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Journal of Medicine and Pharmacy","Tạp chí Y Dược học Cần Thơ",{"EN":487,"VI":488},"\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">04\u002F10\u002F2015 Ministry of Information and Communications allowed Can Tho journal of medicine and pharmacy to operate (102 \u002FGP-BTTTT)\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">07\u002F16\u002F2015 Can Tho journal of medicine and pharmacy is internationally recognized: ISSN 2354-1210\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">In 2016, The journal has been included in the list of medical science journals by The State Council for professorship which is awarded a work score of 0-0.5 points for a published article.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Can Tho Journal of Medicine and Pharmacy welcome original works that haven’t been submitted or published in other medical journals. Posts must contain content related to one of the journal’s categories.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">The content published\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">The journal is divided into 3 categories:\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">- Scientific research article: are valuable scientific works, which have been researched and accepted.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">- Overview of medicine, biology and pharmacy: serving the objective of continuing training in the fields of medicine, biology and pharmacy; to systematize classical and modern knowledge.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">- Update information on new knowledge about medicine, biology, pharmacy in the country and in the world.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Scope\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">- Publication and introduction of scientific research in the fields:\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">+ Medicine (internal medicine, surgery, pediatrics, obstetrics and gynecology, odonto-stomatology, laboratory, oncology, traditional medicine, nursing).\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">+ Biology (genetics, biotechnology).\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">+ Pharmacology (pharmaceutics, drug quality analysis-control, synthetic pharmaceutical chemistry, biochemistry, pharmacognosy, botany, clinical pharmacy).\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">- To enhance the quality of undergraduate, postgraduate education, scientifically researching and meet the necessary treatment in hospital.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">- Introducing the updated domestic and oversea information about science technology to promote scientific research and exchanging technology in local, other universities.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">- Exchanging pharmaceutical and medical information for social health developing in the Mekong Delta and Vietnam.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">The object\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Postgraduate students, student of Can Tho University of Medicine and Pharmacy, scientists from schools, research institutes, hospitals, health centers, pharmaceutical companies of the Mekong Delta; other provinces and regions in Vietnam and other country.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Address\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Headquarters of Can Tho Journal of Medicine and Pharmacy, located Scientific Research and International Cooperation Office: 179 Nguyen Van Cu Street, An Khanh Ward, Ninh Kieu District, Can Tho City, Vietnam.\u003C\u002Fspan>\u003C\u002Fp>","\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Ngày 16\u002F7\u002F2015, Tạp chí Y Dược học Cần Thơ được cấp chỉ số quốc tế: ISSN 2354-1210.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Từ tháng 4\u002F2016, Tạp chí đã được Hội đồng Giáo sư ngành Y đưa vào danh sách các tạp chí khoa học Y học được tính điểm công trình 0-0,5 điểm cho một bài báo đăng.