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Rev. Mol. Cell Biol., 16, 643, 10.1038\u002Fnrm4067\nBruggeman, 2005, Ink4a and Arf differentially affect cell proliferation and neural stem cell self-renewal in Bmi1-deficient mice, Genes Dev., 19, 1438, 10.1101\u002Fgad.1299305\nChaumeil, 2008, Combined immunofluorescence, RNA fluorescent in situ hybridization, and DNA fluorescent in situ hybridization to study chromatin changes, transcriptional activity, nuclear organization, and X-chromosome inactivation, Methods Mol. Biol., 463, 297, 10.1007\u002F978-1-59745-406-3_18\nDi Croce, 2013, Transcriptional regulation by Polycomb group proteins, Nat. Struct. Mol. Biol., 20, 1147, 10.1038\u002Fnsmb.2669\nDinant, 2013, Enhanced chromatin dynamics by FACT promotes transcriptional restart after UV-induced DNA damage, Mol. Cell, 51, 469, 10.1016\u002Fj.molcel.2013.08.007\nEbert, 2013, Control of antigen receptor diversity through spatial regulation of V(D)J recombination, Cold Spring Harb. Symp. Quant. 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Cell, 49, 808, 10.1016\u002Fj.molcel.2013.02.013\nSonoda, 1997, B cell development under the condition of allelic inclusion, Immunity, 6, 225, 10.1016\u002FS1074-7613(00)80325-8\nSu, 2003, Ezh2 controls B cell development through histone H3 methylation and Igh rearrangement, Nat. Immunol., 4, 124, 10.1038\u002Fni876\nTavares, 2012, RYBP-PRC1 complexes mediate H2A ubiquitylation at polycomb target sites independently of PRC2 and H3K27me3, Cell, 148, 664, 10.1016\u002Fj.cell.2011.12.029\nUi, 2015, Transcriptional elongation factor ENL phosphorylated by ATM recruits polycomb and switches off transcription for DSB repair, Mol. 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2012, Mitochondrial DNA metabolism in early development of zebrafish (Danio rerio), Biochim. Biophys. Acta, 1817, 1002, 10.1016\u002Fj.bbabio.2012.03.019\nArunabh, 2003, Body fat content and 25-hydroxyvitamin D levels in healthy women, J. Clin. Endocrinol. Metab., 88, 157, 10.1210\u002Fjc.2002-020978\nBlumberg, 2006, Complex role of the vitamin D receptor and its ligand in adipogenesis in 3T3-L1 cells, J. Biol. Chem., 281, 11205, 10.1074\u002Fjbc.M510343200\nCarlberg, 2013, Vitamin D receptor signaling mechanisms: integrated actions of a well-defined transcription factor, Steroids, 78, 127, 10.1016\u002Fj.steroids.2012.10.019\nCermak, 2011, Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting, Nucleic Acids Res., 39, e82, 10.1093\u002Fnar\u002Fgkr218\nCheng, 2003, De-orphanization of cytochrome P450 2R1: a microsomal vitamin D 25-hydroxilase, J. Biol. Chem., 278, 38084, 10.1074\u002Fjbc.M307028200\nCraig, 2012, Research resource: whole transcriptome RNA sequencing detects multiple 1α,25-dihydroxyvitamin D(3)-sensitive metabolic pathways in developing zebrafish, Mol. Endocrinol., 26, 1630, 10.1210\u002Fme.2012-1113\nDemizieux, 2002, Conjugated linoleic acid isomers in mitochondria: evidence for an alteration of fatty acid oxidation, J. Lipid Res., 43, 2112, 10.1194\u002Fjlr.M200170-JLR200\nEaton, 2002, Control of mitochondrial β-oxidation flux, Prog. Lipid Res., 41, 197, 10.1016\u002FS0163-7827(01)00024-8\nElamin, 2011, Vitamin D and cardiovascular outcomes: a systematic review and meta-analysis, J. Clin. Endocrinol. Metab., 96, 1931, 10.1210\u002Fjc.2011-0398\nFinn, 2006, Proteolytic and lipolytic responses to starvation, Nutrition, 22, 830, 10.1016\u002Fj.nut.2006.04.008\nFlynn, 2009, Ontogeny and nutritional control of adipogenesis in zebrafish (Danio rerio), J Lipid Res., 50, 1641, 10.1194\u002Fjlr.M800590-JLR200\nGeorge, 2012, Effect of vitamin D supplementation on glycaemic control and insulin resistance: a systematic review and meta-analysis, Diabet. Med., 29, e142, 10.1111\u002Fj.1464-5491.2012.03672.x\nGoldstone, 