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Willis; citation_publisher=Butterworth",{},{"id":448,"createTime":449,"updateTime":450,"relativeEntities":451,"slug":452,"properties":453,"entityType":117,"verifyStatus":194,"verifyTime":464,"verifyNote":196,"languages":22,"translateLanguages":22,"viewCount":23,"primaryUrl":465,"fullTextUrl":22,"authors":466,"publicationType":124,"publisherRelationship":527,"citationCount":579,"citationInfo":580,"publishDate":583,"publishYear":581,"citationAnalyzeStatus":272,"lastCitationAnalyze":584,"indexDatabases":585,"openAccess":22,"references":22,"isForceReanalyzing":180},"9098d1e7-b8fc-448b-80e3-84661e9bac92","2024-01-13T18:29:35.116+00:00","2026-07-27T23:41:19.329+00:00",[],"Developmental-gene-expression-as-a-phylogenetic-data-class-support-for-the-monophyly-of-Arachnopulmonata",{"abstract":454,"title":456,"gsPaper":458,"references":460,"doi":462},{"EN":455},"Despite application of genome-scale datasets, the phylogenetic placement of scorpions within arachnids remains contentious between two different phylogenetic data classes. Paleontologists continue to recover scorpions in a basally branching position, partly owing to their morphological similarity to extinct marine orders like Eurypterida (sea scorpions). Phylogenomic datasets consistently recover scorpions in a derived position, as the sister group of Tetrapulmonata (a clade of arachnids that includes spiders). To adjudicate between these hypotheses using a rare genomic change (RGC), we leveraged the recent discovery of ancient paralogy in spiders and scorpions to assess phylogenetic placement. We identified homologs of four transcription factors required for appendage patterning (dachshund, homothorax, extradenticle, and optomotor blind) in arthropods that are known to be duplicated in spiders. Using genomic resources for a spider, a scorpion, and a harvestman, we conducted gene tree analyses and assayed expression patterns of scorpion gene duplicates. Here we show that scorpions, like spiders, retain two copies of all four transcription factors, whereas arachnid orders like mites and harvestmen bear a single copy. A survey of embryonic expression patterns of the scorpion paralogs closely matches those of their spider counterparts, with one paralog consistently retaining the putatively ancestral pattern found in the harvestman, as well as the mite, and\u002For other outgroups. These data comprise a rare genomic change in chelicerate phylogeny supporting the inference of a distal placement of scorpions. Beyond demonstrating the diagnostic power of developmental genetic data as a phylogenetic data class, a derived placement of scorpions within the arachnids, together with an array of stem-group Paleozoic scorpions that occupied marine habitats, effectively rules out a scenario of a single colonization of terrestrial habitat within Chelicerata, even in tree topologies contrived to recover the monophyly of Arachnida.",{"EN":457},"Developmental gene expression as a phylogenetic data class: support for the monophyly of Arachnopulmonata",{"VOID":459},"[\"6572028472516132215\"]",{"VOID":461},"Aria C, Caron J-B (2019) A middle Cambrian arthropod with chelicerae and proto-book gills. 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Cladistics 6:1–38. https:\u002F\u002Fdoi.org\u002F10.1111\u002Fj.1096-0031.1990.tb00523.x\nShultz J (2007) A phylogenetic analysis of the arachnid orders based on morphological characters\nStamatakis A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30(9):1312–1313. https:\u002F\u002Fdoi.org\u002F10.1093\u002Fbioinformatics\u002Fbtu033\nTuretzek N, Pechmann M, Schomburg C et al (2015) Neofunctionalization of a duplicate dachshund gene underlies the evolution of a novel leg segment in arachnids. Mol Biol Evol 33:109–121. https:\u002F\u002Fdoi.org\u002F10.1093\u002Fmolbev\u002Fmsv200\nTuretzek N, Khadjeh S, Schomburg C, Prpic N-M (2017) Rapid diversification