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Năm 2020 Tạp chí Y Dược học Cần Thơ đã được phê duyệt vào danh mục của các Hội đồng Giáo sư ngành Dược học được tính điểm công trình 0-0,5 điểm cho một bài báo đăng.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tạp chí Y Dược học Cần Thơ ra 12 số\u002Fnăm, 180-200 trang\u002Fsố.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Từ tháng 12\u002F2022 Tạp chí Y Dược học Cần Thơ là thành viên của hệ thống Crossref và từ tháng 01\u002F2023 tạp chí thực hiện bình duyệt online kín 2 chiều nhằm tăng tính minh bạch, tin cậy của các công trình nghiên cứu khoa học và đảm bảo tốt nhất chất lượng khoa học của bài viết.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tôn chỉ, mục đích và phạm vi của tạp chí\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tôn chỉ và mục đích hoạt động của tạp chí: xuất bản nhằm mục đích phổ biến kết quả từ các đề tài nghiên cứu khoa học; giao lưu trao đổi khoa học, chia sẻ kinh nghiệm, học tập, đồng thời cập nhật thông tin khoa học mới trong các lĩnh vực y, sinh, dược học trong và ngoài nước.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Phạm vi của tạp chí: Tạp chí xuất bản được chia thành 3 chuyên mục: (i) Bài báo nghiên cứu khoa học là kết quả công trình nghiên cứu khoa học có giá trị đã được triển khai nghiên cứu, (ii) Bài tổng quan y, sinh, dược học: phục vụ mục tiêu đào tạo liên tục trong lĩnh vực y, sinh, dược học; nhằm hệ thống hóa những kiến thức kinh điển và hiện đại; (iii) Thông tin cập nhật kiến thức mới về y, sinh, dược học trong nước và trên thế giới.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Chính sách truy cập mở\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tạp chí Y Dược học Cần Thơ áp dụng chính sách truy cập mở đối với các bài báo đã xuất bản đến với độc giả, nhằm mở rộng cơ hội tiếp cận các kết quả nghiên cứu chất lượng cao và tăng cường trao đổi kiến thức. Tạp chí đăng tải trực tuyến (miễn phí) toàn văn các bài báo được công bố trên website của Tạp chí (https:\u002F\u002Ftapchi.ctump.edu.vn).\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Đạo đức xuất bản\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tạp chí Y Dược học Cần Thơ cam kết tuân thủ đạo đức xuất bản phù hợp với các hướng dẫn và tiêu chuẩn của the Committee on Publication Ethics (COPE), tuân thủ các nguyên tắc của COPE’s Core Practices, Best Practices Guidelines for Journal Editors và Guidelines on Good Publication Practices.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Bản thảo bài báo chỉ được chấp nhận khi được tác giả chịu trách nhiệm chính cam kết các nội dung sau: Các nội dung của bản thảo chưa được đăng tải toàn bộ hoặc một phần ở các tạp chí khác; Tất cả các tác giả đều có đóng góp một cách đáng kể vào quá trình nghiên cứu hoặc chuẩn bị bản thảo và cùng chịu trách nhiệm về các nội dung của bản thảo; Tuân thủ các biện pháp đảm bảo đạo đức nghiên cứu (ví dụ thỏa thuận đồng ý tham gia nghiên cứu).\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Cam kết bảo mật\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tạp chí cam kết thực hiện và tuân thủ các quy định của luật và các văn bản hướng dẫn liên quan đến bảo mật thông tin cá nhân trên không gian mạng. Các thông tin mà người dùng (tác giả, độc giả, biên tập viên, người phản biện) nhập vào các biểu mẫu trên Hệ thống Quản lý xuất bản trực tuyến của tạp chí chỉ được sử dụng vào các mục đích đã được tuyên bố rõ ràng và sẽ không được cung cấp cho bất kỳ bên thứ ba nào khác, hay dùng vào bất kỳ mục đích nào khác.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Phí gửi bài\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Lệ phí gửi đăng bài: 1.000.000đ\u002Fbài báo\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Lệ phí gửi đăng nhanh: 1.500.000đ\u002Fbài báo\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Đối với tác giả là cán bộ viên chức thuộc Trường Đại học Y Dược Cần Thơ thì được hỗ trợ 50% lệ phí gửi đăng bài.