2010, Identification and developmental expression of the full complement of cytochrome P450 genes in zebrafish, BMC Genomics, 11, 643, 10.1186\u002F1471-2164-11-643\nHaim, 2013, A chromatin immunoprecipitation (ChIP) protocol for use in whole human adipose tissue, Am. J. Physiol. Endocrinol. Metab., 305, E1172, 10.1152\u002Fajpendo.00598.2012\nHedman, 2014, Development of a sensitive LC\u002FMS\u002FMS method for vitamin D metabolites: 1,25 dihydroxyvitamin D2&3 measurement using a novel derivatization agent, J. Chromatogr. B Analyt. Technol. Biomed. Life Sci., 953-954, 62, 10.1016\u002Fj.jchromb.2014.01.045\nHolick, 2011, Vitamin D: evolutionary, physiological and health perspectives, Curr. Drug Targets, 12, 4, 10.2174\u002F138945011793591635\nKerner, 2000, Fatty acid import into mitochondria, Biochim. Biophys. Acta, 1486, 1, 10.1016\u002FS1388-1981(00)00044-5\nKimmel, 1995, Stages of embryonic development of the zebrafish, Dev. Dyn., 203, 253, 10.1002\u002Faja.1002030302\nKollitz, 2015, Molecular cloning, functional characterization, and evolutionary analysis of vitamin D receptors isolated from basal vertebrates, PLoS ONE, 10, e0122853, 10.1371\u002Fjournal.pone.0122853\nLechner, 2007, 1α,25-dihydroxyvitamin D3 downregulates CYP27B1 and induces CYP24A1 in colon cells, Mol. Cell. Endocrinol., 263, 55, 10.1016\u002Fj.mce.2006.08.009\nLi, 1997, Cloning and characterization of the vitamin D receptor from Xenopus laevis, Endocrinology, 138, 2347, 10.1210\u002Fendo.138.6.5210\nLin, 2012, Action of vitamin D and the receptor, VDRa, in calcium handling in zebrafish (Danio rerio), PLoS ONE, 7, e45650, 10.1371\u002Fjournal.pone.0045650\nMalloy, 2012, Genetic disorders and defects in vitamin D action, Rheum. Dis. Clin. North Am., 38, 93, 10.1016\u002Fj.rdc.2012.03.009\nMarcotorchino, 2014, Vitamin D protects against diet-induced obesity by enhancing fatty acid oxidation, J. Nutr. Biochem., 25, 1077, 10.1016\u002Fj.jnutbio.2014.05.010\nMcMenamin, 2013, Dwarfism and increased adiposity in the gh1 mutant zebrafish vizzini, Endocrinology, 154, 1476, 10.1210\u002Fen.2012-1734\nMinchin, 2011, In vivo analysis of white adipose tissue in zebrafish, Methods Cell Biol., 105, 63, 10.1016\u002FB978-0-12-381320-6.00003-5\nNarvaez, 2009, Lean phenotype and resistance to diet-induced obesity in vitamin D receptor knockout mice correlates with induction of uncoupling protein-1 in white adipose tissue, Endocrinology, 150, 651, 10.1210\u002Fen.2008-1118\nO’Neill, 2013, AMPK regulation of fatty acid metabolism and mitochondrial biogenesis: implications for obesity, Mol. Cell. Endocrinol., 366, 135, 10.1016\u002Fj.mce.2012.06.019\nOmdahl, 2002, Hydroxylase enzymes of the vitamin D pathway: expression, function, and regulation, Annu. Rev. Nutr., 22, 139, 10.1146\u002Fannurev.nutr.22.120501.150216\nPittas, 2007, The role of vitamin D and calcium in type 2 diabetes. A systematic review and meta-analysis, J. Clin. Endocrinol. Metab., 92, 2017, 10.1210\u002Fjc.2007-0298\nProsser, 2004, Enzymes involved in the activation and inactivation of vitamin D, Trends Biochem. Sci., 29, 664, 10.1016\u002Fj.tibs.2004.10.005\nRicciardi, 2015, 1,25-Dihydroxyvitamin D3\u002Fvitamin D receptor suppresses brown adipocyte differentiation and mitochondrial respiration, Eur. J. Nutr., 54, 1001, 10.1007\u002Fs00394-014-0778-9\nRosen, 2012, The nonskeletal effects of vitamin D: an Endocrine Society scientific statement, Endocr. Rev., 33, 456, 10.1210\u002Fer.2012-1000\nScarpulla, 2011, Metabolic control of mitochondrial biogenesis through the PGC-1 family regulatory network, Biochim. Biophys. Acta, 1813, 1269, 10.1016\u002Fj.bbamcr.2010.09.019\nSchuster, 2006, Selective inhibitors of vitamin D metabolism--new concepts and perspectives, Anticancer Res., 26, 2653\nSharma, 