of homothorax expression patterns after gene duplication in spiders. BMC Evol Biol 17:168. https:\u002F\u002Fdoi.org\u002F10.1186\u002Fs12862-017-1013-0\nWaddington J, Rudkin DM, Dunlop JA (2015) A new mid-Silurian aquatic scorpion—one step closer to land? Biol Lett 11:20140815–20140815. https:\u002F\u002Fdoi.org\u002F10.1016\u002Fj.palaeo.2008.05.008\nWang B, Dunlop JA, Selden PA, Garwood RJ, Shear WA, Müller P, Lei X (2018) Cretaceous arachnid Chimerarachne yingi gen. Et sp. nov. illuminates spider origins. Nat Ecol Evol 2:614–622. https:\u002F\u002Fdoi.org\u002F10.1038\u002Fs41559-017-0449-3",{"VOID":463},"10.1007\u002Fs00427-019-00644-6","2024-05-16T17:05:31.401+00:00","https:\u002F\u002Flink.springer.com\u002Farticle\u002F10.1007\u002Fs00427-019-00644-6",[467,491,514],{"id":468,"sortIndex":23,"researcher":22,"roles":469,"affiliations":470,"properties":488,"displayName":490,"givenName":22,"familyName":22},"33d28c0b-1844-49d4-bb13-ae3f4571bc5f",[202],[471,479],{"id":472,"sortIndex":23,"affiliation":473,"properties":22},"ec7022b4-c858-4d72-815b-85bced6245ee",{"id":472,"createTime":22,"updateTime":22,"relativeEntities":474,"slug":22,"properties":475,"entityType":22,"verifyStatus":22,"verifyTime":22,"verifyNote":22,"languages":22,"translateLanguages":22,"viewCount":22,"url":22,"parentIds":478,"statistic":22},[],{"title":476},{"VI":477},"Department of Integrative Biology, University of Wisconsin-Madison, Madison, USA",[],{"id":480,"sortIndex":93,"affiliation":481,"properties":487},"dace9572-dd67-407e-b05f-fda1f11b2969",{"id":480,"createTime":22,"updateTime":22,"relativeEntities":482,"slug":22,"properties":483,"entityType":22,"verifyStatus":22,"verifyTime":22,"verifyNote":22,"languages":22,"translateLanguages":22,"viewCount":22,"url":22,"parentIds":486,"statistic":22},[],{"title":484},{"VI":485},"Department of Developmental Biology, Washington University of St. Louis, St. Louis, USA",[],{},{"title":489},{"VI":490},"Erik D. 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Roux' Arch.128 (1933).","https:\u002F\u002Flink.springer.com\u002Farticle\u002F10.1007\u002FBF00573838",{"doi":684},"10.1007\u002FBF00573838",{"id":22,"text":686,"url":22,"identifiers":687},"Goerttler, K.: Die Formbildung der Medullaranlage bei Urodelen. Roux' Arch.106 (1925).",{},{"id":689,"text":690,"url":691,"identifiers":692},"e8f18d43-201b-41e1-9034-79ae60cbbe77","Koether, F.: Über Duplicitas anterior, posterior und posterior, partim cruciata beiTriton. Roux' Arch.110 (1927).","https:\u002F\u002Flink.springer.com\u002Farticle\u002F10.1007\u002FBF02079042",{"doi":693},"10.1007\u002FBF02079042",{"id":22,"text":695,"url":22,"identifiers":696},"Lehmann, F. E.: Alkoholbeständige Fixation vitaler Färbungen von Nilblausulfat, demonstriert an Schnittpräparaten von Keimen vonTriton taeniatus. Verh. dtsch. zool. Ges.1928.",{},{"id":698,"text":699,"url":700,"identifiers":701},"4c68646b-0035-4279-8000-0006b275d4fa","Mangold, O.: Fragen der Regulation und Determination an umgeordneten Furchungsstadien und verschmolzenen Keimen vonTriton. Roux' Arch.47 (1920).","https:\u002F\u002Flink.springer.com\u002F10.1007\u002Fs10440-022-00541-7",{"doi":702},"10.1007\u002Fs10440-022-00541-7",{"id":22,"text":704,"url":22,"identifiers":705},"- Transplantationsversuche zur Frage der Spezifität und der Bildung der Keimblätter. Arch. Entw.mechan.100 (1924).",{},{"id":698,"text":707,"url":700,"identifiers":708},"Mangold, O. u.F. Seidel: Homoplastische und heteroplastische Verschmelzung ganzerTriton-Keime. Roux' Arch.111 (1927).",{"doi":702},{"id":698,"text":710,"url":700,"identifiers":711},"Rund, G. u.H. Spemann: Die Entwicklung isolierter dorsaler und lateraler Gastrulahälften vonTriton taeniatus undalpestris, ihre Regulation und Postgeneration. Arch. Entw.mechan.1923, 52–97.",{"doi":702},{"id":22,"text":713,"url":22,"identifiers":714},"Schotté, O.: Transplantationsversuche über die Determination der Organanlagen von Anurenkeimen. I. Allgemeines und Technik der Transplantation. Roux' Arch.123 (1930).",{},{"id":698,"text":716,"url":700,"identifiers":717},"Spemann, H.: Entwicklungsphysiologische Studien amTriton-Ei. Roux' Arch.12,15,16 (1901–1903).",{"doi":702},{"id":22,"text":719,"url":22,"identifiers":720},"- Über die Determination der ersten Organanlagen des Amphibienembryos. I.