,"2008":927,"2009":928,"2010":929,"2011":930,"2012":931,"2013":932,"2014":140,"2015":933,"2016":934,"2017":935,"2018":936,"2019":937,"2020":938},{"pages":1361,"volume":1363},{"VOID":1362},"1-16",{"VOID":1364},"14","2014-12-12",2014,[891],{"id":1369,"createTime":1370,"updateTime":1371,"relativeEntities":1372,"slug":1373,"properties":1374,"entityType":956,"verifyStatus":26,"verifyTime":1371,"verifyNote":1078,"languages":28,"translateLanguages":28,"viewCount":32,"primaryUrl":1383,"fullTextUrl":28,"authors":1384,"publicationType":1033,"publisherRelationship":1465,"citationCount":28,"citationInfo":28,"publishDate":1490,"publishYear":1491,"citationAnalyzeStatus":878,"lastCitationAnalyze":28,"indexDatabases":1492,"openAccess":28,"references":28,"isForceReanalyzing":1062},"002311b3-02b5-4ce4-817b-8ae8bd21dbb4","2024-01-16T20:04:23.336+00:00","2024-09-02T15:53:40.864+00:00",[],"Gene-structure-transcripts-and-calciotropic-effects-of-the-PTH-family-of-peptides-in-Xenopus-and-chicken",{"abstract":1375,"title":1377,"references":1379,"doi":1381},{"EN":1376},"Parathyroid hormone (PTH) and PTH-related peptide (PTHrP) belong to a family of endocrine factors that share a highly conserved N-terminal region (amino acids 1-34) and play key roles in calcium homeostasis, bone formation and skeletal development. Recently, PTH-like peptide (PTH-L) was identified in teleost fish raising questions about the evolution of these proteins. Although PTH and PTHrP have been intensively studied in mammals their function in other vertebrates is poorly documented. Amphibians and birds occupy unique phylogenetic positions, the former at the transition of aquatic to terrestrial life and the latter at the transition to homeothermy. Moreover, both organisms have characteristics indicative of a complex system in calcium regulation. This study investigated PTH family evolution in vertebrates with special emphasis on Xenopus and chicken. The PTH-L gene is present throughout the vertebrates with the exception of placental mammals. Gene structure of PTH and PTH-L seems to be conserved in vertebrates while PTHrP gene structure is divergent and has acquired new exons and alternative promoters. Splice variants of PTHrP and PTH-L are common in Xenopus and chicken and transcripts of the former have a widespread tissue distribution, although PTH-L is more restricted. PTH is widely expressed in fish tissue but from Xenopus to mammals becomes largely restricted to the parathyroid gland. The N-terminal (1-34) region of PTH, PTHrP and PTH-L in Xenopus and chicken share high sequence conservation and the capacity to modify calcium fluxes across epithelia suggesting a conserved role in calcium metabolism possibly via similar receptors. The parathyroid hormone family contains 3 principal members, PTH, PTHrP and the recently identified PTH-L. In teleosts there are 5 genes which encode PTHrP (2), PTH (2) and PTH-L and in tetrapods there are 3 genes (PTHrP, PTH and PTH-L), the exception is placental mammals which have 2 genes and lack PTH-L. It is hypothesized that genes of the PTH family appeared at approximately the same time during the vertebrate radiation and evolved via gene duplication\u002Fdeletion events. PTH-L was lost from the genome of eutherian mammals and PTH, which has a paracrine distribution in lower vertebrates, became the product of a specific endocrine tissue in Amphibia, the parathyroid gland. The PTHrP gene organisation diverged and became more complex in vertebrates and retained its widespread tissue distribution which is congruent with its paracrine nature.",{"EN":1378},"Gene structure, transcripts and calciotropic effects of the PTH family of peptides in Xenopus and chicken",{"VOID":1380},"Potts JT: Parathyroid hormone: past and present. J Endocrinol. 2005, 187 (3): 311-325. 10.1677\u002Fjoe.1.06057.\nCanario AVM, Fuentes J, Guerreiro PM, Power DM: Parathyroid hormone and related peptides in fish: From sequence to function. Novel aspects of PTHrP physiopathology. Edited by: Luparello C. 2007, Nova Science Publishers, 27-40.\nGuerreiro PM, Renfro JL, Power DM, Canario AVM: The parathyroid hormone family of peptides: structure, tissue distribution, regulation, and potential functional roles in calcium and phosphate balance in fish. Am J Physiol Regul Integr Comp Physiol. 2007, 292 (2): R679-696.\nGensure RC, Gardella TJ, Juppner H: Parathyroid hormone and parathyroid hormone-related peptide, and their receptors. Biochem Biophys Res Commun. 2005, 328 (3): 666-678. 10.1016\u002Fj.bbrc.2004.11.069.\nCanario AVM, Rotllant J, Fuentes J, Guerreiro PM, Rita Teodosio H, Power DM, Clark MS: Novel bioactive parathyroid hormone and related peptides in teleost fish. FEBS Lett. 2006, 580: 291-299. 10.1016\u002Fj.febslet.2005.12.023.\nGensure RC, Ponugoti B, Gunes Y, Papasani MR, Lanske B, Bastepe M, Rubin DA, Juppner H: Identification and characterization of two parathyroid hormone-like molecules in zebrafish. Endocrinology. 2004, 145 (4): 1634-1639. 10.1210\u002Fen.2003-0964.\nDanks JA, Ho PM, Notini AJ, Katsis F, Hoffmann P, Kemp BE, Martin TJ, Zajac JD: Identification of a parathyroid hormone in the fish Fugu rubripes. J Bone Miner Res. 2003, 18 (7): 1326-1331. 10.1359\u002Fjbmr.2003.18.7.1326.\nJaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, et al: Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature. 2004, 431 (7011): 946-957. 10.1038\u002Fnature03025.\nHabener JF, Kemper BW, Rich A, Potts JT: Biosynthesis of parathyroid hormone. Recent Prog Horm Res. 1976, 33: 249-308.\nMinina E, Kreschel C, Naski MC, Ornitz DM, Vortkamp A: Interaction of FGF, Ihh\u002FPthlh, and BMP signaling Integrates chondrocyte proliferation and hypertrophic differentiation. Dev Cell. 2002, 3 (3): 439-449. 10.1016\u002FS1534-5807(02)00261-7.\nMoseley JM, Gillespie MT: Parathyroid hormone-related protein. Crit Rev Clin Lab Sci. 1995, 32 (3): 299-343. 10.3109\u002F10408369509084687.\nPhilbrick W, Wysolmersky J, Galbraith S, Holt E, Orloff J, Yang K, Vasavada R, Weir E, Broadus A, Stewart A: Defining the roles of parathyroid hormone-related protein in normal physiology. Physiol Rev. 1996, 76 (1): 127-173.\nSafer JD, Ray S, Holick MF: A topical parathyroid hormone\u002Fparathyroid hormone-related peptide receptor antagonist stimulates hair growth in mice. Endocrinology. 2007, 148 (3): 1167-1170. 10.1210\u002Fen.2006-1442.\nIngleton P, Danks J: Distribution and functions of parathyroid hormone-related protein in vertebrate cells. Int Rev Cytol. 1996, 166: 231-280. 10.1016\u002FS0074-7696(08)62510-3.\nJuppner H, Abou-Samra AB, Freeman M, Kong XF, Schipani E, Richards J, Kolakowski LF, Hock J, Potts JT, Kronenberg HM, et al: A G protein-linked receptor for parathyroid hormone and parathyroid hormone-related peptide. Science. 1991, 254 (5034): 1024-1026. 10.1126\u002Fscience.1658941.\nOrloff JJ, Reddy D, de Papp AE, Yang KH, Soifer NE, Stewart AF: Parathyroid hormone-related protein as a prohormone: posttranslational processing and receptor interactions. Endocr Rev. 1994, 15 (1): 40-60.\nPapasani MR, Gensure RC, Yan YL, Gunes Y, Postlethwait JH, Ponugoti B, John MR, Juppner H, Rubin DA: Identification and characterization of the zebrafish and fugu genes encoding tuberoinfundibular peptide 39. Endocrinology. 2004, 145 (11): 5294-5304. 10.1210\u002Fen.2004-0159.\nUsdin TB, Hoare SR, Wang T, Mezey E, Kowalak JA: TIP39: a new neuropeptide and PTH2-receptor agonist from hypothalamus. Nat Neurosci. 1999, 2 (11): 941-943. 10.1038\u002F14724.\nRubin DA, Juppner H: Zebrafish express the common parathyroid hormone\u002Fparathyroid hormone-related peptide receptor (PTH1R) and a novel receptor (PTH3R) that is preferentially activated by mammalian and fugufish parathyroid hormone-related peptide. J Biol Chem. 1999, 274 (40): 28185-28190. 10.1074\u002Fjbc.274.40.28185.\nRubin DA, Hellman P, Zon LI, Lobb CJ, Bergwitz C, Juppner H: A G protein-coupled receptor from zebrafish is activated by human parathyroid hormone and not by human or teleost parathyroid hormone-related peptide. Implications for the evolutionary conservation of calcium-regulating peptide hormones. J Biol Chem. 1999, 274 (33): 23035-23042. 10.1074\u002Fjbc.274.33.23035.\nRotllant J, Guerreiro PM, Anjos L, Redruello B, Canario AV, Power DM: Stimulation of cortisol release by the N terminus of teleost parathyroid hormone-related protein in interrenal cells in vitro. Endocrinology. 2005, 146 (1): 71-76. 10.1210\u002Fen.2004-0644.\nRotllant J, Guerreiro PM, Redruello B, Fernandes H, Apolónia L, Anjos L, Canario AVM, Power DM: Ligand binding and signalling pathways of PTH receptors in sea bream (Sparus auratus) enterocytes. Cell Tissue Res. 2006, 323 (2): 333-341. 10.1007\u002Fs00441-005-0070-7.\nRotllant J, Redruello B, Guerreiro PM, Fernandes H, Canario AV, Power DM: Calcium mobilization from fish scales is mediated by parathyroid hormone related protein via the parathyroid hormone type 1 receptor. Regul Pept. 2005, 132 (1-3): 33-40. 10.1016\u002Fj.regpep.2005.08.004.\nDanks JA, McHale JC, Martin TJ, Ingleton PM: Parathyroid hormone-related protein in tissues of the emerging frog (Rana temporaria): immunohistochemistry and in situ hybridisation. J Anat. 1997, 190 (Pt 2): 229-238. 10.1046\u002Fj.1469-7580.1997.19020229.x.\nBergwitz C, Klein P, Kohno H, Forman SA, Lee K, Rubin D, Juppner H: Identification, functional characterization, and developmental expression of two nonallelic parathyroid hormone (PTH)\u002FPTH-related peptide receptor isoforms in Xenopus laevis (Daudin). Endocrinology. 1998, 139 (2): 723-732. 10.1210\u002Fen.139.2.723.\nRosenberg J, Pines M, Levy JJ, Nutt RF, Caulfield MP, Russell J, Sherwood LM, Hurwitz S: Renal and adrenal adenosine 3',5'-monophosphate production and corticosteroid secretion in response to synthetic chicken parathyroid hormone-(1-34). Endocrinology. 1989, 125 (2): 1082-1089. 10.1210\u002Fendo-125-2-1082.\nPackard MJ, Clark NB, Erickson JP: The effect of calcium-regulating hormones on transport of calcium across the chorioallantoic membrane of the chicken embryo. Comp Biochem Physiol A Mol Integr Physiol. 1998, 119 (2): 547-552. 10.1016\u002FS1095-6433(97)00465-0.\nZuscik MJ, O'Keefe RJ, Gunter TE, Puzas JE, Schwarz EM, Rosier RN: Parathyroid hormone-related peptide regulation of chick tibial growth plate chondrocyte maturation requires protein kinase A. J Orthop Res. 2002, 20 (5): 1079-1090. 10.1016\u002FS0736-0266(02)00027-X.\nZhao Q, Brauer PR, Xiao L, McGuire MH, Yee JA: Expression of parathyroid hormone-related peptide (PTHrP) and its receptor (PTH1R) during the histogenesis of cartilage and bone in the chicken mandibular process. J Anat. 2002, 201 (2): 137-151. 10.1046\u002Fj.1469-7580.2002.00078.x.\nMedill NJ, Praul CA, Ford BC, Leach RM: Parathyroid hormone-related peptide expression in the epiphyseal growth plate of the juvenile chicken: evidence for the origin of the parathyroid hormone-related peptide found in the epiphyseal growth plate. J Cell Biochem. 2001, 80 (4): 504-511. [http:\u002F\u002Fgoo.gl\u002FVwTRT]\nIeda T, Takahashi T, Saito N, Yasuoka T, Kawashima M, Shimada K: Changes in parathyroid hormone-related peptide receptor binding in the shell gland of laying hens (Gallus domesticus) during the oviposition cycle. Gen Comp Endocrinol. 2000, 117 (2): 182-188. 10.1006\u002Fgcen.1999.7395.\nKhosla S, Demay M, Pines M, Hurwitz S, Potts JT, Kronenberg HM: Nucleotide sequence of cloned cDNAs encoding chicken preproparathyroid hormone. J Bone Miner Res. 1988, 3 (6): 689-698. 10.1002\u002Fjbmr.5650030615.\nRussell J, Sherwood LM: Nucleotide sequence of the DNA complementary to avian (chicken) preproparathyroid hormone mRNA and the deduced sequence of the hormone precursor. Mol Endocrinol. 1989, 3 (2): 325-331. 10.1210\u002Fmend-3-2-325.\nOkabe M, Graham A: The origin of the parathyroid gland. Proc Natl Acad Sci USA. 2004, 101 (51): 17716-17719. 10.1073\u002Fpnas.0406116101.\nThiede MA, Rutledge SJ: Nucleotide sequence of a parathyroid hormone-related peptide expressed by the 10 day chicken embryo. Nucleic Acids Res. 1990, 18 (10): 3062-10.1093\u002Fnar\u002F18.10.3062.\nSrivastav AK, Das VK, Das S, Sasayama Y, Suzuki N: Amphibian parathyroids: morphological and functional aspects. Microsc Res Tech. 1995, 32 (2): 79-90. 10.1002\u002Fjemt.1070320203.\nKoefoed-Johnsen V, Ussing HH: The nature of the frog skin potential. Acta Physiol Scand. 1958, 42 (3-4): 298-308. 10.1111\u002Fj.1748-1716.1958.tb01563.x.\nJohn MR, Arai M, Rubin DA, Jonsson KB, Juppner H: Identification and characterization of the murine and human gene encoding the tuberoinfundibular peptide of 39 residues. Endocrinology. 2002, 143 (3): 1047-1057. 10.1210\u002Fen.143.3.1047.\nJin DY, Zhang ZQ, Zhou YA, Hou YD: Evaluation of the purity of recombinant proteins and detection of residual protein contaminants via N-terminal microsequencing and database searching. Chin J Biotechnol. 1991, 7 (2): 105-111.\nMurray TM, Rao LG, Divieti P, Bringhurst FR: Parathyroid hormone secretion and action: evidence for discrete receptors for the carboxyl-terminal region and related biological actions of carboxyl-terminal ligands. Endocr Rev. 2005, 26 (1): 78-113. 10.1210\u002Fer.2003-0024.\nShimizu M, Potts JT, Gardella TJ: Minimization of Parathyroid Hormone: Novel amino-terminal parathyroid hormone fragments with enhanced potency in activating the type-1 parathyroid hormone receptor. J Biol Chem. 2000, 275 (29): 21836-21843. 10.1074\u002Fjbc.M909861199.\nPower DM, Ingleton PM, Flanagan J, Canario AVM, Danks J, Elgar G, Clark MS: Genomic structure and expression of parathyroid hormone-related protein gene (PTHrP) in a teleost, Fugu rubripes. Gene. 2000, 250 (1-2): 67-76. 10.1016\u002FS0378-1119(00)00167-0.\nMignone F, Gissi C, Liuni S, Pesole G: Untranslated regions of mRNAs. Genome Biol. 2002, 3 (3): reviews0004-10.1186\u002Fgb-2002-3-3-reviews0004.\nKreth S, Ledderose C, Kaufmann I, Groeger G, Thiel M: Differential expression of 5'-UTR splice variants of the adenosine A2A receptor gene in human granulocytes: identification, characterization, and functional impact on activation. FASEB J. 2008, 22 (9): 3276-3286. 10.1096\u002Ffj.07-101097.\nAbbink W, Flik G: Parathyroid hormone-related protein in teleost fish. Gen Comp Endocrinol. 2006, 152 (2-3): 243-251. 10.1016\u002Fj.ygcen.2006.11.010.\nCortelyou JR, McWhinnie DJ: Parathyroid glands of amphibians. I. Parathyroid structure and function in the amphibian, with emphasis on regulation of mineral ions in body fluids. Am Zool. 1967, 7 (4): 843-855.\nBalabanova S, King O, Teller WM, Reinhardt G: Distribution and concentration of immunoreactive parathyroid hormone in brain and pituitary of sheep. Klin Wochenschr. 1985, 63 (9): 419-422. 10.1007\u002FBF01733667.\nPang PK, Kaneko T, Harvey S: Immunocytochemical distribution of PTH immunoreactivity in vertebrate brains. Am J Physiol. 1988, 255 (4 Pt 2): R643-647.\nPang PK, Harvey S, Fraser R, Kaneko T: Parathyroid hormone-like immunoreactivity in brains of tetrapod vertebrates. Am J Physiol. 1988, 255 (4 Pt 2): R635-642.\nGünther T, Chen ZF, Kim J, Priemel M, Rueger JM, Amling M, Moseley JM, Martin TJ, Anderson DJ, Karsenty G: Genetic ablation of parathyroid glands reveals another source of parathyroid hormone. Nature. 2000, 406 (6792): 199-203. 10.1038\u002F35018111.\nFarquharson C, Jefferies D, Seawright E, Houston B: Regulation of chondrocyte terminal differentiation in the postembryonic growth plate: the role of the PTHrP-Indian hedgehog axis. Endocrinology. 2001, 142 (9): 4131-4140. 10.1210\u002Fen.142.9.4131.\nStiffler DF, Yee JC, Tefft JD: Responses of frog skin, Rana pipiens, calcium ion transport to parathyroid hormone, calcitonin, and vitamin D3. Gen Comp Endocrinol. 1998, 112 (2): 191-199. 10.1006\u002Fgcen.1998.7161.\nSchermer DT, Bradley MS, Bambino TH, Nissenson RA, Strewler GJ: Functional properties of a synthetic chicken parathyroid hormone-related protein 1-36 fragment. J Bone Miner Res. 1994, 9 (7): 1041-1046. 10.1002\u002Fjbmr.5650090711.\nRodriguez-Commes J, Forrest JN, Lopez R, Gasalla-Herraiz J, Isales CM: Parathyroid hormone stimulates electrogenic sodium-transport in A6 Cells. Biochem Biophys Res Commun. 1995, 213 (2): 688-698. 10.1006\u002Fbbrc.1995.2186.\nLaverty G, McWilliams C, Sheldon A, Arnason SS: PTH stimulates a Cl--dependent and EIPA-sensitive current in chick proximal tubule cells in culture. Am J Physiol Renal Physiol. 2003, 284 (5): F987-F995. [http:\u002F\u002Fgoo.gl\u002Fi6yow]\nFuentes J, Figueiredo J, Power DM, Canario AVM: Parathyroid hormone-related protein regulates intestinal calcium transport in the sea bream (Sparus auratus). Am J Physiol Regul Integr Comp Physiol. 2006, 291 (5): R1499-1506.\nAltschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol. 1990, 215 (3): 403-410. [http:\u002F\u002Fgoo.gl\u002FNgntr]\nMartyniuk CJ, Kroll KJ, Porak WF, Steward C, Grier HJ, Denslow ND: Seasonal relationship between gonadotropin, growth hormone, and estrogen receptor mRNA expression in the pituitary gland of largemouth bass. Gen Comp Endocrinol. 2009, 163 (3): 306-317. 10.1016\u002Fj.ygcen.2009.04.028.\nThompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG: The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25 (24): 4876-4882. 10.1093\u002Fnar\u002F25.24.4876.\nSaitou N, Nei M: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987, 4 (4): 406-425.\nKumar S, Tamura K, Nei M: MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform. 2004, 5 (2): 150-163. 10.1093\u002Fbib\u002F5.2.150.\nHamburger V, Hamilton HL: A Series of Normal Stages in the Development of the Chick-Embryo, (Reprinted from J Morph, Vol 88, 1951). Dev Dyn. 1992, 195 (4): 231-272.\nGraves JS, Dunn BE, Brown SC: Embryonic chick allantois: functional isolation and development of sodium transport. Am J Physiol. 1986, 251 (5 Pt 1): C787-794.",{"VOID":1382},"10.1186\u002F1471-2148-10-373","https:\u002F\u002Fbmcecolevol.biomedcentral.com\u002Farticles\u002F10.1186\u002F1471-2148-10-373",[1385,1400,1413,1426,1439,1452],{"id":1386,"sortIndex":32,"researcher":28,"roles":1387,"affiliations":1388,"properties":1397,"displayName":1399,"givenName":28,"familyName":28},"1a39178c-b38f-4f34-bde9-919287c5630e",[962],[1389],{"id":1390,"sortIndex":32,"affiliation":1391,"properties":28},"c0ca6a0f-729b-4010-81bd-94a504c66366",{"id":1390,"createTime":28,"updateTime":28,"relativeEntities":1392,"slug":28,"properties":1393,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1396,"statistic":28},[],{"title":1394},{"VI":1395},"Centre of Marine Sciences, Comparative Molecular Endocrinology, Universidade do Algarve, Faro, Portugal",[],{"title":1398},{"VI":1399},"Pedro LC Pinheiro",{"id":1401,"sortIndex":40,"researcher":28,"roles":1402,"affiliations":1403,"properties":1410,"displayName":1412,"givenName":28,"familyName":28},"6d69cc50-3463-47a1-b988-3b92405505e4",[962],[1404],{"id":1390,"sortIndex":32,"affiliation":1405,"properties":28},{"id":1390,"createTime":28,"updateTime":28,"relativeEntities":1406,"slug":28,"properties":1407,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1409,"statistic":28},[],{"title":1408},{"VI":1395},[],{"title":1411},{"VI":1412},"João CR Cardoso",{"id":1414,"sortIndex":123,"researcher":28,"roles":1415,"affiliations":1416,"properties":1423,"displayName":1425,"givenName":28,"familyName":28},"b5f83347-3dc8-4b55-9e79-33d9fd164415",[962],[1417],{"id":1390,"sortIndex":32,"affiliation":1418,"properties":28},{"id":1390,"createTime":28,"updateTime":28,"relativeEntities":1419,"slug":28,"properties":1420,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1422,"statistic":28},[],{"title":1421},{"VI":1395},[],{"title":1424},{"VI":1425},"Ana S Gomes",{"id":1427,"sortIndex":42,"researcher":28,"roles":1428,"affiliations":1429,"properties":1436,"displayName":1438,"givenName":28,"familyName":28},"beba8728-8701-4137-ad50-519177df5f41",[962],[1430],{"id":1390,"sortIndex":32,"affiliation":1431,"properties":28},{"id":1390,"createTime":28,"updateTime":28,"relativeEntities":1432,"slug":28,"properties":1433,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1435,"statistic":28},[],{"title":1434},{"VI":1395},[],{"title":1437},{"VI":1438},"Juan Fuentes",{"id":1440,"sortIndex":45,"researcher":28,"roles":1441,"affiliations":1442,"properties":1449,"displayName":1451,"givenName":28,"familyName":28},"824eb51d-f30a-4cda-9665-3af7236c7eb9",[962],[1443],{"id":1390,"sortIndex":32,"affiliation":1444,"properties":28},{"id":1390,"createTime":28,"updateTime":28,"relativeEntities":1445,"slug":28,"properties":1446,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1448,"statistic":28},[],{"title":1447},{"VI":1395},[],{"title":1450},{"VI":1451},"Deborah M Power",{"id":1453,"sortIndex":46,"researcher":28,"roles":1454,"affiliations":1455,"properties":1462,"displayName":1464,"givenName":28,"familyName":28},"4462582c-2f50-495a-b25e-2e14b8e10e64",[962],[1456],{"id":1390,"sortIndex":32,"affiliation":1457,"properties":28},{"id":1390,"createTime":28,"updateTime":28,"relativeEntities":1458,"slug":28,"properties":1459,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1461,"statistic":28},[],{"title":1460},{"VI":1395},[],{"title":1463},{"VI":1464},"Adelino VM Canário",{"url":1383,"publisher":1466,"properties":1485},{"id":868,"createTime":869,"updateTime":870,"relativeEntities":1467,"slug":872,"properties":1468,"entityType":25,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":32,"subjectFields":1471,"manageAffiliations":1472,"indexDatabases":1473,"url":28,"thumbnailPath":28,"statistic":1480,"gsStatistic":28,"type":28,"analyzePriority":28},[],{"title":1469,"eissn":1470},{"EN":875},{"VOID":877},[],[],[1474],{"id":883,"indexDatabase":1475,"url":889,"indexYears":890,"academicFieldIds":28,"indexDatabaseRanking":891},{"id":775,"createTime":28,"updateTime":28,"relativeEntities":1476,"label":1477,"description":1478,"key":781,"publicationTags":1479,"standard":28},[],{"EN":778,"VI":778},{"EN":778,"VI":780},[783],{"impactFactor":32,"impactFactorByYear":1481,"i10Index":903,"i10IndexLast5Year":140,"totalPublication":595,"totalPublicationByYear":1482,"totalCitation":905,"totalCitationByYear":1483,"totalCitationPerPublication":923,"totalCitationPerPublicationByYear":1484,"hindexLast5Year":688,"hindex":688},{"2012":894,"2013":895,"2014":896,"2015":593,"2016":897,"2017":898,"2018":899,"2019":900,"2020":901,"2021":902,"2022":42},{"2005":49,"2006":45,"2007":47,"2008":147,"2009":323,"2010":128,"2011":196,"2012":122,"2013":146,"2014":131,"2015":152,"2016":148,"2017":137,"2018":136,"2019":352,"2020":122},{"2005":907,"2006":908,"2007":909,"2008":910,"2009":911,"2010":912,"2011":913,"2012":914,"2013":915,"2014":916,"2015":917,"2016":918,"2017":919,"2018":920,"2019":921,"2020":922},{"2005":925,"2006":361,"2007":926,"2008":927,"2009":928,"2010":929,"2011":930,"2012":931,"2013":932,"2014":140,"2015":933,"2016":934,"2017":935,"2018":936,"2019":937,"2020":938},{"pages":1486,"volume":1488},{"VOID":1487},"1-14",{"VOID":1489},"10","2010-12-01",2010,[891],{"id":1494,"createTime":1495,"updateTime":1495,"relativeEntities":1496,"slug":1497,"properties":1498,"entityType":956,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":1507,"translateLanguages":28,"viewCount":32,"primaryUrl":1508,"fullTextUrl":28,"authors":1509,"publicationType":1033,"publisherRelationship":1561,"citationCount":28,"citationInfo":28,"publishDate":1581,"publishYear":1582,"citationAnalyzeStatus":878,"lastCitationAnalyze":28,"indexDatabases":1583,"openAccess":28,"references":1584,"isForceReanalyzing":1062},"00290176-453a-48d2-b5d2-64504bfc3b8f","2024-04-11T13:35:20.733+00:00",[],"Shape-differences-rather-than-size-differences-between-castes-in-the-Neotropical-swarm-founding-wasp-Metapolybia-docilis-Hymenoptera-Vespidae-Epiponini-",{"abstract":1499,"title":1501,"keywords":1503,"doi":1505},{"EN":1500},"Swarm-founding epiponine wasps are an intriguing group of social insects in which colonies are polygynic (several queens share reproduction) and differentiation between castes is often not obvious. However, caste differences in some may be more pronounced in later phases of the colony cycle. Using morphometric analyses and multivariate statistics, it was found that caste differences in Metapolybia docilis are slight but more distinct in latter stages of the colony cycle. Because differences in body parts are so slight, it is proposed that such variation may be due to differential growth rates of body parts rather than to queens being larger in size, similar to other previously observed epiponines.",{"EN":1502},"Shape differences rather than size differences between castes in the Neotropical swarm-founding wasp Metapolybia docilis (Hymenoptera: Vespidae, Epiponini)",{"EN":1504},"",{"VOID":1506},"10.1186\u002F1471-2148-3-10",[31],"https:\u002F\u002Fbmcecolevol.biomedcentral.com\u002Farticles\u002F10.1186\u002F1471-2148-3-10",[1510,1525,1548],{"id":1511,"sortIndex":32,"researcher":28,"roles":1512,"affiliations":1513,"properties":1522,"displayName":1524,"givenName":28,"familyName":28},"2ffa1970-1cc6-4627-874e-fdcf184306b2",[],[1514],{"id":1515,"sortIndex":32,"affiliation":1516,"properties":28},"1f451e3b-098b-47bc-a7c6-7924c6946c92",{"id":1515,"createTime":28,"updateTime":28,"relativeEntities":1517,"slug":28,"properties":1518,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1521,"statistic":28},[],{"title":1519},{"EN":1520},"Departamento de Biologia, Faculdade de Filosofia Ciências e Letras de Ribeirão Preto, Universidade de São Paulo, Riberão Preto, Brazil",[],{"title":1523},{"EN":1524},"Mário V Baio",{"id":1526,"sortIndex":40,"researcher":28,"roles":1527,"affiliations":1528,"properties":1543,"displayName":1547,"givenName":28,"familyName":28},"02298860-4ec3-44e1-903c-f284bf834efa",[],[1529,1535],{"id":1515,"sortIndex":32,"affiliation":1530,"properties":28},{"id":1515,"createTime":28,"updateTime":28,"relativeEntities":1531,"slug":28,"properties":1532,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1534,"statistic":28},[],{"title":1533},{"EN":1520},[],{"id":1536,"sortIndex":32,"affiliation":1537,"properties":28},"a09d2e3c-b366-4bc0-926e-b8d5e020a6b6",{"id":1536,"createTime":28,"updateTime":28,"relativeEntities":1538,"slug":28,"properties":1539,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1542,"statistic":28},[],{"title":1540},{"EN":1541},"Museum of Biological Diversity, Department of Entomology, The Ohio State University, Columbus, USA",[],{"email":1544,"title":1546},{"VOID":1545},"fernandobn@ffclrp.usp.br",{"EN":1547},"Fernando B Noll",{"id":1549,"sortIndex":123,"researcher":28,"roles":1550,"affiliations":1551,"properties":1558,"displayName":1560,"givenName":28,"familyName":28},"52fa96a3-aa46-4d82-b3db-df157a713169",[],[1552],{"id":1515,"sortIndex":32,"affiliation":1553,"properties":28},{"id":1515,"createTime":28,"updateTime":28,"relativeEntities":1554,"slug":28,"properties":1555,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1557,"statistic":28},[],{"title":1556},{"EN":1520},[],{"title":1559},{"EN":1560},"Ronaldo Zucchi",{"url":28,"publisher":1562,"properties":28},{"id":868,"createTime":869,"updateTime":870,"relativeEntities":1563,"slug":872,"properties":1564,"entityType":25,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":32,"subjectFields":1567,"manageAffiliations":1568,"indexDatabases":1569,"url":28,"thumbnailPath":28,"statistic":1576,"gsStatistic":28,"type":28,"analyzePriority":28},[],{"title":1565,"eissn":1566},{"EN":875},{"VOID":877},[],[],[1570],{"id":883,"indexDatabase":1571,"url":889,"indexYears":890,"academicFieldIds":28,"indexDatabaseRanking":891},{"id":775,"createTime":28,"updateTime":28,"relativeEntities":1572,"label":1573,"description":1574,"key":781,"publicationTags":1575,"standard":28},[],{"EN":778,"VI":778},{"EN":778,"VI":780},[783],{"impactFactor":32,"impactFactorByYear":1577,"i10Index":903,"i10IndexLast5Year":140,"totalPublication":595,"totalPublicationByYear":1578,"totalCitation":905,"totalCitationByYear":1579,"totalCitationPerPublication":923,"totalCitationPerPublicationByYear":1580,"hindexLast5Year":688,"hindex":688},{"2012":894,"2013":895,"2014":896,"2015":593,"2016":897,"2017":898,"2018":899,"2019":900,"2020":901,"2021":902,"2022":42},{"2005":49,"2006":45,"2007":47,"2008":147,"2009":323,"2010":128,"2011":196,"2012":122,"2013":146,"2014":131,"2015":152,"2016":148,"2017":137,"2018":136,"2019":352,"2020":122},{"2005":907,"2006":908,"2007":909,"2008":910,"2009":911,"2010":912,"2011":913,"2012":914,"2013":915,"2014":916,"2015":917,"2016":918,"2017":919,"2018":920,"2019":921,"2020":922},{"2005":925,"2006":361,"2007":926,"2008":927,"2009":928,"2010":929,"2011":930,"2012":931,"2013":932,"2014":140,"2015":933,"2016":934,"2017":935,"2018":936,"2019":937,"2020":938},"2003-05-13",2003,[891],[1585,1587,1589,1591,1593,1595,1597,1599,1601,1603,1605,1607,1609,1611,1613,1615,1617,1619,1621,1623,1625,1627,1629,1631,1633,1635,1637,1639,1641,1643,1645,1647,1649,1651,1653],{"id":28,"text":1586,"url":28,"identifiers":28},"Richards OW: The social wasps of the Americas excluding the Vespinae. London. British Museum (Natural History). 1978",{"id":28,"text":1588,"url":28,"identifiers":28},"Carpenter JM: Phylogenetic relationships and the origin of social behavior in the Vespidae. In: The social biology of wasps. Edited by: Ross KG, Matthews RW. 1991, Cornell University Press, Ithaca, New York, 7-32.",{"id":28,"text":1590,"url":28,"identifiers":28},"Jeanne RL: The swarm-founding Vespidae. In: The social biology of wasps. Edited by: Ross KG, Matthews RW. 1991, Cornell University Press, Ithaca, New York, 191-231.",{"id":28,"text":1592,"url":28,"identifiers":28},"Richards OW, Richards MJ: Observations on the social wasps of South America (Hymenoptera, Vespidae). Trans Roy Entomol Soc London. 1951, 102: 1-170.",{"id":28,"text":1594,"url":28,"identifiers":28},"Richards OW: The biology of the social wasps (Hymenoptera, Vespidae). Biol Rev. 1971, 46: 483-528.",{"id":28,"text":1596,"url":28,"identifiers":28},"West-Eberhard MJ: Temporary queens in Metapolybia wasps: non-reproductive helpers without altruism?. Science. 1978, 200: 441-443.",{"id":28,"text":1598,"url":28,"identifiers":28},"Queller DC, Hughes CR, Strassmann JE: Genetic relatedness in colonies of tropical wasps with multiple queens. Science. 1988, 242: 1155-1157.",{"id":28,"text":1600,"url":28,"identifiers":28},"Queller DC, Negrón-Stomayor JA, Hughes CR, Strassmann JE: Queen number and genetic relatedness in a neotropical wasp, Polybia occidentalis. Behav Ecol. 1993, 4: 7-13.",{"id":28,"text":1602,"url":28,"identifiers":28},"Hughes CR, Queller DC, Negrón-Sotomayor JA, Strassmann JE, Solis C, Gastreich KR: The maintenance of high genetic relatedness in multi-queen colonies of social wasps. In: Queen number and sociality in insects. Edited by: Keller L. 1993, Oxford University press, New York",{"id":28,"text":1604,"url":28,"identifiers":28},"Strassmann JE, Goodnight KF, Kihger CJ, Queller DC: The genetic structure of swarms and the timing of their production in the queen cycles of neotropical wasps. Molecular Ecology. 1998, 7: 709-718. 10.1046\u002Fj.1365-294x.1998.00381.x.",{"id":28,"text":1606,"url":28,"identifiers":28},"Noll FB, Zucchi R: Caste and influence of the colony cycle in swarm-founding polistine wasps (Hymenoptera, Vespidae, Epiponini). Insectes Sociaux. 2002, 49: 62-74. 10.1007\u002Fs00040-002-8281-3.",{"id":28,"text":1608,"url":28,"identifiers":28},"Mateus S, Noll FB, Zucchi R: Morphological caste differences in neotropical swarm-founding polistinae wasps: Parachartergus smithii (Hymenoptera: Vespidae). J New York Entomol Soc. 1997, 105: 129-139.",{"id":28,"text":1610,"url":28,"identifiers":28},"Shima SN, Noll FB, Zucchi R, Yamane S: Morphological caste differences in the Neotropical swarm-founding polistine Wasps IV. Pseudopolybia vespiceps, with preliminary considerations on the role of intermediate females in social organization of the Epiponini (Hymenoptera, Vespidae). J Hym Res. 1998, 7: 280-295.",{"id":28,"text":1612,"url":28,"identifiers":28},"Mateus S, Noll FB, Zucchi R: Caste differences and related bionomic aspects of Chartergellus communis, a neotropical swarm-founding polistine wasp (Hymenoptera: Vespidae: Polistinae: Epiponini). J New York Entomol Soc. 1999, 107: 390-405.",{"id":28,"text":1614,"url":28,"identifiers":28},"Shima SN, Noll FB, Zucchi R: Morphological caste differences in the neotropical swarm-founding polistine wasp, Brachygastra lecheguana (Hymenoptera: Vespidae, Polistinae, Epiponini). Sociobiology. 2000, 36: 41-52.",{"id":28,"text":1616,"url":28,"identifiers":28},"Noda SCM, Shima SN, Noll FB: Morphological and physiological caste differences in Synoeca cyanea (Hymenoptera, Vespidae, Epiponini) according to the ontogenetic development of the colonies. Sociobiology. 2003, 41: 547-570.",{"id":28,"text":1618,"url":28,"identifiers":28},"Noll FB, Zucchi R: Increasing caste differences related to life cycle progression in some neotropical swarm-founding polygynic wasps (Hymenoptera: Vespidae: Epiponini). Ethol Ecol Evol. 2000, 12: 43-65.",{"id":28,"text":1620,"url":28,"identifiers":28},"Hunt JH, Schmidt DK, Mulkey SS, Williams MA: Caste dimorphism in Epipona guerini (Hymenoptera: Vespidae): Further evidence for larval determination. J Kansas Entomol Soc. 1996, 69: 362-369.",{"id":28,"text":1622,"url":28,"identifiers":28},"Jeanne RL, Fagen R: Polymorphism in Stelopolybia areata (Hymenoptera, Vespidae). Psyche. 1974, 81: 155-166.",{"id":28,"text":1624,"url":28,"identifiers":28},"Sakagami SF, Zucchi R, Yamane S, Noll FB, Camargo JMF: Morphological caste differences in Agelaia vicina, the neotropical swarm-founding Polistinae wasp with the largest colony size among social wasps (Hymenoptera, Vespidae). Sociobiology. 