2007, Peroxisome proliferator-activated receptor γ and adipose tissue—understanding obesity-related changes in regulation of lipid and glucose metabolism, J. Clin. Endocrinol. Metab., 92, 386, 10.1210\u002Fjc.2006-1268\nSundaram, 2014, 1α,25-dihydroxyvitamin D3 modulates CYP2R1 gene expression in human oral squamous cell carcinoma tumor cells, Horm. Cancer, 5, 90, 10.1007\u002Fs12672-014-0170-5\nvan den Ouweland, 2010, Measurement of 25-OH-vitamin D in human serum using liquid chromatography tandem-mass spectrometry with comparison to radioimmunoassay and automated immunoassay, J. Chromatogr. B Analyt. Technol. Biomed. Life Sci., 878, 1163, 10.1016\u002Fj.jchromb.2010.03.035\nVentura-Clapier, 2008, Transcriptional control of mitochondrial biogenesis: the central role of PGC-1α, Cardiovasc. 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USA, 110, 7934, 10.1073\u002Fpnas.1306164110\nSchatlowski, 2014, Hypomethylated pollen bypasses the interploidy hybridization barrier in Arabidopsis, Plant Cell, 26, 3556, 10.1105\u002Ftpc.114.130120\nSchon, 2017, Widespread contamination of Arabidopsis embryo and endosperm transcriptome data sets, Plant Cell, 29, 608, 10.1105\u002Ftpc.16.00845\nScott, 1998, Parent-of-origin effects on seed development in Arabidopsis thaliana, Development, 125, 3329, 10.1242\u002Fdev.125.17.3329\nVu, 2013, RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis, Development, 140, 2953, 10.1242\u002Fdev.092981\nWolff, 2015, Paternally expressed imprinted genes establish postzygotic hybridization barriers in Arabidopsis thaliana, eLife, 4, 10074, 10.7554\u002FeLife.10074\nXin, 2014, Dynamic parent-of-origin effects on small interfering RNA expression in the developing maize endosperm, BMC Plant Biol., 14, 192, 10.1186\u002Fs12870-014-0192-8\nYang, 2017, The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci, Genome Biol., 18, 103, 10.1186\u002Fs13059-017-1226-y\nZhang, 2014, Genome-wide high resolution parental-specific DNA and histone methylation maps uncover patterns of imprinting regulation in maize, Genome Res., 24, 167, 10.1101\u002Fgr.155879.113",{"EN":1398},"A Small RNA Pathway Mediates Allelic Dosage in Endosperm",{"VOID":1400},"10.1016\u002Fj.celrep.2017.11.078","https:\u002F\u002Fwww.sciencedirect.com\u002Fscience\u002Farticle\u002Fpii\u002FS221112471731745X",[1403,1432,1444,1463],{"id":1404,"sortIndex":19,"researcher":18,"roles":1405,"affiliations":1406,"properties":1429},"bb6d9651-36ad-429d-8cdb-eae07457b4ae",[105],[1407,1417],{"id":18,"sortIndex":19,"affiliation":1408,"properties":18},{"id":1409,"createTime":1410,"updateTime":1411,"relativeEntities":1412,"slug":1413,"properties":1414,"entityType":39,"verifyStatus":17,"verifyTime":18,"verifyNote":18,"syncStatus":17,"languages":18,"translateLanguages":18,"viewCount":19},"141a17d7-ba60-469f-ab43-d6089bd4a5c7","2023-12-07T09:03:27.105+00:00","2025-02-05T10:03:45.025+00:00",[],"Whitehead-Institute-for-Biomedical-Research-Cambridge-MA-02142-USA",{"title":1415},{"VI":1416},"Whitehead Institute for Biomedical Research, Cambridge, MA 02142 USA",{"id":1418,"sortIndex":139,"affiliation":1419,"properties":1428},"8190c59a-5e52-4976-8278-b87732a94bfb",{"id":1420,"createTime":1421,"updateTime":1422,"relativeEntities":1423,"slug":1424,"properties":1425,"entityType":39,"verifyStatus":17,"verifyTime":18,"verifyNote":18,"syncStatus":17,"languages":18,"translateLanguages":18,"viewCount":19},"8a0391a2-45d8-4f4d-bfd7-fe1988bdc9a9","2024-01-08T16:15:01.946+00:00","2025-02-05T10:03:55.133+00:00",[],"Department-of-Biology-Massachusetts-Institute-of-Technology-Cambridge-MA-02139-USA",{"title":1426},{"VI":1427},"Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139 USA",{},{"title":1430},{"VI":1431},"Robert M. 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