–IV. Arch. Entw.mechan.43 (1918).",{},{"id":698,"text":722,"url":700,"identifiers":723},"Spemann, H. u.E. Bautzmann, geb. Wessel: Über Regulation vonTriton-Keimen mit überschüssigem und fehlendem medianen Material. Roux' Arch.110 (1927).",{"doi":702},{"id":698,"text":725,"url":700,"identifiers":726},"Vogt, W.: Gestaltungsanalyse am Amphibienkeim mit örtlicher Vitalfärbung. II. Teil. Gastrulation und Mesodermbildung bei Urodelen und Anuren. Roux' Arch.120 (1929).",{"doi":702},{"id":698,"text":728,"url":700,"identifiers":729},"Weber, H.: Über Induktion von Medullarplatte durch seitlich angeheilte Keimhälften beiTriton taeniatus. Roux' Arch.113 (1928).",{"doi":702},{"id":698,"text":731,"url":700,"identifiers":732},"Wessel, E.: Experimentell erzeugte Duplicitas cruciata beiTriton. Roux' Arch.107 (1926).",{"doi":702},{"id":734,"createTime":735,"updateTime":736,"relativeEntities":737,"slug":738,"properties":739,"entityType":117,"verifyStatus":194,"verifyTime":750,"verifyNote":196,"languages":22,"translateLanguages":22,"viewCount":23,"primaryUrl":751,"fullTextUrl":22,"authors":752,"publicationType":124,"publisherRelationship":794,"citationCount":22,"citationInfo":22,"publishDate":846,"publishYear":847,"citationAnalyzeStatus":848,"lastCitationAnalyze":849,"indexDatabases":850,"openAccess":22,"references":22,"isForceReanalyzing":180},"b63051a2-d858-4d22-815a-a02b57221e27","2024-02-09T06:39:10.967+00:00","2026-07-23T11:41:34.084+00:00",[],"Stability-of-positional-identity-of-axolotl-blastema-cells-in-vitro",{"abstract":740,"title":742,"gsPaper":744,"references":746,"doi":748},{"EN":741},"Previous grafting experiments have demonstrated that cells from non-contiguous positions within developing and regenerating limbs differ in a property referred to as positional identity. The goal of this study was to determine how long the positional identity of axolotl limb blastema cells is stable during culture in vitro. We have developed an assay for posterior positional properties such that blastema cells can be cultured and then grafted into anterior positions in host blastemas, to determine if they can stimulate supernumerary digit formation. We report that posterior blastema cells are able to maintain their positional identities for at least a week in culture. In addition, we observed that blastema cells are able to rapidly degrade collagenous substrates in vitro, a property that apparently distinguishes them from limb cells of other vertebrates. These results provide information regarding the time boundaries within which the positional properties of blastema cells can be studied and manipulated in vitro.",{"EN":743},"Stability of positional identity of axolotl blastema cells in vitro",{"VOID":745},"[]",{"VOID":747},"Bryant SV, Iten L (1974) The regulative ability of the limb regeneration blastema of Notophthalmus viridescens: Experiments in situ. Roux's Arch Dev Biol 174:90–101\nBryant SV, Iten LE (1977) Intercalary and supernumerary regeneration in regenerating and mature limbs of Notophthalmus viridescens. J Exp Zool 202:1–16\nBryant SV, French V, Bryant PJ (1981) Distal Regeneration and Symmetry. Science 212:993–1002\nBryant SV, Gardiner DM, Muneoka K (1987) Limb development and regeneration. Am Zool 27:675–696\nConn ME, Dearlove GE, Dresden MH (1979) Selection of a chemically defined medium for culturing adult newt forelimb regenerates. In Vitro 15:409–414\nDollé P, Izpisua-Benmonte J-C, Falkenstein H, Renucci A, Duboule D (1989) Coordinate expression of the murine Hox-5 complex homoeobox-containing genes during limb pattern formation. Nature 