1996, 28: 207-223.",{"id":28,"text":1626,"url":28,"identifiers":28},"Baio MV, Noll FB, Zucchi R, Simões D: Non-allometric caste differences in Agelaia vicina (Hymenoptera, Vespidae, Epiponini). Sociobiology. 1998, 32: 465-476.",{"id":28,"text":1628,"url":28,"identifiers":28},"Noll FB, Simões D, Zucchi R: Morphological caste differences in the neotropical swarm-founding Polistine wasps: Agelaia m. multipicta and A. p. pallipes (Hymenoptera Vespidae). Ethology Ecology & Evolution. 1997, 9: 361-372.",{"id":28,"text":1630,"url":28,"identifiers":28},"Shima SN, Yamane S, Zucchi R: Morphological Caste Differences in Some Neotropical Swarm-founding Polistinae Wasps I. Apoica flavissima (Hymenoptera, Vespidae). Jap J Ent. 1994, 62: 811-822.",{"id":28,"text":1632,"url":28,"identifiers":28},"Jeanne RL, Graf CA, Yandell BS: Non-Size-Based morphological castes in a social insect. Naturwissenschaften. 1995, 82: 296-298. 10.1007\u002Fs001140050187.",{"id":28,"text":1634,"url":28,"identifiers":28},"Shima SN, Yamane S, Zucchi R: Morphological Caste Differences in Some Neotropical Swarm-founding Polistinae Wasps II. Polybia dimidiata (Hymenoptera, Vespidae). Jpn J Ent. 1995, 64: 131-144.",{"id":28,"text":1636,"url":28,"identifiers":28},"Smethurst ME, Carpenter JM: A new species of Metapolybia ducke from Central America (Hymenoptera: Vespidae; Polistinae). J New York Ent Soc. 1998, 105: 180-185.",{"id":28,"text":1638,"url":28,"identifiers":28},"Itô Y, Yamauchi K, Tsuchida K: Reproductive condition of females in some swarm-founding wasps in Panama, as compared with some independent-founding species (Hymenoptera: Vespidae). Sociobiology. 1997, 29: 269-276.",{"id":28,"text":1640,"url":28,"identifiers":28},"Carpenter JM, Ross KG: Colony composition in four species of Polistinae from Suriname, with a description of the larva of Brachygastra scutellaris (Hymenoptera, Vespidae). Psyche. 1984, 91: 237-250.",{"id":28,"text":1642,"url":28,"identifiers":28},"Karsai I, Wenzel JW: Organization and regulation of nest construction behavior in Metapolybia wasps. J Ins Behav. 2000, 13: 111-140. 10.1023\u002FA:1007771727503.",{"id":28,"text":1644,"url":28,"identifiers":28},"West-Eberhard MJ: Intragroup selection and evolution of insect societies. In Natural selection and social behavior. Edited by: Alexander RD, Tinkle DW. 2000, Chiron Press, New York, 3-17.",{"id":28,"text":1646,"url":28,"identifiers":28},"Evans H, West-Eberhard MJ: The wasps. Univ Michigan, Ann Arbor. 1970",{"id":28,"text":1648,"url":28,"identifiers":28},"Jeanne RL: Non-allometric queen-worker dimorphism in Pseudopolybia difficilis (Hymenoptera: Vespidae). J Kansas Entomol Soc. 1996, 69: 370-374.",{"id":28,"text":1650,"url":28,"identifiers":28},"Wheeler DE: The development basis of worker castes polymorphism in ants. Am Nat. 1991, 138: 1218-1238. 10.1086\u002F285279.",{"id":28,"text":1652,"url":28,"identifiers":28},"Rao CR: Linear statistical inference. John Willey and Sons, New York. 1973",{"id":28,"text":1654,"url":28,"identifiers":28},"Forsyth A: Studies on the behavioral ecology of polygynous social wasps. Doctoral Dissertation, Harvard University, Cambridge. 1978",{"id":1656,"createTime":1657,"updateTime":1658,"relativeEntities":1659,"slug":1660,"properties":1661,"entityType":956,"verifyStatus":26,"verifyTime":1658,"verifyNote":1078,"languages":28,"translateLanguages":28,"viewCount":32,"primaryUrl":1670,"fullTextUrl":28,"authors":1671,"publicationType":1033,"publisherRelationship":1713,"citationCount":28,"citationInfo":28,"publishDate":1737,"publishYear":1738,"citationAnalyzeStatus":878,"lastCitationAnalyze":28,"indexDatabases":1739,"openAccess":28,"references":28,"isForceReanalyzing":1062},"003d1a52-7938-4b8f-9ba2-312198789cdb","2024-02-13T02:37:13.257+00:00","2025-01-15T03:09:55.665+00:00",[],"Mitochondrial-genome-evolution-in-parasitic-plants",{"abstract":1662,"title":1664,"references":1666,"doi":1668},{"EN":1663},"Parasitic plants rely on their host to cover their nutritional requirements either for their entire life or a smaller part of it. Depending on the level of parasitism, a proportional reduction on the plastid genome has been found. However, knowledge on gene loss and evolution of the mitogenome of parasitic plants is only available for four hemiparasitic Viscum species (Viscaceae), which lack many of the mitochondrial genes, while the remaining genes exhibit very fast molecular evolution rates. In this study, we include another genus, Phoradendron, from the Viscaceae, as well as 10 other hemiparasitic or holoparasitic taxa from across the phylogeny of the angiosperms to investigate how fast molecular evolution works on their mitogenomes, and the extent of gene loss. Our observations from Viscum were replicated in Phoradendron liga, whereas the remaining parasitic plants in the study have a complete set of the core mitochondrial genes and exhibit moderate or only slightly raised substitution rates compared to most autotrophic taxa, without any statistically significant difference between the different groups (autotrophs, hemiparasites and holoparasites). Additionally, further evidence is provided for the placement of Balanophoraceae within the order Santalales, while the exact placement of Cynomoriaceae still remains elusive. We examine the mitochondrial gene content of 11 hemiparasitic and holoparasitic plants and confirm previous observations in Viscaceae. We show that the remaining parasitic plants do not have significantly higher substitution rates than autotrophic plants in their mitochondrial genes. We provide further evidence for the placement of Balanophoraceae in the Santalales.",{"EN":1665},"Mitochondrial genome evolution in parasitic plants",{"VOID":1667},"Westwood JH, Yoder JI, Timko MP, dePamphilis CW. The evolution of parasitism in plants. Trends Plant Sci. 2010;15:227–35.\nSu H, Hu J, Anderson FE, Der JP, Nickrent DL. Phylogenetic relationships of Santalales with insights into the origins of holoparasitic Balanophoraceae. Taxon. 2015;64:491–506.\nFunk HT, Berg S, Krupinska K, Maier UG, Krause K. Complete DNA sequences of the plastid genomes of two parasitic flowering plant species, Cuscuta reflexa and Cuscuta gronovii. BMC Plant Biol. 2007;12:1–12.\nMcNeal JR, Kuehl JV, Boore JL, De CW. Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta. BMC Plant Biol. 2007;22:1–22.\nWicke S, Muller KF, de Pamphilis CW, Wickett NJ, Zhang Y, Renner SS, et al. Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family. Plant Cell. 2013;25:3711–25.\nMolina J, Hazzouri KM, Nickrent D, Geisler M, Meyer RS, Pentony MM, et al. Possible loss of the chloroplast genome in the parasitic flowering plant Rafflesia lagascae (Rafflesiaceae). Mol Biol Evol. 2014;31:793–803.\nLagerkvist U. “Two out of three”: an alternative method for codon reading. Proc Natl Acad Sci U S A. 1978;75:1759–62.\nPalmer JD. Contrasting modes and tempos of genome evolution in land plant organelles. Trends Genet. 1990;6:115–20.\nAlkatib S, Fleischmann TT, Scharff LB, Bock R. Evolutionary constraints on the plastid tRNA set decoding methionine and isoleucine. Nucleic Acids Res. 2012;40:6713–24.\nCusimano N, Wicke S. Massive intracellular gene transfer during plastid genome reduction in nongreen Orobanchaceae. New Phytol. 2016;210:680–93.\nBellot S, Renner SS. The Plastomes of two species in the Endoparasite genus Pilostyles (Apodanthaceae) each retain just five or six possibly functional genes. Genome Biol Evol. 2016;8:189–201.\nNaumann J, Der JP, Wafula EK, Jones SS, Wagner ST, Honaas A, et al. Detecting and characterizing the highly divergent plastid. Genome Biol Evol. 2015;8:345–63.\nPetersen G, Cuenca A, Seberg O. Plastome evolution in Hemiparasitic mistletoes. Genome Biol Evol. 2015;7:2520–32.\nLogacheva MD, Schelkunov MI, Penin AA. Sequencing and analysis of plastid genome in Mycoheterotrophic orchid Neottia nidus-avis. Genome Biol Evol. 2011;3:1296–303.\nBarrett CF, Davis JI. The plastid genome of the mycoheterotrophic Corallorhiza striata (Orchidaceae) is in the relatively early stages of degradation. Am J Bot. 2012;99:1513–23.\nLogacheva MD, Schelkunov MI, Nuraliev MS, Samigullin TH, Penin AA. The plastid genome of Mycoheterotrophic monocot Petrosavia stellaris exhibits both gene losses and multiple rearrangements. Genome Biol Evol. 2014;6:238–46.\nBraukmann T, Sasa S. Plastid genome evolution in mycoheterotrophic Ericaceae. Plant Mol Biol. 2012;79:5–20.\nBoore JL. Animal mitochondrial genomes. Nucleic Acids Res. 1999;27:1767–80.\nSloan DB, Alverson AJ, Chuckalovcak JP, Wu M, Mccauley DE, Palmer JD, et al. Rapid evolution of enormous , multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates. PLoS Biol. 2012;10:e1001241.\nAlverson AJ, Zhuo S, Rice DW, Sloan DB, Palmer JD. The mitochondrial genome of the legume Vigna radiata and the analysis of recombination across short mitochondrial repeats. PLoS One. 2011;6:e16404.\nNotsu Y, Masood S, Nishikawa T, Kubo N, Akiduki G, Nakazono M, et al. The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Mol Gen Genomics. 2002;268:434–45.\nHanda H. The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana. Nucleic Acids Res. 2003;31:5907–16.\nAdams KL, Palmer JD. Evolution of mitochondrial gene content: gene loss and transfer to the nucleus. Mol Phylogenet Evol. 2003;29:380–95.\nBellot S, Cusimano N, Luo S, Sun G, Zarre S, Gröger A, et al. Assembled plastid and mitochondrial genomes, as well as nuclear genes, place the parasite family Cynomoriaceae in the Saxifragales. Genome Biol Evol. 2016;8:2214–30.\nFan W. Comparative evolutionary analysis of Organellar genomic diversity in green plants; 2016.\nPetersen G, Cuenca A, Møller IM, Seberg O. Massive gene loss in mistletoe (Viscum, Viscaceae) mitochondria. Sci Rep. 2015;5:17588.\nSkippington E, Barkman TJ, Rice DW, Palmer JD. Miniaturized mitogenome of the parasitic plant Viscum scurruloideum is extremely divergent and dynamic and has lost all nad genes. Proc Natl Acad Sci U S A. 2015;112:E3515–24.\nWolfe KH, Li W-H, Sharp PM. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci U S A. 1987;84:9054–8.\nPalmer JD, Adams KL, Cho Y, Parkinson CL, Qiu YL, Song K. Dynamic evolution of plant mitochondrial genomes: mobile genes and introns and highly variable mutation rates. Proc Natl Acad Sci U S A. 2000;97:6960–6.\nParkinson CL, Mower JP, Qiu Y, Shirk AJ, Song K, Young ND, et al. Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae. BMC Evol Biol. 2005;5:73.\nNickrent DL, Starr EM. High rates of nucleotide substitution in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants. J Mol Evol. 1994;39:62–70.\nDuchene D, Bromham L. Rates of molecular evolution and diversification in plants: chloroplast substitution rates correlated with species-richness in the Proteaceae. BMC Evol Biol. 2013;13:65.\nHaraguchi Y, Sasaki A. Host-parasite arms race in mutation modifications: indefinite escalation despite a heavy load? J Theor Biol. 1996;183:121–37.\nBromham L, Cowman PF, Lanfear R. Parasitic plants have increased rates of molecular evolution across all three genomes. BMC Evol Biol. 2013;13:1–11.\nWales N, Andersen K, Cappellini E, Ávila-Arcos MC, Gilbert MTP. Optimization of DNA recovery and amplification from non-carbonized archaeobotanical remains. PLoS One. 2014;9:e86827.\nMeyer M, Kircher M. Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing. Cold Spring Harb Protoc 2010:pdb.prot5448 doi: https:\u002F\u002Fdoi.org\u002F10.1101\u002Fpdb.prot5448.\nLindgreen S. AdapterRemoval: easy cleaning of next-generation sequencing reads. BMC Res Notes. 2012;5:337.\nChang S, Yang T, Du T, Huang Y, Chen J, Yan J, et al. Mitochondrial genome sequencing helps show the evolutionary mechanism of mitochondrial genome formation in Brassica. BMC Genomics. 2011;12:497.\nBankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 2012;19:455–77.\nKatoh K, Misawa K, Kuma K, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002;30:3059–66.\nQiu YL, Li LB, Wang B, Xue JY, T a H, Li RQ, et al. Angiosperm phylogeny inferred from sequences of four mitochondrial genes. J Syst Evol. 2010;48:391–425.\nStamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 2006;22:2688–90.\nVenables WN, Ripley BD. Modern Applie statistics with S. 4th ed. New York: Springer; 2002.\nParadis E, Claude J, Strimmer K. APE: analyses of phylogenetics and evolution in R language. Bioinformatics. 2004;20:289–90.\nFaraway J. Extending the linear model with R. 1st ed. Boca Raton: CRC press; 2005.\nde Mendiburu F. A statistical analysis tool for agricultural research. Lima-Peru: National Engineering University (UNI); 2006.\nGrohmann L, Brennicke A, Schuster W. The mitochondrial gene encoding ribosomal protein S12 has been translocated to the nuclear genome in Oenothera. Nucleic Acids Res. 1992;20:5641–6.\nZonneveld BJM. New record holders for maximum genome size in eudicots and monocots. J Bot. 2010;2010:1–4.\nKarnkowska A, Vacek V, Zubáčová Z, Treitli SC, Petrželková R, Eme L, et al. A eukaryote without a mitochondrial organelle. Curr Biol. 2016;26:1274–84.\nLindmark DG, Muller M. Superoxide dismutase in the anaerobic flagellates, Tritrichomonas foetus and Monocercomonas sp. J Biol Chem. 1974;249:4034–7.\nJames TY, Pelin A, Bonen L, Ahrendt S, Sain D, Corradi N, et al. Shared signatures of parasitism and phylogenomics unite cryptomycota and microsporidia. Curr Biol. 2013;23:1548–53.\nMabberley DJ. Mabberley’s plant-book. 3rd ed. Cambridge: Cambridge University press; 2008.\nNickrent DL, Malécot V, Vidal-russell R, Der JP. A revised classification of Santalales. Taxon. 2010;59:538–58.\nRoquet C, Coissac E, Cruaud C, Boleda M, Boyer F, Alberti A, et al. Understanding the evolution of holoparasitic plants : the complete plastid genome of the holoparasite Cytinus hypocistis ( Cytinaceae ). Ann Bot. 2016;118:885–96.\nBarney CW, Hawksworth FG, Geils BW. Hosts of Viscum album. For Pathol. 1998;28:187–208.\nNickrent DL, Der JP, Anderson FE. Discovery of the photosynthetic relatives of the “Maltese mushroom” Cynomorium. BMC Evol Biol. 2005;5:38.\nGraham SW, Olmstead RIGO. Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms. Am J Bot. 2000;87:1712–30.\nDong W, Liu J, Yu J, Wang L, Zhou S. Highly variable chloroplast markers for evaluating plant phylogeny at low taxonomic levels and for DNA barcoding. PLoS One. 2012;7:1–9.\nMartin G, Aury J, Baurens F. The complete chloroplast genome of Banana (Musa acuminata , Zingiberales): insight into plastid monocotyledon evolution. PLoS One. 2013;8:e67350.\nChase MW, Christenhusz MJM, Fay MF, Byng JW, Judd WS, Soltis DE, et al. An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG IV. Bot J Linn Soc. 2016;181:1–20.\nHeath TA, Hedtke SM, Hillis DM. Taxon sampling and the accuracy of phylogenetic analyses. J Syst Evol. 2008;46:239–57.\nNabhan AR, Sarkar IN. The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy. Brief Bioinform. 