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Đối với sinh viên thực hiện đề tài nghiên cứu khoa học cấp trường được hỗ trợ 100% lệ phí đăng bài ( Tác giả gửi đính kèm “ Quyết định về việc giao tổ chức thực hiện đề tài nghiên cứu khoa học cấp Trường của sinh viên”).\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Hình thức nộp lệ phí:\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">1. Tiền mặt:\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Nộp trực tiếp tại Phòng Tài chính - Kế toán, Trường Đại học Y Dược Cần Thơ, số 179 Nguyễn Văn Cừ, P. An Khánh, Q. Ninh Kiều, thành phố Cần Thơ.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">2. Chuyển khoản:\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tên Tài khoản: Trường ĐHYD Cần Thơ, Số TK: 0111000115668, tại ngân hàng Vietcombank chi nhánh Cần Thơ.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Thời gian: Áp dụng từ ngày 01\u002F02\u002F2023.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">* Phí gửi bài không được hoàn trả khi bài viết bị từ chối hoặc tác giả xin rút bài viết.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Quy trình phản biện bài báo\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tạp chí Y Dược học Cần Thơ thực hiện quy trình phản biện kín hai chiều nghiêm ngặt. Danh tính của những người phản biện không được tiết lộ cho các tác giả và ngược lại. Quy trình thẩm định bài báo đăng gồm các bước sau:\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tiếp nhận bản thảo\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Tác giả liên hệ gửi bản thảo đến Tạp chí qua hệ thống trực tuyến tại website: https:\u002F\u002Ftapchi.ctump.edu.vn. Hướng dẫn về cách đăng ký, gửi bài và chuẩn bị bản thảo được cung cấp trên website của Tạp chí.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Sàng lọc sơ bộ\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Sau khi Tòa soạn nhận được bài báo của tác giả, Ban Thư ký sẽ tiến hành kiểm tra sơ bộ bài báo (các yêu cầu về nội dung và hình thức). Những bài báo không đúng quy cách hoặc có nội dung không phù hợp hoặc vi phạm bản quyền sẽ bị từ chối (Ban Thư ký thông báo phản hồi đến tác giả trong vòng 1 tuần). Những bài báo đủ điều kiện, được Ban Thư ký tòa soạn chuyển đến Ban Biên tập có cùng chuyên môn với nội dung bài báo để đề xuất người phản biện. Thời gian kể từ khi Ban Biên tập nhận bài báo đến khi đề xuất người phản biện bài báo chậm nhất là 5 ngày.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Vòng phản biện\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">1. Ban Thư ký gửi bài và yêu cầu phản biện đến 02 phản biện độc lập.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">2. Các phản biện gởi nhận xét cho Ban Thư ký. Thời gian từ khi gửi bài cho phản biện đến khi nhận ý kiến của phản biện tối đa là 20 ngày.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Xử ký kết quả phản biện\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">1. Nếu ý kiến đồng ý cho đăng và không cần chỉnh sửa, Ban Thư ký tiếp tục đăng bài theo qui trình.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">2. Nếu ý kiến đồng ý đăng và cần chỉnh sửa, Ban Thư ký sẽ thông tin đến tác giả chỉnh sửa theo yêu cầu của người phản biện. Thời gian chỉnh sửa và gửi lại kéo dài không quá 2 tuần, từ khi tác giả bài báo nhận được thông tin (Quá trình này có thể lặp lại tối đa 2 lần\u002F1 bài báo). Khi có sự thống nhất, đồng ý của người phản biện; bài báo được tiếp tục đăng theo qui trình.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">3. Những bài báo có chất lượng không đạt yêu cầu, cả 2 phản biện không đồng ý cho đăng sẽ bị Tòa soạn từ chối đăng.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">Xuất bản\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">1. Ban Thư ký tổng hợp các bản thảo đã được tác giả hoàn thiện sau thẩm định trình Ban Biên tập xem xét, Tổng Biên tập phê duyệt, quyết định bài đăng theo các tiêu chí: sự phù hợp nội dung với tôn chỉ và mục đích, thể loại bài viết (ưu tiên các bài có bài có nghiên cứu chuyên sâu, hàm lượng khoa học cao), đóng góp mới bài báo, bài báo được ưu tiên đăng trong số gần nhất của Tạp chí theo thứ tự: tính thời sự, chất lượng bài báo và thời gian gửi bài.