342:767–772\nDresden MH, Gross J (1970) The collagenolytic enzyme of the regenerating limb of the newt Triturus viridecens. Dev Biol 22:129–137\nFerretti P, Brookes JP (1988) Culture of newt cells from different tissues and their expression of a regeneration-associated antigen. J Exp Zool 247:77–91\nGardiner DM, Bryant SV (1989) Organization of positional information in the axolotl limb. J Exp Zool 251:47–55\nGardiner DM, Gaudier C, Bryant SV (1992) Mouse limb bud cells respond to retinoic acid in vitro with reduced growth. J Exp Zool 263:406–413\nGardiner DM, Muneoka K, Bryant SV (1986) The migration of dermal cells during blastema formation in axolotls. Dev Biol 118:488–493\nGrillo HC, Lapiere CM, Dresden MH, Gross J (1968) Collagenolytic activity in regenerating forelimbs of the adult newt (Triturus viridescens). Dev Biol 17:571–583\nHayamizu TF, Bryant SV (1992) Retinoic acid respecifies limb bud cells in vitro. J Exp Zool: 263:423–429\nHayamizu TF, Sessions SK, Wanck N, Bryant SV (1991) Effects of localized application of transforming growth factor β1 on developing chick limbs. Dev Biol 145:164–173\nHonig LS (1983) Polarizing activity of the avian limb examined on a cellular basis. In: Fallon JF, Caplan AI (eds) Limb development and regeneration. A R Liss, Inc, New York, pp 99–108\nIzpisúa-Belmonte J-C, Tickle C, Dollé P, Wolpert L, Duboule D (1991) Expression of the homebox Hox-4 genes and the specification of position in chick wing development. Nature 350: 585–589\nJabaily JA, Blue P, Singer M (1982) The culturing of dissociated newt forelimb regenerate cells. J Exp Zool 219:67–73\nMacCabe AB, Gasseling MT, Saunders JW (1973) Spatiotemporal distribution of mechanisms that control outgrowth and anteroposterior polarization of the limb bud in the chick embryo. Mechanism Ageing Dev 2:1–12\nMuneoka K, Bryant SV (1984) Cellular contribution to supernumerary limbs in the axolotl, Ambystoma mexicanum. Dev Biol 105:166–178\nMuneoka K, Holler-Dinsmore G, Bryant SV (1986) Intrinsic control of regenerative loss in Xenopus laevis limbs. J Exp Zool 240:47–54\nMuneoka K, Holler-Dinsmore GV, Bryant SV (1985) A quantitative analysis of regeneration from chimaeric limb stumps in the axolotl. J Embryol Exp Morphol 90:1–12\nNohno T, Noji S, Koyama E, Ohyama K, Myokai F, Kuroiwa A, Saito T, Taniguchi S (1991) Involvement of the Chox-4 chicken homeobox genes in determination of anteroposterior axial polarity during limb development. Cell 64:1197–1205\nShi C, Muneoka K (1992) Position-specific growth of mouse limb bud cells in vitro. Dev Biol 151:9–17\nTank PW, Carlson BM, Connelly TG (1976) A staging system for forelimb regeneration in the axolotl, Ambystoma mexicanum. J Morphol 150:117–128\nTank PW, Connelly TG, Bookstein FL (1985) Cellular behavior in the anteroposterior axis of the regenerating forelimb of the axolotl, Ambystoma mexicanum. Dev Biol 109:215–223\nTickle C (1981) The number of polarizing region cells required to specify additional digits in the developing chick wing. Nature 289:295–298\nTickle C, Alberts B, Wolpert L, Lee J (1982) Local application of retinoic acid to the limb bond [sic] mimics the action of the polarizing region. Nature 296:564–566\nTickle C, Summerbell D, Wolpert L (1975) Positional signalling and specification of digits in chick limb morphogenesis. Nature 254:199–202\nYokouchi Y, Sasaki H, Kuroiwa A (1991) Homeobox gene expression correlated with the bifurcation process of limb cartilage development. 