2012;13:122–34.",{"VOID":1669},"10.1186\u002Fs12862-019-1401-8","https:\u002F\u002Fbmcecolevol.biomedcentral.com\u002Farticles\u002F10.1186\u002Fs12862-019-1401-8",[1672,1687,1700],{"id":1673,"sortIndex":32,"researcher":28,"roles":1674,"affiliations":1675,"properties":1684,"displayName":1686,"givenName":28,"familyName":28},"2871aa8c-4736-4ad9-880e-b62c1945db81",[962],[1676],{"id":1677,"sortIndex":32,"affiliation":1678,"properties":28},"62b644c1-1f30-4d26-a557-6197b9e078ec",{"id":1677,"createTime":28,"updateTime":28,"relativeEntities":1679,"slug":28,"properties":1680,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1683,"statistic":28},[],{"title":1681},{"VI":1682},"The Natural History Museum of Denmark, Faculty of Science, University of Copenhagen, Copenhagen K, Denmark",[],{"title":1685},{"VI":1686},"Athanasios Zervas",{"id":1688,"sortIndex":40,"researcher":28,"roles":1689,"affiliations":1690,"properties":1697,"displayName":1699,"givenName":28,"familyName":28},"40522461-0049-474a-9b88-4edca4491247",[962],[1691],{"id":1677,"sortIndex":32,"affiliation":1692,"properties":28},{"id":1677,"createTime":28,"updateTime":28,"relativeEntities":1693,"slug":28,"properties":1694,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1696,"statistic":28},[],{"title":1695},{"VI":1682},[],{"title":1698},{"VI":1699},"Gitte Petersen",{"id":1701,"sortIndex":123,"researcher":28,"roles":1702,"affiliations":1703,"properties":1710,"displayName":1712,"givenName":28,"familyName":28},"36b0c650-d7b5-4e63-a096-d294c8ed0989",[962],[1704],{"id":1677,"sortIndex":32,"affiliation":1705,"properties":28},{"id":1677,"createTime":28,"updateTime":28,"relativeEntities":1706,"slug":28,"properties":1707,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1709,"statistic":28},[],{"title":1708},{"VI":1682},[],{"title":1711},{"VI":1712},"Ole Seberg",{"url":1670,"publisher":1714,"properties":1733},{"id":868,"createTime":869,"updateTime":870,"relativeEntities":1715,"slug":872,"properties":1716,"entityType":25,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":32,"subjectFields":1719,"manageAffiliations":1720,"indexDatabases":1721,"url":28,"thumbnailPath":28,"statistic":1728,"gsStatistic":28,"type":28,"analyzePriority":28},[],{"title":1717,"eissn":1718},{"EN":875},{"VOID":877},[],[],[1722],{"id":883,"indexDatabase":1723,"url":889,"indexYears":890,"academicFieldIds":28,"indexDatabaseRanking":891},{"id":775,"createTime":28,"updateTime":28,"relativeEntities":1724,"label":1725,"description":1726,"key":781,"publicationTags":1727,"standard":28},[],{"EN":778,"VI":778},{"EN":778,"VI":780},[783],{"impactFactor":32,"impactFactorByYear":1729,"i10Index":903,"i10IndexLast5Year":140,"totalPublication":595,"totalPublicationByYear":1730,"totalCitation":905,"totalCitationByYear":1731,"totalCitationPerPublication":923,"totalCitationPerPublicationByYear":1732,"hindexLast5Year":688,"hindex":688},{"2012":894,"2013":895,"2014":896,"2015":593,"2016":897,"2017":898,"2018":899,"2019":900,"2020":901,"2021":902,"2022":42},{"2005":49,"2006":45,"2007":47,"2008":147,"2009":323,"2010":128,"2011":196,"2012":122,"2013":146,"2014":131,"2015":152,"2016":148,"2017":137,"2018":136,"2019":352,"2020":122},{"2005":907,"2006":908,"2007":909,"2008":910,"2009":911,"2010":912,"2011":913,"2012":914,"2013":915,"2014":916,"2015":917,"2016":918,"2017":919,"2018":920,"2019":921,"2020":922},{"2005":925,"2006":361,"2007":926,"2008":927,"2009":928,"2010":929,"2011":930,"2012":931,"2013":932,"2014":140,"2015":933,"2016":934,"2017":935,"2018":936,"2019":937,"2020":938},{"pages":1734,"volume":1735},{"VOID":1487},{"VOID":1736},"19","2019-04-08",2019,[891],{"id":1741,"createTime":1742,"updateTime":1743,"relativeEntities":1744,"slug":1745,"properties":1746,"entityType":956,"verifyStatus":26,"verifyTime":1743,"verifyNote":1078,"languages":28,"translateLanguages":28,"viewCount":32,"primaryUrl":1755,"fullTextUrl":28,"authors":1756,"publicationType":1033,"publisherRelationship":1861,"citationCount":28,"citationInfo":28,"publishDate":1885,"publishYear":1886,"citationAnalyzeStatus":878,"lastCitationAnalyze":28,"indexDatabases":1887,"openAccess":28,"references":28,"isForceReanalyzing":1062},"0047dc17-e47f-4aec-9c9a-e31cdce43b33","2023-12-06T17:42:40.211+00:00","2025-01-16T19:27:06.771+00:00",[],"Double-maternal-effect-duplicated-nucleoplasmin-2-genes-npm2a-and-npm2b-with-essential-but-distinct-functions-are-shared-by-fish-and-tetrapods",{"abstract":1747,"title":1749,"references":1751,"doi":1753},{"EN":1748},"Nucleoplasmin 2 (npm2) is an essential maternal-effect gene that mediates early embryonic events through its function as a histone chaperone that remodels chromatin. Recently, two npm2 (npm2a and npm2b) genes have been annotated in zebrafish. Thus, we examined the evolution of npm2a and npm2b in a variety of vertebrates, their potential phylogenetic relationships, and their biological functions using knockout models via the CRISPR\u002Fcas9 system. We demonstrated that the two npm2 duplicates exist in a wide range of vertebrates, including sharks, ray-finned fish, amphibians, and sauropsids, while npm2a was lost in coelacanth and mammals, as well as some specific teleost lineages. Using phylogeny and synteny analyses, we traced their origins to the early stages of vertebrate evolution. Our findings suggested that npm2a and npm2b resulted from an ancient local gene duplication, and their functions diverged although key protein domains were conserved. We then investigated their functions by examining their tissue distribution in a wide variety of species and found that they shared ovarian-specific expression, a key feature of maternal-effect genes. We also demonstrated that both npm2a and npm2b are maternally-inherited transcripts in vertebrates, and that they play essential, but distinct, roles in early embryogenesis using zebrafish knockout models. Both npm2a and npm2b function early during oogenesis and may play a role in cortical granule function that impact egg activation and fertilization, while npm2b is also involved in early embryogenesis. These novel findings will broaden our knowledge on the evolutionary history of maternal-effect genes and underlying mechanisms that contribute to vertebrate reproductive success. In addition, our results demonstrate the existence of a newly described maternal-effect gene, npm2a, that contributes to egg competence, an area that still requires further comprehension.",{"EN":1750},"Double maternal-effect: duplicated nucleoplasmin 2 genes, npm2a and npm2b, with essential but distinct functions are shared by fish and tetrapods",{"VOID":1752},"Baroux C, Autran D, Gillmor CS, Grimanelli D, Grossniklaus U. The maternal to zygotic transition in animals and plants. Cold Spring Harb Symp Quant Biol. 2008;73:89–100.\nLindeman RE, Pelegri F. Vertebrate maternal-effect genes: insights into fertilization, early cleavage divisions, and germ cell determinant localization from studies in the zebrafish. Mol Reprod Dev. 2010;77:299–313.\nLee MT, Bonneau AR, Takacs CM, et al. Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition. Nature. 2013;503:360–4.\nBouchareb A, Le Cam A, Montfort J, et al. Genome-wide identification of novel ovarian-predominant miRNAs: new insights from the medaka (Oryzias latipes). Sci Rep. 2017;7:40241.\nBouleau A, Desvignes T, Traverso JM, et al. Maternally inherited npm2 mRNA is crucial for egg developmental competence in zebrafish. Biol Reprod. 2014;91:43.\nLaskey RA, Honda BM, Mills AD, Finch JT. Nucleosomes are assembled by an acidic protein which binds histones and transfers them to DNA. Nature. 1978;275:416–20.\nLaskey RA, Earnshaw WC. Nucleosome assembly. Nature. 1980;286:763–7.\nMills AD, Laskey RA, Black P, De Robertis EM. An acidic protein which assembles nucleosomes in vitro is the most abundant protein in Xenopus oocyte nuclei. J Mol Biol. 1980;139:561–8.\nPhilpott A, Leno GH, Laskey RA. Sperm decondensation in Xenopus egg cytoplasm is mediated by nucleoplasmin. Cell. 1991;65:569–78.\nPhilpott A, Leno GH. Nucleoplasmin remodels sperm chromatin in Xenopus egg extracts. Cell. 1992;69:759–67.\nBurns KH, Viveiros MM, Ren Y, et al. Roles of NPM2 in chromatin and nucleolar organization in oocytes and embryos. Science (80-). 2003;300:633–6.\nDehal P, Boore JL. Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biol. 2005;3:e314.\nVan de Peer Y, Maere S, Meyer A. The evolutionary significance of ancient genome duplications. Nat Rev Genet. 2009;10:725–32.\nEirin-Lopez JM, Frehlick LJ, Ausio J. Long-term evolution and functional diversification in the members of the nucleophosmin\u002Fnucleoplasmin family of nuclear chaperones. Genetics. 2006;173:1835–50.\nFrehlick LJ, Eirin-Lopez JM, Jeffery ED, Hunt DF, Ausio J. The characterization of amphibian nucleoplasmins yields new insight into their role in sperm chromatin remodeling. BMC Genomics. 2006;7:99.\nWotton KR, Weierud FK, Dietrich S, Lewis KE. Comparative genomics of Lbx loci reveals conservation of identical Lbx ohnologs in bony vertebrates. BMC Evol Biol. 2008;8:171.\nJovelin R, Yan YL, He X, et al. Evolution of developmental regulation in the vertebrate FgfD subfamily. J Exp Zool B Mol Dev Evol. 2010;314:33–56.\nGlasauer SM, Neuhauss SC. Whole-genome duplication in teleost fishes and its evolutionary consequences. Mol Gen Genomics. 2014;289:1045–60.\nVolff JN. Genome evolution and biodiversity in teleost fish. Hered. 2005;94:280–94.\nBerthelot C, Brunet F, Chalopin D, et al. The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates. Nat Commun. 2014;5:3657.\nPasquier J, Cabau C, Nguyen T, et al. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. BMC Genomics. 2016;17:368.\nDesvignes T, Fostier A, Fauvel C, Bobe J. The Nme gene family in fish. Fish Physiol Biochem. 39:53–8.\nKimmel CB, Ballard WW, Kimmel SR, Ullmann B, Schilling TF. Stages of embryonic development of the zebrafish. Dev Dyn. 1995;203:253–310.\nSelman K, Wallace RA, Sarka A, Qi X. Stages of oocyte development in the zebrafish, Brachydanio rerio. J Morphol. 1993;218:203–24.\nSession AM, Uno Y, Kwon T, et al. Genome evolution in the allotetraploid frog Xenopus laevis. Nature. 2016;538:336–43.\nNear TJ, Eytan RI, Dornburg A, et al. Resolution of ray-finned fish phylogeny and timing of diversification. Proc Natl Acad Sci U S A. 2012;109:13698–703.\nTadros W, Lipshitz HD. The maternal-to-zygotic transition: a play in two acts. Development. 2009;136:3033–42.\nLaskey RA, Mills AD, Philpott A, Leno GH, Dilworth SM, Dingwall C. The role of nucleoplasmin in chromatin assembly and disassembly. Philos Trans R Soc L B Biol Sci. 1993;339:263–9.\nPrado A, Ramos I, Frehlick LJ, Muga A, Ausio J. Nucleoplasmin: a nuclear chaperone. Biochem Cell Biol. 2004;82:437–45.\nDe La Fuente R, Viveiros MM, Burns KH, Adashi EY, Matzuk MM, Eppig JJ. Major chromatin remodeling in the germinal vesicle (GV) of mammalian oocytes is dispensable for global transcriptional silencing but required for centromeric heterochromatin function. Dev Biol. 2004;275:447–58.\nLee HH, Kim HS, Kang JY, et al. Crystal structure of human nucleophosmin-core reveals plasticity of the pentamer-pentamer interface. Proteins. 2007;69:672–8.\nPlatonova O, Akey IV, Head JF, Akey CW. Crystal structure and function of human nucleoplasmin (npm2): a histone chaperone in oocytes and embryos. Biochemistry. 2011;50:8078–89.\nOkuwaki M, Sumi A, Hisaoka M, et al. Function of homo- and hetero-oligomers of human nucleoplasmin\u002Fnucleophosmin family proteins NPM1, NPM2 and NPM3 during sperm chromatin remodeling. Nucleic Acids Res. 2012;40:4861–78.\nLingenfelter BM, Tripurani SK, Tejomurtula J, Smith GW, Yao J. Molecular cloning and expression of bovine nucleoplasmin 2 (NPM2): a maternal effect gene regulated by miR-181a. Reprod Biol Endocrinol. 2011;9:40.\nNamboodiri VM, Akey IV, Schmidt-Zachmann MS, Head JF, Akey CW. The structure and function of Xenopus NO38-core, a histone chaperone in the nucleolus. Structure. 2004;12:2149–60.\nDutta S, Akey IV, Dingwall C, et al. The crystal structure of nucleoplasmin-core: implications for histone binding and nucleosome assembly. Mol Cell. 2001;8:841–53.\nRamos I, Fernandez-Rivero N, Arranz R, et al. The intrinsically disordered distal face of nucleoplasmin recognizes distinct oligomerization states of histones. Nucleic Acids Res. 2014;42:1311–25.\nSalvany L, Chiva M, Arnan C, Ausio J, Subirana JA, Saperas N. Mutation of the small acidic tract A1 drastically reduces nucleoplasmin activity. FEBS Lett. 2004;576:353–7.\nBurglin TR, Mattaj IW, Newmeyer DD, Zeller R, De Robertis EM. Cloning of nucleoplasmin from Xenopus laevis oocytes and analysis of its developmental expression. Genes Dev. 1987;1:97–107.\nOnikubo T, Nicklay JJ, Xing L, et al. Developmentally regulated post-translational modification of Nucleoplasmin controls histone sequestration and deposition. In: Cell Rep; 2015.\nDingwall C, Dilworth SM, Black SJ, Kearsey SE, Cox LS, Laskey RA. Nucleoplasmin cDNA sequence reveals polyglutamic acid tracts and a cluster of sequences homologous to putative nuclear localization signals. EMBO J. 1987;6:69–74.\nBanuelos S, Hierro A, Arizmendi JM, Montoya G, Prado A, Muga A. Activation mechanism of the nuclear chaperone nucleoplasmin: role of the core domain. J Mol Biol. 2003;334:585–93.\nTaneva SG, Banuelos S, Falces J, et al. A mechanism for histone chaperoning activity of nucleoplasmin: thermodynamic and structural models. J Mol Biol. 2009;393:448–63.\nFernandez-Rivero N, Franco A, Velazquez-Campoy A, Alonso E, Muga A, Prado A. A quantitative characterization of Nucleoplasmin\u002Fhistone complexes reveals chaperone versatility. Sci Rep. 2016;6:32114.\nHarvey SA, Sealy I, Kettleborough R, et al. Identification of the zebrafish maternal and paternal transcriptomes. Development. 2013;140:2703–10.\nAuer TO, Duroure K, De Cian A, Concordet JP, Del Bene F. Highly efficient CRISPR\u002FCas9-mediated knock-in in zebrafish by homology-independent DNA repair. Genome Res. 2014;24:142–53.\nGagnon JA, Valen E, Thyme SB, et al. Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs. PLoS One. 2014;9:e98186.\nDekens MP, Pelegri FJ, Maischein HM, Nusslein-Volhard C. The maternal-effect gene futile cycle is essential for pronuclear congression and mitotic spindle assembly in the zebrafish zygote. Development. 2003;130:3907–16.\nKanagaraj P, Gautier-Stein A, Riedel D, et al. Souffle\u002FSpastizin Controls Secretory Vesicle Maturation during Zebrafish Oogenesis. PLoS Genet. 2014;10:e1004449.\nEno C, Solanki B, Pelegri F. Aura\u002Fmid1ip1L regulates the cytoskeleton at the zebrafish egg-to-embryo transition. Development. 2016;1:1585–99.\nMei W, Lee KW, Marlow FL, Miller AL, Mullins MC. hnRNP I is required to generate the Ca2+ signal that causes egg activation in zebrafish. Development. 2009;136:3007–17.\nLi L, Baibakov B, Dean J. A subcortical maternal complex essential for preimplantation mouse embryogenesis. Dev Cell. 2008;15:416–25.\nXu Q, Wang F, Xiang Y, et al. Maternal BCAS2 protects genomic integrity in mouse early embryonic development. Development. 2015;142:3943–53.\nYabe T, Ge X, Pelegri F. The zebrafish maternal-effect gene cellular atoll encodes the centriolar component sas-6 and defects in its paternal function promote whole genome duplication. Dev Biol. 2007;312:44–60.",{"VOID":1754},"10.1186\u002Fs12862-018-1281-3","https:\u002F\u002Fbmcevolbiol.biomedcentral.com\u002Farticles\u002F10.1186\u002Fs12862-018-1281-3",[1757,1772,1785,1798,1811,1826,1839],{"id":1758,"sortIndex":32,"researcher":28,"roles":1759,"affiliations":1760,"properties":1769,"displayName":1771,"givenName":28,"familyName":28},"edecce5b-8b44-4716-a0fe-31e004884a40",[962],[1761],{"id":1762,"sortIndex":32,"affiliation":1763,"properties":28},"37a2404b-e4b9-433a-bd96-20e257ce76b5",{"id":1762,"createTime":28,"updateTime":28,"relativeEntities":1764,"slug":28,"properties":1765,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1768,"statistic":28},[],{"title":1766},{"VI":1767},"INRA LPGP UR1037, Rennes, France",[],{"title":1770},{"VI":1771},"Caroline T. Cheung",{"id":1773,"sortIndex":40,"researcher":28,"roles":1774,"affiliations":1775,"properties":1782,"displayName":1784,"givenName":28,"familyName":28},"1dd9188c-b4f9-432c-9169-562bfb55c6f3",[962],[1776],{"id":1762,"sortIndex":32,"affiliation":1777,"properties":28},{"id":1762,"createTime":28,"updateTime":28,"relativeEntities":1778,"slug":28,"properties":1779,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1781,"statistic":28},[],{"title":1780},{"VI":1767},[],{"title":1783},{"VI":1784},"Jérémy Pasquier",{"id":1786,"sortIndex":123,"researcher":28,"roles":1787,"affiliations":1788,"properties":1795,"displayName":1797,"givenName":28,"familyName":28},"ac012e30-3920-4653-bb8b-462ee92747ee",[962],[1789],{"id":1762,"sortIndex":32,"affiliation":1790,"properties":28},{"id":1762,"createTime":28,"updateTime":28,"relativeEntities":1791,"slug":28,"properties":1792,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1794,"statistic":28},[],{"title":1793},{"VI":1767},[],{"title":1796},{"VI":1797},"Aurélien Bouleau",{"id":1799,"sortIndex":42,"researcher":28,"roles":1800,"affiliations":1801,"properties":1808,"displayName":1810,"givenName":28,"familyName":28},"15b98764-b775-4fa0-9e0c-55a4b0a573c5",[962],[1802],{"id":1762,"sortIndex":32,"affiliation":1803,"properties":28},{"id":1762,"createTime":28,"updateTime":28,"relativeEntities":1804,"slug":28,"properties":1805,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1807,"statistic":28},[],{"title":1806},{"VI":1767},[],{"title":1809},{"VI":1810},"Thaovi Nguyen",{"id":1812,"sortIndex":45,"researcher":28,"roles":1813,"affiliations":1814,"properties":1823,"displayName":1825,"givenName":28,"familyName":28},"938b5674-991f-49d9-9fd0-e8b25d4b7b84",[962],[1815],{"id":1816,"sortIndex":32,"affiliation":1817,"properties":28},"ac44a4ba-4daa-4d4f-8fec-e4ea48a6ec4e",{"id":1816,"createTime":28,"updateTime":28,"relativeEntities":1818,"slug":28,"properties":1819,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1822,"statistic":28},[],{"title":1820},{"VI":1821},"CNRS\u002FUMR6290, Université de Rennes 1, Rennes, France",[],{"title":1824},{"VI":1825},"Franck Chesnel",{"id":1827,"sortIndex":46,"researcher":28,"roles":1828,"affiliations":1829,"properties":1836,"displayName":1838,"givenName":28,"familyName":28},"be7c7ead-048f-407f-90bc-751de6390da2",[962],[1830],{"id":1762,"sortIndex":32,"affiliation":1831,"properties":28},{"id":1762,"createTime":28,"updateTime":28,"relativeEntities":1832,"slug":28,"properties":1833,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1835,"statistic":28},[],{"title":1834},{"VI":1767},[],{"title":1837},{"VI":1838},"Yann