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">2. Ban Biên tập và Ban Thư ký biên tập bản thảo, chế bản, đọc rà soát lỗi. Thời gian hoàn thành từ 10-15 ngày.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">3. Ban Thư ký có trách nhiệm thông báo cho tác giả bài báo (bằng e-mail) về tình hình phê duyệt bài báo, thời gian, số kỳ, tập xuất bản bài báo theo qui định.\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>\u003Cp>\u003Cspan style=\"color: rgb(0, 0, 0);\">4. Danh sách bài báo theo số Tạp chí được in ấn và phát hành trong năm định kỳ được công bố chính thức trên website: https:\u002F\u002Ftapchi.ctump.edu.vn\u003C\u002Fspan>\u003C\u002Fp>\u003Cp>\u003Cbr>\u003C\u002Fp>",{"VOID":490},"wcQ1uqwAAAAJ","2023-05-30T08:17:21.868+00:00",[],[494],{"id":495,"createTime":28,"updateTime":28,"relativeEntities":496,"slug":28,"properties":497,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":507,"parentIds":508,"statistic":28},"6413896b-eca9-442b-a73f-182a58a0ce40",[],{"title":498,"address":501,"country":504,"abbreviation":505},{"EN":499,"VI":500},"Can Tho University of Medicine and Pharmacy","Trường Đại học Y Dược Cần Thơ",{"EN":502,"VI":503},"No 179, Nguyen Van Cu street, An Khanh ward, Ninh Kieu district, Can Tho city, Vietnam","Số 179, đường Nguyễn Văn Cừ, phường An Khánh, quận Ninh Kiều, thành phố Cần Thơ, Việt Nam",{"VOID":15},{"VOID":506},"ctump","http:\u002F\u002Fwww.ctump.edu.vn\u002F",[],[],"https:\u002F\u002Ftapchi.ctump.edu.vn\u002Findex.php\u002Fctump",{"impactFactor":32,"impactFactorByYear":512,"i10Index":32,"i10IndexLast5Year":32,"totalPublication":514,"totalPublicationByYear":515,"totalCitation":520,"totalCitationByYear":521,"totalCitationPerPublication":108,"totalCitationPerPublicationByYear":523,"hindexLast5Year":45,"hindex":45},{"2022":513,"2023":111,"2024":106},0.01,1556,{"2020":47,"2021":516,"2022":517,"2023":518,"2024":519,"2025":122},57,306,801,358,161,{"2021":146,"2022":280,"2023":522},99,{"2021":524,"2022":318,"2023":104},0.23,{"impactFactor":28,"impactFactorByYear":28,"i10Index":123,"i10IndexLast5Year":123,"totalPublication":526,"totalPublicationByYear":527,"totalCitation":526,"totalCitationByYear":528,"totalCitationPerPublication":40,"totalCitationPerPublicationByYear":531,"hindexLast5Year":49,"hindex":49},476,{"0":205,"2019":123,"2021":139,"2022":459,"2023":451,"2024":357,"2025":49,"2026":48},{"2021":42,"2022":123,"2023":161,"2024":529,"2025":360,"2026":530},136,83,{"2021":105,"2022":513,"2023":532,"2024":127,"2025":533,"2026":534},0.62,25.43,13.83,{"id":536,"createTime":537,"updateTime":382,"relativeEntities":538,"slug":539,"properties":540,"entityType":25,"verifyStatus":26,"verifyTime":28,"verifyNote":28,"languages":552,"translateLanguages":28,"viewCount":133,"subjectFields":553,"manageAffiliations":554,"indexDatabases":555,"url":556,"thumbnailPath":557,"statistic":558,"gsStatistic":594,"type":55,"analyzePriority":28},"6984a56a-db70-403b-9cc4-4013e1ceaffa","2023-05-09T06:47:40.346+00:00",[],"T%E1%BA%A1p%20ch%C3%AD%20Nghi%C3%AAn%20c%E1%BB%A9u%20n%C6%B0%E1%BB%9Bc%20ngo%C3%A0i",{"country":541,"issn":542,"title":544,"introduce":547,"gsId":550},{"VOID":15},{"VOID":543},"25252445",{"EN":545,"VI":546},"VNU Journal of Foreign Studies","Tạp chí Nghiên cứu nước ngoài",{"EN":548,"VI":549},"{\"ops\":[{\"insert\":\"\\n\\nThe \\n\"},{\"attributes\":{\"italic\":true},\"insert\":\"VNU Journal of Science\"},{\"insert\":\"\\n was established in 1985 for the publication of national and international research papers in all fields of natural sciences and technology, social sciences and humanities. 