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Here, we show that amphibians developing in captivity lose substantial skin bacterial diversity, primarily due to reduced ongoing input from environmental sources. We combined studies of wild and captive amphibians with a database of over 1 000 strains that allows us to examine antifungal function of the skin microbiome. We tracked skin bacterial communities of 62 endangered boreal toads,\n            \u003Cjats:italic>Anaxyrus boreas\u003C\u002Fjats:italic>\n            , across 18 time points, four probiotic treatments, and two exposures to the lethal fungal pathogen\n            \u003Cjats:italic>Batrachochytrium dendrobatidis\u003C\u002Fjats:italic>\n            (\n            \u003Cjats:italic>Bd\u003C\u002Fjats:italic>\n            ) in captivity, and compared these to 33 samples collected from wild populations at the same life stage. As the amphibians in captivity lost the\n            \u003Cjats:italic>Bd\u003C\u002Fjats:italic>\n            -inhibitory bacteria through time, the proportion of individuals exposed to\n            \u003Cjats:italic>Bd\u003C\u002Fjats:italic>\n            that became infected rose from 33% to 100% in subsequent exposures. Inoculations of the\n            \u003Cjats:italic>Bd\u003C\u002Fjats:italic>\n            -inhibitory probiotic\n            \u003Cjats:italic>Janthinobacterium lividum\u003C\u002Fjats:italic>\n            resulted in a 40% increase in survival during the second\n            \u003Cjats:italic>Bd\u003C\u002Fjats:italic>\n            challenge, indicating that the effect of microbiome depletion was reversible by restoring\n            \u003Cjats:italic>Bd\u003C\u002Fjats:italic>\n            -inhibitory bacteria. Taken together, this study highlights the functional role of ongoing environmental inputs of skin-associated bacteria in mitigating a devastating amphibian pathogen, and that long-term captivity decreases this defensive function.\n          \u003C\u002Fjats:p>",{"EN":2055},"Probiotic treatment restores protection against lethal fungal infection lost during amphibian captivity",{"VOID":2057},"27655769",{"VOID":2059},"10.1098\u002Frspb.2016.1553","2024-09-18T06:07:25.020+00:00",[237],"https:\u002F\u002Froyalsocietypublishing.org\u002Fdoi\u002F10.1098\u002Frspb.2016.1553",[2064,2085,2104,2123,2138,2157],{"id":2065,"sortIndex":25,"researcher":24,"roles":2066,"affiliations":2067,"properties":2076,"displayName":2080,"givenName":24,"familyName":24},"17557307-308b-4f34-a40c-24b83629c4cb",[],[2068],{"id":2069,"sortIndex":25,"affiliation":2070,"properties":24},"bc84532e-bc3f-430e-a210-b81dca516fdf",{"id":2069,"createTime":24,"updateTime":24,"relativeEntities":2071,"slug":24,"properties":2072,"entityType":24,"verifyStatus":24,"verifyTime":24,"verifyNote":24,"languages":24,"translateLanguages":24,"viewCount":24,"url":24,"parentIds":2075,"statistic":24},[],{"title":2073},{"EN":2074},"Department of Ecology and Evolutionary Biology, University of Colorado, Ramaley N122, UCB 334, Boulder, CO 80309, USA",[],{"orcid":2077,"title":2079,"gsAuthor":2081,"openalex":2083},{"VOID":2078},"https:\u002F\u002Forcid.org\u002F0000-0001-9521-6282",{"EN":2080},"Jordan G. 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Concurrently, examples of adaptive gene duplications to various environmental conditions in different species have been described. At this point, it is too early to tell whether or not a substantial fraction of gene copies have initially achieved fixation by positive selection for increased dosage. Nevertheless, enough examples have accumulated in the literature that such a possibility should be considered. Here, I review the recent examples of adaptive gene duplications and make an attempt to draw generalizations on what types of genes may be particularly prone to be selected for under certain environmental conditions. The identification of copy-number variation in ecological field studies of species adapting to stressful or novel environmental conditions may improve our understanding of gene duplications as a mechanism of adaptation and its relevance to the long-term persistence of gene duplications.\u003C\u002Fjats:p>",{"EN":2356},"Gene duplication as a mechanism of genomic adaptation to a changing environment",{"VOID":2358},"22977152",{"VOID":2360},"10.1098\u002Frspb.2012.1108","2024-07-19T02:24:04.800+00:00",[237],"https:\u002F\u002Froyalsocietypublishing.org\u002Fdoi\u002F10.1098\u002Frspb.2012.1108",[2365],{"id":2366,"sortIndex":25,"researcher":24,"roles":2367,"affiliations":2368,"properties":2377,"displayName":2381,"givenName":24,"familyName":24},"cc7a1ae4-5f1f-4b08-9ca9-1d43619d43e9",[],[2369],{"id":2370,"sortIndex":25,"affiliation":2371,"properties":24},"02e37a61-2b62-4de7-bd86-af36546dbc96",{"id":2370,"createTime":24,"updateTime":24,"relativeEntities":2372,"slug":24,"properties":2373,"entityType":24,"verifyStatus":24,"verifyTime":24,"verifyNote":24,"languages":24,"translateLanguages":24,"viewCount":24,"url":24,"parentIds":2376,"statistic":24},[],{"title":2374},{"EN":2375},"Institució Catalana de Recerca i Estudis Avançats (ICREA), Centre for Genomic Regulation (CRG) and Universitat Pompeu Fabra (UPF), 88 Dr Aiguader, Barcelona 08003, Spain",[],{"orcid":2378,"title":2380,"gsAuthor":2382,"openalex":2384},{"VOID":2379},"https:\u002F\u002Forcid.org\u002F0000-0001-8243-4694",{"EN":2381},"Fyodor A. 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