Guiguen",{"id":1840,"sortIndex":48,"researcher":28,"roles":1841,"affiliations":1842,"properties":1858,"displayName":1860,"givenName":28,"familyName":28},"fda9db3d-9b1a-4e02-8789-6a0683ccde91",[962],[1843,1849],{"id":1762,"sortIndex":32,"affiliation":1844,"properties":28},{"id":1762,"createTime":28,"updateTime":28,"relativeEntities":1845,"slug":28,"properties":1846,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1848,"statistic":28},[],{"title":1847},{"VI":1767},[],{"id":1850,"sortIndex":40,"affiliation":1851,"properties":1857},"00e3ecab-59f5-48c6-a8d8-9f356398213b",{"id":1850,"createTime":28,"updateTime":28,"relativeEntities":1852,"slug":28,"properties":1853,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1856,"statistic":28},[],{"title":1854},{"VI":1855},"Laboratory of fish physiology and genomics (LPGP), National Institute of Agricultural Research (INRA), Rennes Cedex, France",[],{},{"title":1859},{"VI":1860},"Julien Bobe",{"url":1755,"publisher":1862,"properties":1881},{"id":868,"createTime":869,"updateTime":870,"relativeEntities":1863,"slug":872,"properties":1864,"entityType":25,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":32,"subjectFields":1867,"manageAffiliations":1868,"indexDatabases":1869,"url":28,"thumbnailPath":28,"statistic":1876,"gsStatistic":28,"type":28,"analyzePriority":28},[],{"title":1865,"eissn":1866},{"EN":875},{"VOID":877},[],[],[1870],{"id":883,"indexDatabase":1871,"url":889,"indexYears":890,"academicFieldIds":28,"indexDatabaseRanking":891},{"id":775,"createTime":28,"updateTime":28,"relativeEntities":1872,"label":1873,"description":1874,"key":781,"publicationTags":1875,"standard":28},[],{"EN":778,"VI":778},{"EN":778,"VI":780},[783],{"impactFactor":32,"impactFactorByYear":1877,"i10Index":903,"i10IndexLast5Year":140,"totalPublication":595,"totalPublicationByYear":1878,"totalCitation":905,"totalCitationByYear":1879,"totalCitationPerPublication":923,"totalCitationPerPublicationByYear":1880,"hindexLast5Year":688,"hindex":688},{"2012":894,"2013":895,"2014":896,"2015":593,"2016":897,"2017":898,"2018":899,"2019":900,"2020":901,"2021":902,"2022":42},{"2005":49,"2006":45,"2007":47,"2008":147,"2009":323,"2010":128,"2011":196,"2012":122,"2013":146,"2014":131,"2015":152,"2016":148,"2017":137,"2018":136,"2019":352,"2020":122},{"2005":907,"2006":908,"2007":909,"2008":910,"2009":911,"2010":912,"2011":913,"2012":914,"2013":915,"2014":916,"2015":917,"2016":918,"2017":919,"2018":920,"2019":921,"2020":922},{"2005":925,"2006":361,"2007":926,"2008":927,"2009":928,"2010":929,"2011":930,"2012":931,"2013":932,"2014":140,"2015":933,"2016":934,"2017":935,"2018":936,"2019":937,"2020":938},{"pages":1882,"volume":1883},{"VOID":1362},{"VOID":1884},"18","2018-11-12",2018,[891],{"id":1889,"createTime":1890,"updateTime":1891,"relativeEntities":1892,"slug":1893,"properties":1894,"entityType":956,"verifyStatus":26,"verifyTime":1891,"verifyNote":1078,"languages":28,"translateLanguages":28,"viewCount":32,"primaryUrl":1903,"fullTextUrl":28,"authors":1904,"publicationType":1033,"publisherRelationship":1964,"citationCount":28,"citationInfo":28,"publishDate":1989,"publishYear":1990,"citationAnalyzeStatus":878,"lastCitationAnalyze":28,"indexDatabases":1991,"openAccess":28,"references":28,"isForceReanalyzing":1062},"005ba0fd-bdf5-4970-82dd-0cdfb7b3070a","2023-12-26T08:07:07.287+00:00","2024-12-02T18:02:36.699+00:00",[],"Habitat-shifts-in-the-evolutionary-history-of-a-Neotropical-flycatcher-lineage-from-forest-and-open-landscapes",{"abstract":1895,"title":1897,"references":1899,"doi":1901},{"EN":1896},"Little is known about the role ecological shifts play in the evolution of Neotropical radiations that have colonized a variety of environments. We here examine habitat shifts in the evolutionary history of Elaenia flycatchers, a Neotropical bird lineage that lives in a range of forest and open habitats. We evaluate phylogenetic relationships within the genus based on mitochondrial and nuclear DNA sequence data, and then employ parsimony-based and Bayesian methods to reconstruct preferences for a number of habitat types and migratory behaviour throughout the evolutionary history of the genus. Using a molecular clock approach, we date the most important habitat shifts. Our analyses resolve phylogenetic relationships among Elaenia species and confirm several species associations predicted by morphology while furnishing support for other taxon placements that are in conflict with traditional classification, such as the elevation of various Elaenia taxa to species level. While savannah specialism is restricted to one basal clade within the genus, montane forest was invaded from open habitat only on a limited number of occasions. Riparian growth may have been favoured early on in the evolution of the main Elaenia clade and subsequently been deserted on several occasions. Austral long-distance migratory behaviour evolved on several occasions. Ancestral reconstructions of habitat preferences reveal pronounced differences not only in the timing of the emergence of certain habitat preferences, but also in the frequency of habitat shifts. The early origin of savannah specialism in Elaenia highlights the importance of this habitat in Neotropical Pliocene and late Miocene biogeography. While forest in old mountain ranges such as the Tepuis and the Brazilian Shield was colonized early on, the most important colonization event of montane forest was in conjunction with Pliocene Andean uplift. Riparian habitats may have played an important role in facilitating habitat shifts by birds expanding up the mountains along streams and adapting to newly emerging montane forest habitat.",{"EN":1898},"Habitat shifts in the evolutionary history of a Neotropical flycatcher lineage from forest and open landscapes",{"VOID":1900},"Ribas CC, Moyle RG, Miyaki CY, Cracraft J: The assembly of montane biotas: linking Andean tectonics and climatic oscillations to independent regimes of diversification in Pionus parrots. Proc R Soc B. 2007, 274: 2399-2408. 10.1098\u002Frspb.2007.0613.\nCadena CD, Klicka J, Ricklefs RE: Evolutionary differentiation in the Neotropical montane region: Molecular phylogenetics and phylogeography of Buarremon brush-finches (Aves, Emberizidae). Mol Phylogenet Evol. 2007, 44: 993-1016. 10.1016\u002Fj.ympev.2006.12.012.\nBrumfield RT, Edwards SV: Evolution into and out of the Andes: a Bayesian analysis of historical diversification in Thamnophilus antshrikes. Evolution. 2007, 61: 346-367. 10.1111\u002Fj.1558-5646.2007.00039.x.\nRibas CC, Miyaki CY: Molecular systematics in Aratinga parakeets: species limits and historical biogeography in the solstitialis group, and the systematic position of Nandayus nenday. Mol Phylogenet Evol. 2006, 30: 663-675. 10.1016\u002FS1055-7903(03)00223-9.\nWeigt LA, Crawford AJ, Rand AS, Ryan MJ: Biogeography of the túngara frog Physalaemus pustulosus : a molecular perspective. Mol Ecol. 2005, 14: 3857-3876. 10.1111\u002Fj.1365-294X.2005.02707.x.\nAleixo A: Historical diversification of a terra-firme forest bird superspecies: a phylogeographic perspective on the role of different hypotheses of Amazonian diversification. Evolution. 2004, 58: 1303-1317.\nDick CW, Abdul-Salim K, Bermingham E: Molecular systematic analysis reveals cryptic tertiary diversification of a widespread tropical rain forest tree. Am Nat. 2003, 162: 691-703. 10.1086\u002F379795.\nDick CW, Roubik DW, Gruber KF, Bermingham E: Long-distance gene flow and cross-Andean dispersal of lowland rainforest bees (Apidae: Euglossini) revealed by comparative mitochondrial DNA phylogeography. Mol Ecol. 2004, 13: 3775-3785. 10.1111\u002Fj.1365-294X.2004.02374.x.\nBurns KJ, Naoki K: Molecular phylogenetics and phylogeography of tanagers in the genus Tangara. Mol Phylogenet Evol. 2004, 32: 838-854. 10.1016\u002Fj.ympev.2004.02.013.\nCheviron ZA, Capparella AP, Vuilleumier F: Molecular and phylogenetic relationships among the Geositta miners (Furnariidae) and biogeographic implications for avian speciation in Fuego-Patagonia. Auk. 2005, 122: 158-174. 10.1642\u002F0004-8038(2005)122[0158:MPRATG]2.0.CO;2.\nChesser RT: Evolution in the high Andes: the phylogenetics of Muscisaxicola ground-tyrants. Mol Phylogenet Evol. 2000, 15: 369-380. 10.1006\u002Fmpev.1999.0774.\nVoelker G: Dispersal, vicariance and clocks: historical biogeography and speciation in a cosmopolitan passerine genus (Anthus: Motacillidae). Evolution. 1999, 53: 1536-1552. 10.2307\u002F2640899.\nArbogast BS, Drovetski SV, Curry RL, Boag PT, Seutin G, Grant PR, Grant BR, Anderson DJ: The origin and diversification of Galapagos mockingbirds. Evolution. 2006, 60: 370-382.\nPagel M, Meade A, Barker D: Bayesian estimation of ancestral character states on phylogenies. Syst Biol. 2004, 53: 673-684. 10.1080\u002F10635150490522232.\nRidgely RS, Tudor G: The Birds of South America. The Suboscine Passerines. 1994, Oxford: Oxford University Press, II:\nHosner PA: Genus Elaenia. Handbook of the Birds of the World. Cotingas to Pipits and Wagtails. Edited by: del Hoyo J, Elliott A, Christie DA. 2004, Barcelona: Lynx Edicions, 9:\nRheindt FE, Norman JA, Christidis L: Phylogenetic relationships of tyrant-flycatchers (Aves; Tyrannidae), with an emphasis on the elaeniine assemblage. Mol Phylogenet Evol. 2008, 46: 88-101. 10.1016\u002Fj.ympev.2007.09.011. (DOI: 10.1016\u002Fj.ympev.2007.09.011).\nZimmer JT: Studies of Peruvian birds. No. XXXVI. The genera Elaenia and Myiopagis. American Museum Novitates. 1941, 1108: 1-23.\nTraylor MA: Notes on tyrant-flycatchers (Aves: Tyrannidae). Fieldiana Zoology (New Series 13). 1982, 1338: 1-22.\nJoseph L, Wilke T, Alpers D: Independent evolution of migration on the South American landscape in a long-distnce temperate-tropical migratory bird, Swainson's flycatcher (Myiarchus swainsoni). J Biogeogr. 2003, 30: 925-937. 10.1046\u002Fj.1365-2699.2003.00841.x.\nLovette IJ: Mitochondrial dating and mixed support for the \"2% rule\" in birds. Auk. 2004, 121: 1-6. 10.1642\u002F0004-8038(2004)121[0001:MDAMSF]2.0.CO;2.\nGarcía-Moreno J: Is there a universal mtDNA clock for birds?. J Avian Biol. 2004, 35: 465-468. 10.1111\u002Fj.0908-8857.2004.03316.x.\nTownsend Peterson A: Application of molecular clocks in ornithology revisited. J Avian Biol. 2006, 37: 541-544. 10.1111\u002Fj.0908-8857.2006.04029.x.\nPereira SL, Baker AJ: A mitogenomic timescale for birds detects variable phylogenetic rates of molecular evolution and refutes the standard molecular clock. Mol Biol Evol. 2006, 23 (9): 1731-1740. 10.1093\u002Fmolbev\u002Fmsl038.\nFleischer RC, McIntosh CE, Tarr CL: Evolution on a volcanic conveyor belt: Using phylogenetic reconstructions and K-Ar-based ages of the Hawaiian Islands to estimate molecular evolutionary rates. Mol Ecol. 1998, 7: 533-545. 10.1046\u002Fj.1365-294x.1998.00364.x.\nFleischer RC, Kirchman JJ, Dumbacher JP, Bevier L, Dove C, Rotzel NC, Edwards SV, Lammertink M, Miglia KJ, Moore WS: Mid-Pleistocene divergence of Cuban and North American ivory-billed woodpeckers. Biol Letters. 2006, 2: 466-469. 10.1098\u002Frsbl.2006.0490.\nShields GF, Wilson AC: Calibration of mitochondrial DNA evolution in geese. J Mol Evol. 1987, 24: 212-217. 10.1007\u002FBF02111234.\nTarr CL, Fleischer RC: Mitochondrial-DNA variation and evolutionary relationships in the amakihi complex. Auk. 1993, 110: 825-831.\nWeir JT, Schluter D: Calibrating the avian molecular clock. Mol Ecol. 2008, 17: 2321-2328. 10.1111\u002Fj.1365-294X.2008.03742.x.\nCampbell KE, Frailey CD, Romero-Pittman L: The Pan-Amazonian Ucayali Peneplain, late Neogene sedimentation in Amazonia, and the birth of the modern Amazon River system. Palaeogeogr Palaeoclimatol Palaeoecol. 2006, 239: 166-219. 10.1016\u002Fj.palaeo.2006.01.020.\nGregory-Wodzicki KM: Uplift history of the Central and Northern Andes: A review. GSA Bulletin. 2000, 112: 1091-1105.\nGregory-Wodzicki KM: A late Miocene subtropical-dry flora from the northern Altiplano, Bolivia. Palaeogeogr Palaeoclimatol Palaeoecol. 2002, 180: 331-348. 10.1016\u002FS0031-0182(01)00434-5.\nBarrett PJ, Adams CJ, McIntosh WC, Swisher CC, Wilson GS: Geochronological evidence supporting Antarctic deglaciation three million years ago. Nature. 1992, 359: 816-818. 10.1038\u002F359816a0.\nBarron JA: Diatom constraints on the position of the Antarctic polar front in the middle part of the Pliocene. Mar Micropaleont. 1996, 27: 195-204. 10.1016\u002F0377-8398(95)00060-7.\nDowsett H, Barron J, Poore R: Middle Pliocene sea surface temperatures: a global reconstruction. Mar Micropaleont. 1996, 27: 13-25. 10.1016\u002F0377-8398(95)00050-X.\nFleming RF, Barron JA: Evidence of Pliocene Nothofagus in Antarctica from Pliocene marine sedimentary deposits (DSDP Site 274). Mar Micropaleont. 1996, 27: 227-236. 10.1016\u002F0377-8398(95)00062-3.\nThompson RS, Fleming RF: Middle Pliocene vegetation: reconstructions, paleoclimatic inferences, and boundary conditions for climate modeling. Mar Micropaleont. 1996, 27: 27-49. 10.1016\u002F0377-8398(95)00051-8.\nMolnar P, Cane MA: El Niño's tropical climate and teleconnections as a blueprint for pre-Ice-Age climates. Paleoceanography. 2002, 17: 1-11. 10.1029\u002F2001PA000663.\nAshworth AC, Thompson FC: A fly in the biogeographic ointment. Nature. 2003, 423: 135-136. 10.1038\u002F423135a.\nHaq BU, Hardenbol J, Vail PR: Chronology of fluctuating sea levels since the Triassic. Science. 1987, 235: 1156-1167. 10.1126\u002Fscience.235.4793.1156.\nKeigwin L: Isotopic paleoceanography of the Caribbean and East Pacific: role of Panama uplift in late Neogene time. Science. 1982, 217: 350-353. 10.1126\u002Fscience.217.4557.350.\nCoates AG, Jackson JBC, Collins LS, Cronin TM, Dowsett HJ, Bybell LM, Jung P, Obando JA: Closure of the Isthmus of Panama: The near-shore marine record of Costa Rica and western Panama. GSA Bulletin. 1992, 104: 814-828.\nTello JG, Bates JM: Molecular phylogenetics of the tody-tyrant and flatbill assemblage of tyrant flycatchers (Tyrannidae). Auk. 2007, 124: 134-154. 10.1642\u002F0004-8038(2007)124[134:MPOTTA]2.0.CO;2.\nSwofford DL: PAUP*: Phylogenetic analysis using parsimony (* and other methods), version 4.0. 2002, Sunderland, Massachusetts: Sinauer Associates\nPosada D, Crandall KA: MODELTEST: testing the model of DNA substitution. Bioinformatics. 1998, 14: 817-818. 10.1093\u002Fbioinformatics\u002F14.9.817.\nRonquist F, Huelsenbeck JP: MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 2003, 19: 1572-1574. 10.1093\u002Fbioinformatics\u002Fbtg180.\nRonquist F, Huelsenbeck JP, Mark van der P: MrBayes 3.1 Manual. 2005, [http:\u002F\u002Fmrbayes.csit.fsu.edu\u002Fmanual.php]\nMaddison WP: A method for testing the correlated evolution of two binary characters: are gains and losses concentrated on certain branches of a phylogenetic tree. Evolution. 1990, 44: 539-557. 10.2307\u002F2409434.\nMaddison DR, Maddison WP: MacClade: analysis of phylogeny and character evolution. Vers. 4.0. 