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Edinburgh: Oliver and Boyd Ltd. 1963\nGeigy, R.: Action de l'ultra-violet sur le pole germinal dans l'oeuf deDrosophila melanogaster (castration et mutabilite). Rev. Suisse Zool.38, 187–288 (1931)\nGhelelovitch, S.: La sensibilité des oeufs de la Drosophile (Drosophila melanogaster, Meig.) à l'action létale des rayons ultra-violets. I. Evolution de la sensibilité avec l'age de l'embryon. Int. J. Rad. Biol.11, 225–271 (1966)\nGraziosi, G., Micali, F.: Differential responses to ultraviolet irradiation of the polar cytoplasm ofDrosophila egg. Wilhelm Roux' Arch.175, 1–11 (1974)\nGraziosi, G., Roberts, D. B.: Molecular anisotrophy of earlyDrosophila embryo. Nature258, 157–159 (1975)\nHathaway, D. S., Selman, G. G.: Certain aspects of cell lineage and morphogenes studied in embryos ofDrosophila melanogaster with an ultraviolet micro-beam. J. Embryol. exp. 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(Diptera, Chironomidae). Wilhelm Roux' Arch.168, 63–84 (1971)\nLevin, V. L.: Chans in the UV sensitivity in the embryo-genesis ofDrosophila. Tsitologiya13, 212–220 (1971)\nLison, L.: Statistica applicata alla biologia sperimental. Milano, Casa Editrice Ambrosiana 1961\nMahowald, A. P.: Polar granules ofDrosophila. IV. Cytochemical studies showing loss of RNA from polar granules during early stages of embryogenesis. J. Exp. Zool.176, 345–352 (1971)\nMoreno, F.: Contribution a l'étude de la létalité et de la stérilité induites chezDrosophila melanogaster par irradiation U.V. des cellules polaires de l'oeuf. II. Action sterilisante. Int. J. Radiat. Biol.16, 451–465 (1969)\nPoulson, D. F.: Histogenesis, organogenesis and differentiation in the embryo ofDrosophila melanogaster Meigen. In: “The Biology of Drosophila”. Ch. 3. M. Demerec (ed). New York: John Wiley and Sons 1950\nPoulson, D. F., Waterhouse, D. F.: Experimental studies on pole cells and midgut differentiation in Diptera. Aust. J. biol. Sci.13, 541–567 (1960)\nPrudhommeau, C., Lauge, G.: Irradiation UV des cellules polaires de l'oeuf chezDrosophila melanogaster. II. Estimation du nombre des cellules polaires à l'origine de la lignée germinale. Mutation Res.14, 43–52 (1972)\nOkada M., Kleinman, F. A., Schneiderman, H. A.: Restoration of fertility in sterilisedDrosophila eggs by transplantation of polar cytoplasm. Develop. Biol.37, 43–54 (1974)\nSnedecor, G. W., Cochran, W. G.: Statistical methods. Sixth ed. Ames, The Iowa State College Press 1976\nWarn, R.: Restoration of fertility in UV irradiatedDrosophila embryos by injection of posterior pole plasm. J. Embryol. exp. Morph. 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Wilhelm Roux' Archiv168, 242–268 (1971).\n—, Brökelmann, J.: Das Auge vonPlatynereis dumerilii (Polychaeta). Sein Feinbau im ontogenetischen und adaptiven Wandel. Z. Zellforsch.71, 217–244 (1966).\nGilpin-Brown, J. P.: The reproduction and larval development ofNereis fucata (Savigny). J. mar. biol. Ass. U. K.38, 65–80 (1959).\nGötte, A.: Über die Entwicklung der Chaetopoden. In: Abhandlungen zur Entwicklungsgeschichte der Tiere, H. 1. Leipzig: Voss 1882.\nHauenschild, C., Fischer, A.:Platynereis dumerilii. Mikroskopische Anatomie, Fortpflanzung, Entwicklung. In: Großes Zoologisches Praktikum, H. 10b. Stuttgart: Gustav Fischer 1969.\nHempelmann, F.: Zur Naturgeschichte vonNereis dumerilii. Zoologica (Stuttg.)25, 1–135 (1911).\nMatsumoto, J.: Studies on the fine structure and cytochemical properties of erythrophores in swordtail,Xiphophorus helleri, with special reference to their pigment granules (pterinosomes). J. Cell Biol.27, 493–504 (1965).\nObika, M., Matsumoto, J.: Morphological and biochemical studies on amphibian bright-colored cells and their pterinosomes. Exp. Cell Res.52, 646–659 (1968).\nPettibone, M. H.: Marine polychaete worms of the New England Region. I.Aphroditidae throughTrochochaetidae. U. S. Nat. Mus. Bull.227, 1–356 (1963).\nSalensky, W.: Etudes sur le développement des annélides. II.Nereis cultrifera. Arch. Biol. (Liège)3, 561–604 (1882).\nViscontini, M., Hummel, W., Fischer, A.: Pigmente von Nereiden (Annelida, Polychaeten). I., vorl. Mitt. Isolierung von Pterindimeren aus den Augen vonPlatynereis dumerilii (Audouin & Milne Edwards) 1833. Helv. chim. Acta53, 1207–1209 (1970).\nWilson, E. B.: The cell-lineage ofNereis. J. 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