2000, Sunderland, Massachusetts: Sinauer Associates",{"VOID":1902},"10.1186\u002F1471-2148-8-193","https:\u002F\u002Fbmcecolevol.biomedcentral.com\u002Farticles\u002F10.1186\u002F1471-2148-8-193",[1905,1929,1951],{"id":1906,"sortIndex":32,"researcher":28,"roles":1907,"affiliations":1908,"properties":1926,"displayName":1928,"givenName":28,"familyName":28},"a45922a3-937e-457f-8100-03b37c874ccd",[962],[1909,1917],{"id":1910,"sortIndex":32,"affiliation":1911,"properties":28},"89f8d249-7403-4e65-9a91-1e1d10d36b53",{"id":1910,"createTime":28,"updateTime":28,"relativeEntities":1912,"slug":28,"properties":1913,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1916,"statistic":28},[],{"title":1914},{"VI":1915},"Department of Genetics, University of Melbourne, Melbourne, Australia",[],{"id":1918,"sortIndex":40,"affiliation":1919,"properties":1925},"c87086ec-3220-4533-ad28-b62d8246f802",{"id":1918,"createTime":28,"updateTime":28,"relativeEntities":1920,"slug":28,"properties":1921,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1924,"statistic":28},[],{"title":1922},{"VI":1923},"Population Ecology and Genetics Unit, Sciences Department, Museum Victoria, Carlton, Australia",[],{},{"title":1927},{"VI":1928},"Frank E Rheindt",{"id":1930,"sortIndex":40,"researcher":28,"roles":1931,"affiliations":1932,"properties":1948,"displayName":1950,"givenName":28,"familyName":28},"3e83e099-8661-4b82-80e5-a87a163b32ec",[962],[1933,1939],{"id":1910,"sortIndex":32,"affiliation":1934,"properties":28},{"id":1910,"createTime":28,"updateTime":28,"relativeEntities":1935,"slug":28,"properties":1936,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1938,"statistic":28},[],{"title":1937},{"VI":1915},[],{"id":1940,"sortIndex":40,"affiliation":1941,"properties":1947},"54ae937f-f2b3-4b96-9f9b-87400ed2010f",{"id":1940,"createTime":28,"updateTime":28,"relativeEntities":1942,"slug":28,"properties":1943,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1946,"statistic":28},[],{"title":1944},{"VI":1945},"Australian Museum, Sydney, Australia",[],{},{"title":1949},{"VI":1950},"Les Christidis",{"id":1952,"sortIndex":123,"researcher":28,"roles":1953,"affiliations":1954,"properties":1961,"displayName":1963,"givenName":28,"familyName":28},"6e30b9d3-579f-4a60-b962-4507ae45a75b",[962],[1955],{"id":1918,"sortIndex":32,"affiliation":1956,"properties":28},{"id":1918,"createTime":28,"updateTime":28,"relativeEntities":1957,"slug":28,"properties":1958,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1960,"statistic":28},[],{"title":1959},{"VI":1923},[],{"title":1962},{"VI":1963},"Janette A Norman",{"url":1903,"publisher":1965,"properties":1984},{"id":868,"createTime":869,"updateTime":870,"relativeEntities":1966,"slug":872,"properties":1967,"entityType":25,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":32,"subjectFields":1970,"manageAffiliations":1971,"indexDatabases":1972,"url":28,"thumbnailPath":28,"statistic":1979,"gsStatistic":28,"type":28,"analyzePriority":28},[],{"title":1968,"eissn":1969},{"EN":875},{"VOID":877},[],[],[1973],{"id":883,"indexDatabase":1974,"url":889,"indexYears":890,"academicFieldIds":28,"indexDatabaseRanking":891},{"id":775,"createTime":28,"updateTime":28,"relativeEntities":1975,"label":1976,"description":1977,"key":781,"publicationTags":1978,"standard":28},[],{"EN":778,"VI":778},{"EN":778,"VI":780},[783],{"impactFactor":32,"impactFactorByYear":1980,"i10Index":903,"i10IndexLast5Year":140,"totalPublication":595,"totalPublicationByYear":1981,"totalCitation":905,"totalCitationByYear":1982,"totalCitationPerPublication":923,"totalCitationPerPublicationByYear":1983,"hindexLast5Year":688,"hindex":688},{"2012":894,"2013":895,"2014":896,"2015":593,"2016":897,"2017":898,"2018":899,"2019":900,"2020":901,"2021":902,"2022":42},{"2005":49,"2006":45,"2007":47,"2008":147,"2009":323,"2010":128,"2011":196,"2012":122,"2013":146,"2014":131,"2015":152,"2016":148,"2017":137,"2018":136,"2019":352,"2020":122},{"2005":907,"2006":908,"2007":909,"2008":910,"2009":911,"2010":912,"2011":913,"2012":914,"2013":915,"2014":916,"2015":917,"2016":918,"2017":919,"2018":920,"2019":921,"2020":922},{"2005":925,"2006":361,"2007":926,"2008":927,"2009":928,"2010":929,"2011":930,"2012":931,"2013":932,"2014":140,"2015":933,"2016":934,"2017":935,"2018":936,"2019":937,"2020":938},{"pages":1985,"volume":1987},{"VOID":1986},"1-18",{"VOID":1988},"8","2008-07-07",2008,[891],{"id":1993,"createTime":1994,"updateTime":1995,"relativeEntities":1996,"slug":1997,"properties":1998,"entityType":956,"verifyStatus":26,"verifyTime":1995,"verifyNote":1078,"languages":28,"translateLanguages":28,"viewCount":32,"primaryUrl":2007,"fullTextUrl":28,"authors":2008,"publicationType":1033,"publisherRelationship":2050,"citationCount":28,"citationInfo":28,"publishDate":2074,"publishYear":1366,"citationAnalyzeStatus":878,"lastCitationAnalyze":28,"indexDatabases":2075,"openAccess":28,"references":28,"isForceReanalyzing":1062},"007ba23f-2d6b-404c-b1cf-a3486f026e38","2024-02-18T21:09:20.345+00:00","2025-02-21T05:45:38.258+00:00",[],"Chloroplast-phylogenomic-analysis-resolves-deep-level-relationships-within-the-green-algal-class-Trebouxiophyceae",{"abstract":1999,"title":2001,"references":2003,"doi":2005},{"EN":2000},"The green algae represent one of the most successful groups of photosynthetic eukaryotes, but compared to their land plant relatives, surprisingly little is known about their evolutionary history. This is in great part due to the difficulty of recognizing species diversity behind morphologically similar organisms. The Trebouxiophyceae is a species-rich class of the Chlorophyta that includes symbionts (e.g. lichenized algae) as well as free-living green algae. Members of this group display remarkable ecological variation, occurring in aquatic, terrestrial and aeroterrestrial environments. Because a reliable backbone phylogeny is essential to understand the evolutionary history of the Trebouxiophyceae, we sought to identify the relationships among the major trebouxiophycean lineages that have been previously recognized in nuclear-encoded 18S rRNA phylogenies. To this end, we used a chloroplast phylogenomic approach. We determined the sequences of 29 chlorophyte chloroplast genomes and assembled amino acid and nucleotide data sets derived from 79 chloroplast genes of 61 chlorophytes, including 35 trebouxiophyceans. The amino acid- and nucleotide-based phylogenies inferred using maximum likelihood and Bayesian methods and various models of sequence evolution revealed essentially the same relationships for the trebouxiophyceans. Two major groups were identified: a strongly supported clade of 29 taxa (core trebouxiophyceans) that is sister to the Chlorophyceae + Ulvophyceae and a clade comprising the Chlorellales and Pedinophyceae that represents a basal divergence relative to the former group. The core trebouxiophyceans form a grade of strongly supported clades that include a novel lineage represented by the desert crust alga Pleurastrosarcina brevispinosa. The assemblage composed of the Oocystis and Geminella clades is the deepest divergence of the core trebouxiophyceans. Like most of the chlorellaleans, early-diverging core trebouxiophyceans are predominantly planktonic species, whereas core trebouxiophyceans occupying more derived lineages are mostly terrestrial or aeroterrestrial algae. Our phylogenomic study provides a solid foundation for addressing fundamental questions related to the biology and ecology of the Trebouxiophyceae. The inferred trees reveal that this class is not monophyletic; they offer new insights not only into the internal structure of the class but also into the lifestyle of its founding members and subsequent adaptations to changing environments.",{"EN":2002},"Chloroplast phylogenomic analysis resolves deep-level relationships within the green algal class Trebouxiophyceae",{"VOID":2004},"Leliaert F, Smith DR, Moreau H, Herron MD, Verbruggen H, Delwiche CF, De Clerck O: Phylogeny and molecular evolution of the green algae. CRC Crit Rev Plant Sci. 2012, 31: 1-46. 10.1080\u002F07352689.2011.615705.\nRuhfel BR, Gitzendanner MA, Soltis PS, Soltis DE, Burleigh JG: From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes. BMC Evol Biol. 2014, 14: 23-10.1186\u002F1471-2148-14-23.\nMattox KR, Stewart KD: Classification of the Green Algae: A Concept Based on Comparative Cytology. The Systematics of the Green Algae. Edited by: Irvine DEG, John DM. 1984, Academic Press, London, 29-72.\nO’Kelly CJ, Floyd GL: Flagellar apparatus absolute orientations and the phylogeny of the green algae. Biosystems. 1984, 16 (3–4): 227-251.\nLewis LA, McCourt RM: Green algae and the origin of land plants. Am J Bot. 2004, 91 (10): 1535-1556. 10.3732\u002Fajb.91.10.1535.\nPröschold T, Leliaert F: Systematics of the Green Algae: Conflict of Classic and Modern Approaches. In Unravelling the Algae.: CRC Press; 2007:123–153.\nFriedl T, Rybalka N: Systematics of the Green Algae: A Brief Introduction to the Current Status. Progress in Botany 73. Edited by: Luttge U, Beyschlag W, Budel B, Francis D. 2012, Springer-Verlag Berlin, Heidelberger Platz 3, D-14197 Berlin, Germany, 259-280. 10.1007\u002F978-3-642-22746-2_10.\nViprey M, Guillou L, Ferreol M, Vaulot D: Wide genetic diversity of picoplanktonic green algae (Chloroplastida) in the Mediterranean Sea uncovered by a phylum-biased PCR approach. Environ Microbiol. 2008, 10 (7): 1804-1822. 10.1111\u002Fj.1462-2920.2008.01602.x.\nHuss VAR, Frank C, Hartmann EC, Hirmer M, Kloboucek A, Seidel BM, Wenzeler P, Kessler E: Biochemical taxonomy and molecular phylogeny of the genus Chlorella sensu lato (Chlorophyta). J Phycol. 1999, 35 (3): 587-598. 10.1046\u002Fj.1529-8817.1999.3530587.x.\nLuo W, Pröschold T, Bock C, Krienitz L: Generic concept in Chlorella-related coccoid green algae (Chlorophyta, Trebouxiophyceae). Plant Biology (Stuttgart). 2010, 12 (3): 545-553. 10.1111\u002Fj.1438-8677.2009.00221.x.\nPhilippe H, Telford MJ: Large-scale sequencing and the new animal phylogeny. Trends Ecol Evol. 2006, 21 (11): 614-620. 10.1016\u002Fj.tree.2006.08.004.\nLemieux C, Otis C, Turmel M: Six newly sequenced chloroplast genomes from prasinophyte green algae provide insights into the relationships among prasinophyte lineages and the diversity of streamlined genome architecture in picoplanktonic species.BMC Genomics 2014, Accepted for publication on 25 September 2014.,\nTurmel M, Gagnon MC, O’4Kelly CJ, Otis C, Lemieux C: The chloroplast genomes of the green algae Pyramimonas, Monomastix, and Pycnococcus shed new light on the evolutionary history of prasinophytes and the origin of the secondary chloroplasts of euglenids. Mol Biol Evol. 2009, 26 (3): 631-648. 10.1093\u002Fmolbev\u002Fmsn285.\nCivan P, Foster PG, Embley MT, Seneca A, Cox CJ: Analyses of charophyte chloroplast genomes help characterize the ancestral chloroplast genome of land plants. Genome Biol Evol. 2014, 6 (4): 897-911. 10.1093\u002Fgbe\u002Fevu061.\nLemieux C, Otis C, Turmel M: A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies. BMC Biol. 2007, 5: 2-10.1186\u002F1741-7007-5-2.\nTurmel M, Otis C, Lemieux C: The chloroplast genome sequence of Chara vulgaris sheds new light into the closest green algal relatives of land plants. Mol Biol Evol. 2006, 23 (6): 1324-1338. 10.1093\u002Fmolbev\u002Fmsk018.\nTurmel M, Pombert JF, Charlebois P, Otis C, Lemieux C: The green algal ancestry of land plants as revealed by the chloroplast genome. Int J Plant Sci. 2007, 168 (5): 679-689. 10.1086\u002F513470.\nZhong B, Xi Z, Goremykin VV, Fong R, McLenachan PA, Novis PM, Davis CC, Penny D: Streptophyte algae and the origin of land plants revisited using heterogeneous models with three new algal chloroplast genomes. Mol Biol Evol. 2014, 31 (1): 177-183. 10.1093\u002Fmolbev\u002Fmst200.\nBrouard JS, Otis C, Lemieux C, Turmel M: The exceptionally large chloroplast genome of the green alga Floydiella terrestris illuminates the evolutionary history of the Chlorophyceae. Genome Biol Evol. 2010, 2: 240-256. 10.1093\u002Fgbe\u002Fevq014.\nTurmel M, Brouard JS, Gagnon C, Otis C, Lemieux C: Deep division in the Chlorophyceae (Chlorophyta) revealed by chloroplast phylogenomic analyses. J Phycol. 2008, 44 (3): 739-750. 10.1111\u002Fj.1529-8817.2008.00510.x.\nCocquyt E, Verbruggen H, Leliaert F, De Clerck O: Evolution and cytological diversification of the green seaweeds (Ulvophyceae). Mol Biol Evol. 2010, 27 (9): 2052-2061. 10.1093\u002Fmolbev\u002Fmsq091.\nFučíková K, Lewis PO, Lewis LA: Putting incertae sedis taxa in their place: a proposal for ten new families and three new genera in Sphaeropleales (Chlorophyceae, Chlorophyta). J Phycol. 2014, 50 (1): 14-25. 10.1111\u002Fjpy.12118.\nFriedl T: Inferring taxonomic positions and testing genus level assignments in coccoid green lichen algae: a phylogenetic analysis of 18S ribosomal RNA sequences from Dictyochloropsis reticulata and from members of the genus Myrmecia (Chlorophyta, Trebouxiophyceae cl. nov.). J Phycol. 1995, 31 (4): 632-639. 10.1111\u002Fj.1529-8817.1995.tb02559.x.\nFriedl T, Büdel B: Photobionts. Lichen Biology. Edited by: Nash TI. 2008, Cambridge University Press, Cambridge, 9-26. 10.1017\u002FCBO9780511790478.003. 2\nPérez-Ortega S, Ríos A, Crespo A, Sancho LG: Symbiotic lifestyle and phylogenetic relationships of the bionts of Mastodia tessellata (Ascomycota, incertae sedis). Am J Bot. 2010, 97 (5): 738-752. 10.3732\u002Fajb.0900323.\nPröschold T, Darienko T, Silva PC, Reisser W, Krienitz L: The systematics of Zoochlorella revisited employing an integrative approach. Environ Microbiol. 2011, 13 (2): 350-364. 10.1111\u002Fj.1462-2920.2010.02333.x.\nde Koning AP, Keeling PJ: The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured. BMC Biol. 2006, 4: 12-10.1186\u002F1741-7007-4-12.\nPombert JF, Blouin NA, Lane C, Boucias D, Keeling PJ: A lack of parasitic reduction in the obligate parasitic green alga Helicosporidium. PLoS Genet. 2014, 10 (5): e1004355-10.1371\u002Fjournal.pgen.1004355.\nUeno R, Urano N, Suzuki M: Phylogeny of the non-photosynthetic green micro-algal genus Prototheca (Trebouxiophyceae, Chlorophyta) and related taxa inferred from SSU and LSU ribosomal DNA partial sequence data. FEMS Microbiol Lett. 2003, 223 (2): 275-280. 10.1016\u002FS0378-1097(03)00394-X.\nHannon M, Gimpel J, Tran M, Rasala B, Mayfield S: Biofuels from algae: challenges and potential. Biofuels. 2010, 1 (5): 763-784. 10.4155\u002Fbfs.10.44.\nMata TM, Martins AA, Caetano NS: Microalgae for biodiesel production and other applications: A review. Renew Sust Energ Rev. 2010, 14 (1): 217-232. 10.1016\u002Fj.rser.2009.07.020.\nBock C, Luo W, Kusber W-H, Hegewald E, Pazoutova M, Krienitz L: Classification of crucigenoid algae: Phylogenetic position of the reinstated genus Lemmermannia, Tetrastrum spp. Crucigenia tetrapedia, and C. lauterbornii (Trebouxiophyceae, Chlorophyta). J Phycol. 2013, 49 (2): 329-339. 10.1111\u002Fjpy.12039.\nDarienko T, Gustavs L, Mudimu O, Menendez CR, Schumann R, Karsten U, Friedl T, Proeschold T: Chloroidium, a common terrestrial coccoid green alga previously assigned to Chlorella (Trebouxiophyceae, Chlorophyta). Eur J Phycol. 2010, 45 (1): 79-95. 10.1080\u002F09670260903362820.\nElias M, Neustupa J, Skaloud P: Elliptochloris bilobata var. corticola var. nov (Trebouxiophyceae, Chlorophyta), a novel subaerial coccal green alga. Biologia (Bratislava). 2008, 63 (6): 791-798. 10.2478\u002Fs11756-008-0100-5.\nKarsten U, Friedl T, Schumann R, Hoyer K, Lembcke S: Mycosporine-like amino acids and phylogenies in green algae: Prasiola and its relatives from the Trebouxiophyceae (Chlorophyta). J Phycol. 2005, 41 (3): 557-566. 10.1111\u002Fj.1529-8817.2005.00081.x.\nKrienitz L, Bock C, Luo W, Pröschold T: Polyphyletic origin of the Dictyosphaerium morphotype within Chlorellaceae (Trebouxiophyceae). J Phycol. 2010, 46 (3): 559-563. 10.1111\u002Fj.1529-8817.2010.00813.x.\nNeustupa J, Elias M, Skaloud P, Nemcova Y, Sejnohova L: Xylochloris irregularis gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel subaerial coccoid green alga. Phycologia. 2011, 50 (1): 57-66. 10.2216\u002F08-64.1.\nNeustupa J, Nemcova Y, Vesela J, Steinova J, Skaloud P: Leptochlorella corticola gen. et sp. nov. and Kalinella apyrenoidosa sp. nov.: two novel Chlorella-like green microalgae (Trebouxiophyceae, Chlorophyta) from subaerial habitats. Int J Syst Evol Microbiol. 2013, 63 (Part 1): 377-387. 10.1099\u002Fijs.0.047944-0.\nSluiman HJ, Guihal C, Mudimu O: Assessing phylogenetic affinities and species delimitations in Klebsormidiales (Streptophyta): Nuclear-encoded rDNA phylogenies and its secondary structure models in Klebsormidium, Hormidiella, and Entransia. J Phycol. 2008, 44 (1): 183-195. 10.1111\u002Fj.1529-8817.2007.00442.x.\nKrienitz L, Bock C: Present state of the systematics of planktonic coccoid green algae of inland waters. Hydrobiologia. 2012, 698 (1): 295-326. 10.1007\u002Fs10750-012-1079-z.\nPröschold T, Bock C, Luo W, Krienitz L: Polyphyletic distribution of bristle formation in Chlorellaceae: Micractinium, Diacanthos, Didymogenes and Hegewaldia gen. nov. (Trebouxiophyceae, Chlorophyta). Phycol Res. 2010, 58 (1): 1-8. 10.1111\u002Fj.1440-1835.2009.00552.x.\nTurmel M, Otis C, Lemieux C: The chloroplast genomes of the green algae Pedinomonas minor, Parachlorella kessleri, and Oocystis solitaria reveal a shared ancestry between the Pedinomonadales and Chlorellales. Mol Biol Evol. 2009, 26 (10): 2317-2331. 10.1093\u002Fmolbev\u002Fmsp138.\nCulture Collection of Algae at the University of Goettingen.., [http:\u002F\u002Fwww.uni-goettingen.de\u002Fen\u002F45175.html]\nThe Culture Collection of Algae at The University of Texas at Austin.., [http:\u002F\u002Fweb.biosci.utexas.edu\u002Futex\u002Fdefault.aspx]\nProvasoli-Guillard National Center for Marine Algae and Microbiota.., [https:\u002F\u002Fncma.bigelow.org]\nMicrobial Culture Collection at the National Institute of Environmental Studies.., [http:\u002F\u002Fmcc.nies.go.jp]\nCulture Collection of Algae of Charles University in Prague.., [http:\u002F\u002Fbotany.natur.cuni.cz\u002Falgo\u002Fcaup-list.html]\nSluiman HJ, Blommers PCJ: Ultrastructure and taxonomic position of Chlorosarcina stigmatica Deason (Chlorophyceae, Chlorophyta). Arch Protistenkdr. 1990, 138 (3): 181-190. 10.1016\u002FS0003-9365(11)80160-0.\nCox CJ, Li B, Foster PG, Embley TM, Civan P: Conflicting phylogenies for early land plants are caused by composition biases among synonymous substitutions. Syst Biol. 2014, 63 (2): 272-279. 10.1093\u002Fsysbio\u002Fsyt109.\nLi B, Lopes JS, Foster PG, Embley TM, Cox CJ: Compositional biases among synonymous substitutions cause conflict between gene and protein trees for plastid origins. Mol Biol Evol. 2014, 31 (7): 1697-1709. 10.1093\u002Fmolbev\u002Fmsu105.\nRota-Stabelli O, Lartillot N, Philippe H, Pisani D: Serine codon-usage bias in deep phylogenomics: pancrustacean relationships as a case study. Syst Biol. 2013, 62 (1): 121-133. 10.1093\u002Fsysbio\u002Fsys077.\nBlanquart S, Lartillot N: A site- and time-heterogeneous model of amino acid replacement. Mol Biol Evol. 2008, 25 (5): 842-858. 10.1093\u002Fmolbev\u002Fmsn018.\nFoster PG, Hickey DA: Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions. J Mol Evol. 1999, 48 (3): 284-290. 10.1007\u002FPL00006471.\nCox CJ, Foster PG: A 20-state empirical amino-acid substitution model for green plant chloroplasts. Mol Phylogenet Evol. 2013, 68 (2): 218-220. 10.1016\u002Fj.ympev.2013.03.030.\nLe SQ, Dang CC, Gascuel O: Modeling protein evolution with several amino acid replacement matrices depending on site rates. Mol Biol Evol. 2012, 29 (10): 2921-2936. 10.1093\u002Fmolbev\u002Fmss112.\nLartillot N, Brinkmann H, Philippe H: Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model. BMC Evol Biol. 2007, 7 (Suppl 1): S4-10.1186\u002F1471-2148-7-S1-S4.\nLartillot N, Philippe H: A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol Biol Evol. 2004, 21 (6): 1095-1109. 10.1093\u002Fmolbev\u002Fmsh112.\nPhilippe H, Brinkmann H, Copley RR, Moroz LL, Nakano H, Poustka AJ, Wallberg A, Peterson KJ, Telford MJ: Acoelomorph flatworms are deuterostomes related to Xenoturbella. Nature. 2011, 470 (7333): 255-260. 10.1038\u002Fnature09676.\nPhilippe H, Brinkmann H, Lavrov DV, Littlewood DTJ, Manuel M, Worheide G, Baurain D: Resolving difficult phylogenetic questions: why more sequences are not enough. PLoS Biol. 2011, 9 (3): e1000602-10.1371\u002Fjournal.pbio.1000602.\nShimodaira H: An approximately unbiased test of phylogenetic tree selection. Syst Biol. 2002, 51 (3): 492-508. 10.1080\u002F10635150290069913.\nShimodaira H, Hasegawa M: CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics. 2001, 17 (12): 1246-1247. 10.1093\u002Fbioinformatics\u002F17.12.1246.\nRegier JC, Shultz JW, Zwick A, Hussey A, Ball B, Wetzer R, Martin JW, Cunningham CW: Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences. Nature. 2010, 463 (7284): 1079-1083. 10.1038\u002Fnature08742.\nLu F, Xu W, Tian C, Wang G, Niu J, Pan G, Hu S: The Bryopsis hypnoides plastid genome: multimeric forms and complete nucleotide sequence. PLoS One. 2011, 6 (2): e14663-10.1371\u002Fjournal.pone.0014663.\nNovis PM, Smissen R, Buckley TR, Gopalakrishnan K, Visnovsky G: Inclusion of chloroplast genes that have undergone expansion misleads phylogenetic reconstruction in the Chlorophyta. Am J Bot. 2013, 100 (11): 2194-2209. 10.3732\u002Fajb.1200584.\nŠkaloud P, Kalina T, Nemjová K, De Clerck O, Leliaert L: Morphology and phylogenetic position of the freshwater green microalgae Chlorochytrium (Chlorophyceae) and Scotinosphaera (Scotinosphaerales, ord. nov., Ulvophyceae). J Phycol. 2013, 49 (1): 115-129. 10.1111\u002Fjpy.12021.\nSmith DR, Burki F, Yamada T, Grimwood J, Grigoriev IV, Van Etten JL, Keeling PJ: The GC-rich mitochondrial and plastid genomes of the green alga Coccomyxa give insight into the evolution of organelle DNA nucleotide landscape. PLoS One. 2011, 6 (8): e23624-10.1371\u002Fjournal.pone.0023624.\nZuccarello GC, Price N, Verbruggen H, Leliaert F: Analysis of a plastid multigene data set and the phylogenetic position of the marine macroalga Caulerpa filiformis (Chlorophyta). J Phycol. 2009, 45 (5): 1206-1212. 10.1111\u002Fj.1529-8817.2009.00731.x.\nHolzinger A, Karsten U: Desiccation stress and tolerance in green algae: consequences for ultrastructure, physiological and molecular mechanisms. Front Plant Sci. 2013, 4: 327-10.3389\u002Ffpls.2013.00327.\nMoniz MBJ, Rindi F, Novis PM, Broady PA, Guiry MD: Molecular phylogeny of Antarctic Prasiola (Prasiolales, Trebouxiophyceae) reveals extensive cryptic diversity. J Phycol. 2012, 48 (4): 940-955. 10.1111\u002Fj.1529-8817.2012.01172.x.\nGaysina L, Nemcova Y, Skaloud P, Sevcikova T, Elias M: Chloropyrula uraliensis gen. et sp nov (Trebouxiophyceae, Chlorophyta), a new green coccoid alga with a unique ultrastructure, isolated from soil in South Urals. J Syst Evol. 2013, 51 (4): 476-484. 10.1111\u002Fjse.12014.\nFučíková K Lewis PO, Lewis LA: Widespread desert affiliation of trebouxiophycean algae (Trebouxiophyceae, Chlorophyta) including discovery of three new desert genera.Phycol Res 2014, article published online on 27 August 2014 (DOI: 10.1111\u002Fpre.12062).,\nKrienitz L, Bock C, Nozaki H, Wolf M: SSU rRNA gene phylogeny of morphospecies affiliated to the bioassay alga “Selenastrum capricornutum” recovered the polyphyletic origin of crescent-shaped Chlorophyta. J Phycol. 2011, 47 (4): 880-893. 10.1111\u002Fj.1529-8817.2011.01010.x.\nNeustupa J, Nemcova Y, Elias M, Skaloud P: Kalinella bambusicola gen. et sp nov (Trebouxiophyceae, Chlorophyta), a novel coccoid Chlorella-like subaerial alga from Southeast Asia. Phycol Res. 2009, 57 (3): 159-169. 10.1111\u002Fj.1440-1835.2009.00534.x.\nSomogyi B, Felföldi T, Solymosi K, Makk J, Homonnay ZG, Horváth G, Turcsi E, Bödi B, Márialigeti K, Vörös L: Chloroparva pannonica gen. et sp. nov. (Trebouxiophyceae, Chlorophyta) - a new picoplanktonic green alga from a turbid, shallow soda pan. Phycologia. 2011, 50 (1): 1-10. 10.2216\u002F10-08.1.\nSomogyi B, Felföldi T, Solymosi K, Flieger K, Márialigeti K, Bödi B, Vörös L: One step closer to eliminating the nomenclatural problems of minute coccoid green algae: Pseudochloris wilhelmii, gen. et sp. nov. (Trebouxiophyceae, Chlorophyta). Eur J Phycol. 2013, 48 (4): 427-436. 10.1080\u002F09670262.2013.854411.\nMarin B: Nested in the Chlorellales or independent class? Phylogeny and classification of the Pedinophyceae (Viridiplantae) revealed by molecular phylogenetic analyses of complete nuclear and plastid-encoded rRNA operons. Protist. 2012, 163 (5): 778-805. 10.1016\u002Fj.protis.2011.11.004.\nKeller MD, Seluin RC, Claus W, Guillard RRL: Media for the culture of oceanic ultraphytoplankton. J Phycol. 1987, 23: 633-638. 10.1111\u002Fj.1529-8817.1987.tb04217.x.\nAndersen RA: Algal Culturing Techniques. 2005, Elsevier\u002FAcademic Press, Boston, Mass\nTurmel M, Otis C, Lemieux C: Tracing the evolution of streptophyte algae and their mitochondrial genome. Genome Biol Evol. 2013, 5 (10): 1817-1835. 10.1093\u002Fgbe\u002Fevt135.\nPlateforme d’Analyses Génomiques de l’Université Laval.., [http:\u002F\u002Fpag.ibis.ulaval.ca\u002Fseq\u002Fen\u002Findex.php]\nMargulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen ZT, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer MLI, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, et al: Genome sequencing in microfabricated high-density picolitre reactors. Nature. 2005, 437 (7057): 376-380.\nGordon D, Abajian C, Green P: Consed: a graphical tool for sequence finishing. Genome Res. 1998, 8: 195-202. 10.1101\u002Fgr.8.3.195.\nInnovation Centre of McGill University and Genome Quebec.., [http:\u002F\u002Fwww.gqinnovationcenter.com\u002Findex.aspx]\nBoisvert S, Laviolette F, Corbeil J: Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies. J Comput Biol. 2010, 17 (11): 1519-1533. 10.1089\u002Fcmb.2009.0238.\nPombert JF, Otis C, Lemieux C, Turmel M: The chloroplast genome sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) reveals unusual structural features and new insights into the branching order of chlorophyte lineages. Mol Biol Evol. 2005, 22 (9): 1903-1918. 10.1093\u002Fmolbev\u002Fmsi182.\nLagesen K, Hallin P, Rodland EA, Staerfeldt HH, Rognes T, Ussery DW: RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 2007, 35 (9): 3100-3108. 10.1093\u002Fnar\u002Fgkm160.\nLowe TM, Eddy SR: tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997, 25 (5): 955-964. 10.1093\u002Fnar\u002F25.5.0955.\nMichel F, Umesono K, Ozeki H: Comparative and functional anatomy of group II catalytic introns - a review. Gene. 1989, 82 (1): 5-30. 10.1016\u002F0378-1119(89)90026-7.\nMichel F, Westhof E: Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J Mol Biol. 1990, 216: 585-610. 10.1016\u002F0022-2836(90)90386-Z.\nEdgar RC: MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32 (5): 1792-1797. 10.1093\u002Fnar\u002Fgkh340.\nCapella-Gutierrez S, Silla-Martinez JM, Gabaldon T: trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics. 2009, 25 (15): 1972-1973. 10.1093\u002Fbioinformatics\u002Fbtp348.\nSmith SA, Dunn CW: Phyutility: a phyloinformatics tool for trees, alignments and molecular data. Bioinformatics. 2008, 24 (5): 715-716. 10.1093\u002Fbioinformatics\u002Fbtm619.\nStamatakis A: RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 2014, 30 (9): 1312-1313. 10.1093\u002Fbioinformatics\u002Fbtu033.\nLartillot N, Lepage T, Blanquart S: PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics. 2009, 25 (17): 2286-2288. 10.1093\u002Fbioinformatics\u002Fbtp368.\nRice P, Longden I, Bleasby A: EMBOSS: The European molecular biology open software suite. Trends Genet. 2000, 16 (6): 276-277. 10.1016\u002FS0168-9525(00)02024-2.\nNenadic O, Greenacre M: Correspondence analysis in R, with two- and three-dimensional graphics: The ca package. J Stat Software. 2007, 20 (3): 1-13.\nCastresana J: Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, 17 (4): 540-552. 10.1093\u002Foxfordjournals.molbev.a026334.\nMaddison WP, Maddison DR: Mesquite: A Modular System for Evolutionary Analysis. Version 2.75. In 2011. ., [http:\u002F\u002Fmesquiteproject.org]\nLemieux C, Otis C, Turmel M: Data from: Chloroplast Phylogenomic Analysis Resolves Deep-Level Relationships Within the Green Algal Class Trebouxiophyceae. In ., [http:\u002F\u002Fdx.doi.org\u002F10.5061\u002Fdryad.q4432]",{"VOID":2006},"10.1186\u002Fs12862-014-0211-2","https:\u002F\u002Fbmcecolevol.biomedcentral.com\u002Farticles\u002F10.1186\u002Fs12862-014-0211-2",[2009,2024,2037],{"id":2010,"sortIndex":32,"researcher":28,"roles":2011,"affiliations":2012,"properties":2021,"displayName":2023,"givenName":28,"familyName":28},"d7881d79-9cc1-4045-9a5a-dd4de29365e9",[962],[2013],{"id":2014,"sortIndex":32,"affiliation":2015,"properties":28},"c0fda697-0787-4d6e-ab2a-c3a0dbf591a8",{"id":2014,"createTime":28,"updateTime":28,"relativeEntities":2016,"slug":28,"properties":2017,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":2020,"statistic":28},[],{"title":2018},{"VI":2019},"Département de Biochimie, de Microbiologie et de Bio-informatique, Institut de Biologie Intégrative et des Systèmes, Université Laval, Québec, Canada",[],{"title":2022},{"VI":2023},"Claude Lemieux",{"id":2025,"sortIndex":40,"researcher":28,"roles":2026,"affiliations":2027,"properties":2034,"displayName":2036,"givenName":28,"familyName":28},"2402190a-c52a-4e83-8de3-937dc8a5d4f5",[962],[2028],{"id":2014,"sortIndex":32,"affiliation":2029,"properties":28},{"id":2014,"createTime":28,"updateTime":28,"relativeEntities":2030,"slug":28,"properties":2031,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":2033,"statistic":28},[],{"title":2032},{"VI":2019},[],{"title":2035},{"VI":2036},"Christian Otis",{"id":2038,"sortIndex":123,"researcher":28,"roles":2039,"affiliations":2040,"properties":2047,"displayName":2049,"givenName":28,"familyName":28},"4834b148-0950-46e5-ab46-ea3434a89b99",[962],[2041],{"id":2014,"sortIndex":32,"affiliation":2042,"properties":28},{"id":2014,"createTime":28,"updateTime":28,"relativeEntities":2043,"slug":28,"properties":2044,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":2046,"statistic":28},[],{"title":2045},{"VI":2019},[],{"title":2048},{"VI":2049},"Monique Turmel",{"url":2007,"publisher":2051,"properties":2070},{"id":868,"createTime":869,"updateTime":870,"relativeEntities":2052,"slug":872,"properties":2053,"entityType":25,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":32,"subjectFields":2056,"manageAffiliations":2057,"indexDatabases":2058,"url":28,"thumbnailPath":28,"statistic":2065,"gsStatistic":28,"type":28,"analyzePriority":28},[],{"title":2054,"eissn":2055},{"EN":875},{"VOID":877},[],[],[2059],{"id":883,"indexDatabase":2060,"url":889,"indexYears":890,"academicFieldIds":28,"indexDatabaseRanking":891},{"id":775,"createTime":28,"updateTime":28,"relativeEntities":2061,"label":2062,"description":2063,"key":781,"publicationTags":2064,"standard":28},[],{"EN":778,"VI":778},{"EN":778,"VI":780},[783],{"impactFactor":32,"impactFactorByYear":2066,"i10Index":903,"i10IndexLast5Year":140,"totalPublication":595,"totalPublicationByYear":2067,"totalCitation":905,"totalCitationByYear":2068,"totalCitationPerPublication":923,"totalCitationPerPublicationByYear":2069,"hindexLast5Year":688,"hindex":688},{"2012":894,"2013":895,"2014":896,"2015":593,"2016":897,"2017":898,"2018":899,"2019":900,"2020":901,"2021":902,"2022":42},{"2005":49,"2006":45,"2007":47,"2008":147,"2009":323,"2010":128,"2011":196,"2012":122,"2013":146,"2014":131,"2015":152,"2016":148,"2017":137,"2018":136,"2019":352,"2020":122},{"2005":907,"2006":908,"2007":909,"2008":910,"2009":911,"2010":912,"2011":913,"2012":914,"2013":915,"2014":916,"2015":917,"2016":918,"2017":919,"2018":920,"2019":921,"2020":922},{"2005":925,"2006":361,"2007":926,"2008":927,"2009":928,"2010":929,"2011":930,"2012":931,"2013":932,"2014":140,"2015":933,"2016":934,"2017":935,"2018":936,"2019":937,"2020":938},{"pages":2071,"volume":2073},{"VOID":2072},"1-15",{"VOID":1364},"2014-10-01",[891],{"id":2077,"createTime":2078,"updateTime":2079,"relativeEntities":2080,"slug":2081,"properties":2082,"entityType":956,"verifyStatus":26,"verifyTime":2079,"verifyNote":1078,"languages":28,"translateLanguages":28,"viewCount":32,"primaryUrl":2091,"fullTextUrl":28,"authors":2092,"publicationType":1033,"publisherRelationship":2132,"citationCount":28,"citationInfo":28,"publishDate":2155,"publishYear":1738,"citationAnalyzeStatus":878,"lastCitationAnalyze":28,"indexDatabases":2156,"openAccess":28,"references":28,"isForceReanalyzing":1062},"00bcb0d6-b6ad-4e8c-9760-1e860da70741","2023-12-06T02:03:44.836+00:00","2025-01-08T01:45:00.865+00:00",[],"Molecular-evolution-of-mammalian-genes-with-epistatic-interactions-in-fertilization",{"abstract":2083,"title":2085,"references":2087,"doi":2089},{"EN":2084},"Genes that encode proteins associated with sperm competition, fertilization, and sexual conflicts of interest are often among the most rapidly evolving parts of animal genomes. One family of sperm-expressed genes (Zp3r, C4bpa) in the mammalian gene cluster called the regulator of complement activation (RCA) encodes proteins that bind eggs and mediate reproductive success, and are therefore expected to show high relative rates of nonsynonymous nucleotide substitution in response to sexual selection in comparison to other genes not involved in gamete binding at fertilization. We tested that working hypothesis by using phylogenetic models of codon evolution to identify episodes of diversifying positive selection. We used a comparative approach to quantify the evidence for episodic diversifying selection acting on RCA genes with known functions in fertilization (and sensitivity to sexual selection), and contrast them with other RCA genes in the same gene family that function in innate immunity (and are not sensitive to sexual selection). We expected but did not find evidence for more episodes of positive selection on Zp3r in Glires (the rodents and lagomorphs) or on C4BPA in Primates, in comparison to other paralogous RCA genes in the same taxon, or in comparison to the same orthologous RCA gene in the other taxon. That result was not unique to RCA genes: we also found little evidence for more episodes of diversifying selection on genes that encode selective sperm-binding molecules in the egg coat or zona pellucida (Zp2, Zp3) in comparison to members of the same gene family that encode structural elements of the egg coat (Zp1, Zp4). Similarly, we found little evidence for episodic diversifying selection acting on two other recently discovered genes (Juno, Izumo1) that encode essential molecules for sperm–egg fusion. These negative results help to illustrate the importance of a comparative context for this type of codon model analysis. The results may also point to other phylogenetic contexts in which the effects of selection acting on these fertilization proteins might be more readily discovered and documented in mammals and other taxa.",{"EN":2086},"Molecular evolution of mammalian genes with epistatic interactions in fertilization",{"VOID":2088},"Almeida FC, DeSalle R. Genetic differentiation and adaptive evolution at reproductive loci in incipient Drosophila species. J Evol Biol. 2017;30:524–37.\nAmaral AR, Möller LM, Beheregaray LB, Coelho MM. Evolution of 2 reproductive proteins, ZP3 and PKDREJ, in cetaceans. J Hered. 2011;102:275–82.\nAndres JA, Maroja LS, Bogdanowicz SM, Swanson WJ, Harrison RG. Molecular evolution of seminal proteins in field crickets. Mol Biol Evol. 2006;23:1574–84.\nAnvisimova M, Liberles DA. Detecting and understanding natural selection. In: Cannarozzi GM, Schneider A, editors. Codon Evolution. London: Oxford University Press; 2012. p. 73–96.\nArenas M. Trends in substitution models of molecular evolution. Frontiers Genet. 2015;7:319.\nAvella MA, Xiong B, Dean J. The molecular basis of gamete recognition in mice and humans. Mol Human Reprod. 2013;19:279–89.\nBaibakov B, Boggs NA, Yauger B, Baibakov G, Dean J. Human sperm bind to the N-terminal domain of ZP2 in humanized zonae pellucidae in transgenic mice. J Cell Biol. 2012;197:897–905.\nBarrett RDH, Hoekstra HE. Molecular spandrels: tests of adaptation at the genetic level. Nat Rev Genet. 2011;12:767–80.\nBuffone MG, Kim KS, Doak BJ, Rodriguez-Miranda E, Gerton GL. Functional consequences of cleavage, dissociation and exocytotic release of ZP3R, a C4BP-related protein, from the mouse sperm acrosomal matrix. J Cell Sci. 2009;122:3153–60.\nBuffone MG, Zhuang T, Ord TS, Hui L, Moss SB, Gerton GL. Recombinant mouse sperm ZP3-binding protein (ZP3R\u002Fsp56) forms a high order oligomer that binds eggs and ihibits mouse fertilization in vitro. J Biol Chem. 2008;283:12438–45.\nCagliani R, Forni D, Filippi G, Mozzi A, de Gioia L, Pontremoli C, Pozzoli U, Bresolin R, Clerici M, Sironi M. The mammalian complement system as an epitome of host–pathogen genetic conflicts. Mol Ecol. 2016;25:1324–39.\nCapella-Gutierrez S, Silla-Martinez JM, Gabaladon T. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics. 2009;25:1972–3.\nChen S, Costa V, Beja-Pereira A. Evolutionary patterns of two major reproduction candidate genes (Zp2 and Zp3) reveal no contribution to reproductive isolation between bovine species. BMC Evol Biol. 2011;11:24.\nClark GF. The role of carbohydrate recognition during human sperm–egg binding. Hum Reprod. 2013;28:566–77.\nDarie CC, Janssen WG, Litscher ES, Wassarman PM. Purified trout egg vitelline envelope proteins VE and VE polymerize into homomeric fibrils from dimers in vitro. Biochim et Biophy Acta. 2008;1784:385–92.\nFabre P-H, Hautier L, Dimitrov D, Douzery EJP. A glimpse on the pattern of rodent diversification: a phylogenetic approach. BMC Evol Biol. 2012;12:88.\nForstmeier W, Wagenmakers E-J, Parker TH. Detecting and avoiding likely false-positive findings – a practical guide. Biol Rev. 2017;92:1941–68.\nFriedman R, Hughes AL. Likelihood-ratio tests for positive selection of human and mouse duplicate genes reveal nonconservative and anomalous properties of widely used methods. Mol Phylogen Evol. 2007;42:388–93.\nGavrilets S. Rapid evolution of reproductive barriers driven by sexual conflict. Nature. 2000;403:886–9.\nGelman A, Loken E. The statistical crisis in science. Am Sci. 2014;102:460–5.\nGoudet G, Mugnier S, Callebaut I, Monget P. Phylogenetic analysis and identification of pseudogenes reveal a progressive loss of zona pellucida genes during evolution of vertebrates. Biol Reprod. 2008;78:796–806.\nGrayson P. Izumo1 and Juno: the evolutionary origins and coevolution of essential sperm–egg binding partners. R Soc Open Sci. 2015;2:150296.\nHan L, Monné M, Okumura H, Schwend T, Cherry AL, Flot D, Matsuda T, Jovine L. Insights into egg coat assembly and egg–sperm interaction from the X-ray structure of full-length ZP3. Cell. 2010;143:404–15.\nHart MW, Stover DA, Guerra V, Mozaffari SV, Ober C, Mugal CF, Kaj I. Positive selection on human gamete-recognition genes. PeerJ. 2018;6:e4259.\nHart MW, Sunday JM, Popovic I, Learning KJ, Konrad CM. Incipient speciation of sea star populations by adaptive gamete recognition coevolution. Evolution. 2014;68:1294–305.\nHirohashi N, Kamei N, Kubo H, Sawada H, Matsumoto M, Hoshi M. Egg and sperm recognition systems during fertilization. Devel Growth Differ. 2008;50:S221–38.\nHofmeyer T, Schmelz S, Degiacomi MT, Dal Peraro M, Daneschdar M, Scrima A, van den Heuvel J, Heinz DW, Kolmar H. Arranged sevenfold: structural insights into the C-terminal oligomerization domain of human C4b-binding protein. J Mol Biol. 2012;425:1302–17.\nHourcade D, Holers VM, Atkinson JP. The regulators of complement activation (RCA) gene cluster. Adv Immunol. 1989;46:381–416.\nHuelsenbeck JP, Ronquist F. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics. 2001;17:754–5.\nHughes AL. Looking for Darwin in all the wrong places: the misguided quest for positive selection at the nucleotide sequence level. Heredity. 2007;99:364–73.\nJordan G, Goldman N. The effects of alignment error and alignment filtering on the sitewise detection of positive selection. Mol Biol Evol. 2012;29:1125–39.\nKappeler PM. Patterns of sexual dimorphism in body weight among prosimian primates. Fol Primatol. 1991;57:132–46.\nKeane TM, Creevey CJ, Pentony MM, Naughton TJ, McInerney JO. Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evol Biol. 2006;6:29.\nKober KM, Pogson GH. Genome-wide signals of positive selection in strongylocentrotid sea urchins. BMC Genomics. 2017;18:555.\nKrushkal J, Bat O, Gigli I. Evolutionary relationships among proteins encoded by the regulator of complement activation gene cluster. Mol Biol Evol. 2000;17:1718–30.\nLeigh SR, Shea BT. Ontogeny and the evolution of adult body size dimorphism in apes. Am J Primatol. 1995;36:37–60.\nLiang LF, Dean J. Conservation of mammalian secondary sperm receptor genes enables the promoter of the human gene to function in mouse oocytes. Devel Biol. 1993;156:399–408.\nLitscher ES, Williams Z, Wassarman PM. Zona pellucida glycoprotein ZP3 and fertilization in mammals. Mol Reprod Devel. 2009;76:933–41.\nLouros NN, Chrysina ED, Baltatzis GE, Patsouris ES, Homodrakas SJ, Iconomidou VA. A common ‘aggregation-prone’ interface possibly participates in the self-assembly of human zona pellucida proteins. FEBS Lett. 2016;590:619–30.\nMarkova-Raina P, Petrov D. High sensitivity to aligner and high rates of false positives in the estimates of positive selection in the 12 Drosophila genomes. Genome Res. 2011;21:863–74.\nMeslin C, Mugnier S, Callebaut I, Laurin M, Pascal G, Poupon A, Goudet G, Monget P. Evolution of genes involved in gamete interaction: evidence for positive selection, duplications and losses in vertebrates. PLoS One. 2012;7:e44548.\nMold DE, Dinitz AE, Sambandan DR. Regulation of zebrafish zona epllucida gene activity in developing oocytes. Biol Reprod. 2009;81:101–10.\nMonné M, Jovine L. A structural view of egg coat architecture and function in fertilization. Biol Reprod. 2011;85:661–9.\nMorgan CC, Loughran NB, Walsh TA, Harrison AJ, O’Connell MJ. Positive selection neighboring functionally essential sites and disease-implicated regions of mammalian reproductive proteins. BMC Evol Biol. 2010;10:39.\nMorgan CC, Loughran NB, Walsh TA, Harrison AJ, O’Connell MJ. Erratum to: positive selection neighboring functionally essential sites and disease-implicated regions of mammalian reproductive proteins. BMC Evol Biol. 2017;17:170.\nMuller MN, Thompson ME, Kahlenberg SM, Wrangham RW. Sexual coercion by male chimpanzees shows that female choice may be more apparent than real. Behav Ecol Sociobiol. 2011;65:921–33.\nMuro Y, Buffone MG, Okabe M, Gerton GL. Function of the acrosomal matrix: Zona pellucida 3 receptor (ZP3R\u002Fsp56) is not essential for mouse fertilization. Biol Reprod. 2012; 86:23.\nMurrell B, Weaver S, Smith MD, Wertheim JO, Murrell S, Aylward A, Eren K, Pollner T, Martin DP, Smith DM, Scheffler K, Kosakovsky Pond SL. Gene-wide identification of episodic selection. Mol Biol Evol. 2015;32:1365–71.\nMurrell B, Wertheim JO, Moola S, Weighill T, Scheffler K, Kosakovsky Pond SL. Detecting individual sites subject to episodic diversifying selection. PLoS Genet. 2012;8:e1002764.\nNeri-Arboleda I, Stott P, Arboleda NP. Home ranges, spatial movements and habitat associations of the Philippine tarsier (Tarsius syrichta) in Corella. Bohol J Zool. 2002;257:387–402.\nOkabe M. Beware of memes in the interpretation of your results – lessons from gene-disrupted mice in fertilization research. FEBS Lett. 2018a;592:2673–9.\nOkabe M. Sperm–egg interaction and fertilization: past, present, and future. Biol Reprod. 2018b;99:134–46.\nOkrój M, Blom AM. C4b-binding protein. In: Barnum S, Schein T, editors. The complement handbook. 2nd ed. New York: Elsevier; 2018. p. 251–9.\nPapadopoulos JS, Agarwala R. COBALT: constraint-based alignment tool for multiple protein sequences. Bioinformatics. 2007;23:1073–9.\nPatiño S, Keever CC, Sunday JM, Popovic I, Byrne M, Hart MW. Sperm bindin divergence under sexual selection and concerted evolution in sea stars. Mol Biol Evol. 2016;33:1988–2001.\nPrivman E, Penn O, Pupko T. Improving the performance of positive selection inference by filtering unreliable alignment regions. Mol Biol Evol. 2012;29:1–5.\nRedelings B. Erasing errors due to alignment ambiguity when estimating positive selection. Mol Biol Evol. 2014;31:1979–93.\nRohlfs RV, Swanson WJ, Weir BS. Detecting coevolution through allelic association between physically unlinked loci. Am J Human Genet. 2010;86:674–85.\nSabeti PC, Varilly P, Fry B, Lohmueller J, Hostetter E, Cotsapas C, Xie X, Byrne EH, McCarroll SA, Gaudet R, Schaffner SF, Lander ES. The international HapMap consortium. Genome-wide detection and characterization of positive selection in human populations. Nature. 2007;449:914–8.\nSchmidt HA, Strimmer K, Vingron M, von Haeseler A. Tree-puzzle: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics. 2002;18:502–4.\nSimmons JP, Nelson LD, Simonsohn U. False-positive psychology: undisclosed flexibility in data collection and analysis allows presenting anything as significant. Psychol Sci. 2011;22:1359–66.\nSimmons JP, Nelson LD, Simonsohn U. False-positive citations. Persp Psychol Sci. 2018;13:255–9.\nSmith MD, Wertheim JO, Weaver S, Murrell B, Scheffler K, Kosakovsky Pond SL. Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection. Mol Biol Evol. 2015;32:1342–53.\nSpringer MS, Emerling CA, Meredith RW, Janecka JE, Eizirik E, Murphy WJ. Waking the undead: implications of a soft explosive model for the timing of placental mammal diversification. Mol Phylogen Evol. 2017;106:86–102.\nSpringer MS, Meredith RW, Gatesy J, Emerling CA, Park J, Rabosky DL, Stadler T, Steiner C, Ryder OA, Janecka JE, Fisher CA, Murphy WJ. Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix. PLoS One. 2012;7:e49521.\nSwann CA, Cooper SJB, Breed WG. Molecular evolution of the carboxy terminal region of the zona pellucida 3 glycoprotein in murine rodents. Reproduction. 2007;133:697–708.\nSwann CA, Cooper SJB, Breed WG. The egg coat zona pellucida 3 glycoprotein – evolution of its putative sperm-binding region in Old World murine rodents (Rodentia: Muridae). Reprod Fertil Devel. 2017;29:2376–86.\nSwanson WJ, Vacquier VD. Reproductive protein evolution. Ann Rev Ecol Syst. 2002;33:161–79.\nSwanson WJ, Zhang ZH, Wolfner MF, Aquadro CF. Positive Darwinian selection drives the evolution of several female reproductive proteins in mammals. Proc Natl Acad Sci U S A. 2001;98:2509–14.\nThompson JD, Plewniak F, Ripp R, Thierry JC, Poch O. Towards a reliable objective function for multiple sequences alignments. J Mol Biol. 2001;314:937–51.\nTorgerson DG, Kulathinal RJ, Singh RS. Mammalian sperm proteins are rapidly evolving: evidence of positive selection in functionally diverse genes. Mol Biol Evol. 2004;19:1973–80.\nTurner LM, Hoekstra HE. Adaptive evolution of fertilization proteins within a genus: variation in ZP2 and ZP3 in deer mice (Peromyscus). Mol Biol Evol. 2006;32:1656–69.\nTurner LM, Hoekstra HE. Reproductive protein evolution within and between species: maintenance of divergent ZP3 alleles in Peromyscus. Mol Ecol. 2008;17:12616–28.\nVan de Peer Y, Taylor JS, Braasch I, Meyer A. The ghost of selection past: rates of evolution and functional divergence of anciently duplicated genes. J Mol Evol. 2001;53:436–46.\nVoight BF, Kudaravalli S, Wen X, Pritchard JK. A map of recent positive selection in the human genome. PLoS Biol. 2006;4:e72.\nWassarman PM. Mammalian fertilization: the strange case of sperm protein 56. BioEssays. 2009;31:153–8.\nWassarman PM, Litscher ES. A bespoke coat for eggs: getting ready for fertilization. Curr Topics Dev Biol. 2016;117:539–52.\nWassarman PM, Litscher ES. The mouse egg’s zona pellucida. Curr Topics Dev Biol. 2018;130:331–56.\nWeaver S, Shank SD, Spielman SJ, Li M, Muse SV, Kosakovsky Pond SL. Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes. Mol Biol Evol. 2018;35:773–7.\nWilburn DB, Swanson WJ. From molecules to mating: rapid evolution and biochemical studies of reproductive proteins. J Proteome. 2016;135:12–25.\nZerbino DR, Achuthan P, Akanni W, Amode MR, Barrell D, Bhai J, et al. Ensembl 2018. Nucl Acids Res. 2018;46:D754–61.\nZhai WW, Nielsen R, Goldman N, Yang ZH. Looking for Darwin in genomic sequences – validity and success of statistical methods. Mol Biol Evol. 2012;29:2889–93.",{"VOID":2090},"10.1186\u002Fs12862-019-1480-6","https:\u002F\u002Fbmcevolbiol.biomedcentral.com\u002Farticles\u002F10.1186\u002Fs12862-019-1480-6",[2093,2117],{"id":2094,"sortIndex":32,"researcher":28,"roles":2095,"affiliations":2096,"properties":2114,"displayName":2116,"givenName":28,"familyName":28},"f22f13f5-3aa7-4495-8aed-bf3e4021ba72",[962],[2097,2105],{"id":2098,"sortIndex":32,"affiliation":2099,"properties":28},"16ce6325-9cef-4c1b-8f29-47411034e0ac",{"id":2098,"createTime":28,"updateTime":28,"relativeEntities":2100,"slug":28,"properties":2101,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":2104,"statistic":28},[],{"title":2102},{"VI":2103},"Department of Medicine, Imperial College London, London, UK",[],{"id":2106,"sortIndex":40,"affiliation":2107,"properties":2113},"405cd925-1dad-462c-9934-8429601dfdd1",{"id":2106,"createTime":28,"updateTime":28,"relativeEntities":2108,"slug":28,"properties":2109,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":2112,"statistic":28},[],{"title":2110},{"EN":2111},"Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain",[],{},{"title":2115},{"VI":2116},"Claire C. Morgan",{"id":2118,"sortIndex":40,"researcher":28,"roles":2119,"affiliations":2120,"properties":2129,"displayName":2131,"givenName":28,"familyName":28},"e0cfa565-0e5a-4e7b-bcf6-93dbf22cee2d",[962],[2121],{"id":2122,"sortIndex":32,"affiliation":2123,"properties":28},"674c931a-edb6-4204-a2d0-36b7668d94cb",{"id":2122,"createTime":28,"updateTime":28,"relativeEntities":2124,"slug":28,"properties":2125,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":2128,"statistic":28},[],{"title":2126},{"VI":2127},"Department of Biological Sciences, Simon Fraser University, Burnaby, Canada",[],{"title":2130},{"VI":2131},"Michael W. Hart",{"url":2091,"publisher":2133,"properties":2152},{"id":868,"createTime":869,"updateTime":870,"relativeEntities":2134,"slug":872,"properties":2135,"entityType":25,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":32,"subjectFields":2138,"manageAffiliations":2139,"indexDatabases":2140,"url":28,"thumbnailPath":28,"statistic":2147,"gsStatistic":28,"type":28,"analyzePriority":28},[],{"title":2136,"eissn":2137},{"EN":875},{"VOID":877},[],[],[2141],{"id":883,"indexDatabase":2142,"url":889,"indexYears":890,"academicFieldIds":28,"indexDatabaseRanking":891},{"id":775,"createTime":28,"updateTime":28,"relativeEntities":2143,"label":2144,"description":2145,"key":781,"publicationTags":2146,"standard":28},[],{"EN":778,"VI":778},{"EN":778,"VI":780},[783],{"impactFactor":32,"impactFactorByYear":2148,"i10Index":903,"i10IndexLast5Year":140,"totalPublication":595,"totalPublicationByYear":2149,"totalCitation":905,"totalCitationByYear":2150,"totalCitationPerPublication":923,"totalCitationPerPublicationByYear":2151,"hindexLast5Year":688,"hindex":688},{"2012":894,"2013":895,"2014":896,"2015":593,"2016":897,"2017":898,"2018":899,"2019":900,"2020":901,"2021":902,"2022":42},{"2005":49,"2006":45,"2007":47,"2008":147,"2009":323,"2010":128,"2011":196,"2012":122,"2013":146,"2014":131,"2015":152,"2016":148,"2017":137,"2018":136,"2019":352,"2020":122},{"2005":907,"2006":908,"2007":909,"2008":910,"2009":911,"2010":912,"2011":913,"2012":914,"2013":915,"2014":916,"2015":917,"2016":918,"2017":919,"2018":920,"2019":921,"2020":922},{"2005":925,"2006":361,"2007":926,"2008":927,"2009":928,"2010":929,"2011":930,"2012":931,"2013":932,"2014":140,"2015":933,"2016":934,"2017":935,"2018":936,"2019":937,"2020":938},{"pages":2153,"volume":2154},{"VOID":1986},{"VOID":1736},"2019-07-25",[891]]