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(Ann Microbiol 67:655–668, 2017). In this work, we analyzed the impact of P. putida GAP-P45 on proline metabolic enzyme activity, accumulation of reactive oxygen species (ROS), and the activities of antioxidant enzymes under ambient as well as water-stressed conditions. We observed that inoculation of A. thaliana with P. putida GAP-P45 under water-stressed conditions modulated the proline metabolic enzyme activity similar to the proline metabolic genes as reported earlier by Ghosh et al. (Ann Microbiol 67:655–668, 2017). These results point towards transcriptional regulation of proline metabolism in the particular treatments reported here. In this paper, we also report the impact of P. putida GAP-P45 on the redox status of A. thaliana seedlings under the same experimental conditions. To accomplish this objective, the levels of ROS (superoxide radicals and H2O2) and the activities of enzymatic antioxidants (superoxide dismutase, peroxidase, catalase, glutathione reductase, and ascorbate peroxidase) were assayed. While all the redox molecules (ROS and enzymatic antioxidants) recorded highest levels under water stress, inoculation with P. putida GAP-P45 decreased ROS accumulation and significantly lowered the activities of all antioxidant enzymes in A. thaliana seedlings across most time points of analysis under water deficit conditions. These results positively correlated with the P. putida GAP-P45-associated drought-tolerant phenotype observed in A. thaliana seedlings under water-stressed conditions as reported by Ghosh et al. (Ann Microbiol 67:655–668, 2017).",{"EN":952},"Drought-mitigating Pseudomonas putida GAP-P45 modulates proline turnover and oxidative status in Arabidopsis thaliana under water stress",{"VOID":954},"Aebi H (1984) Catalase in vitro. 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J Bacteriol 197:431–440. https:\u002F\u002Fdoi.org\u002F10.1128\u002FJB.02282-14\nZlatev Z, Lidon FC (2012) An overview on drought induced changes in plant growth, water relations and photosynthesis. 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aim of this study was to explore the potential of indigenous strains ofLactobacillus delbrueckii subsp,bulgaricus andStreptococcus thermophilus as yoghurt starter culture, for this purpose some important technological properties were studied. The strains ofLactobacillus delbrueckii subsp.bulgaricus Lb5, Lb7, andStreptococcus thermophilus St4 and St7, produced more than 0.7% acidity after 6h of incubation in skim milk media. The acetaldehyde was detected as major aroma compound produced by mixed culture M1 (Lb5∶St4) i.e., 19.95 ppm at 43°C. Yoghurt was prepared with different combinations of the culture and sensory analysis performed by a trained panel revealed that pleasant yoghurt was prepared with mixed culture ofLactobacillus delbrueckii subsp.bulgaricus Lb5 andS. thermophilus St4. The results suggested that these strains have potential to be used as starters for yoghurt production.",{"EN":1066},"Selection of yoghurt starter culture from indigenous isolates ofStreptococcus thermophilus andLactobacillus delbrueckii subsp.bulgaricus on the basis of technological properties",{"VOID":1068},"Abdelgadir W.S., Hamad S.H., Moller P.L., Jakobsen M. (2001). 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Dairy Sci., 31: 23–41.\nHerrero M., Mayo B., Gonzales B., Suarez J. E. (1996). Evaluation of technologically important traits in lactic acid bacteria isolated from spontaneous fermentations. J. Appl. Bacteriol., 8: 565–570.\nKneifel W., Ulberth F., Erhard F., Jaros D. (1992). Aroma profiles and sensory properties of yoghurt and yoghurt-related products I. Screening of commercially available starter cultures. Milchwissenschaft, 47: 362–365.\nMasud T., Sultana K., Shah M. A. (1991). Incidence of lactic acid bacteria isolated from indigenous dahi. Australasian J. Anim. Sci., 4: 329–331.\nOtt A., Fay L.B., Chaintreau A. (1997). Determination and origin of the aroma impact compounds of yogurt flavor. J. Agri. Food Chem., 45: 850–858.\nOtt A., Germond J.E., Baumgartner M., Chaintreau A. (1999). Aroma comparisons of traditional and mild yoghurts: Headspace gas chromatography quantification of volatiles and origin of α-di ketons. J. Agr. Food Chem., 47: 2379–2385.\nRaquib M., Trishna B., Choudhary R.K., Rahaman H., Borpuzari T. (2003). Isolation and characterization of lactobacilli isolated from market sample of sour dahi. Ind. Vet. J., 80: 791–794.\nTamime A.Y., Deeth H.C. (1980). Yoghurt: technology and biochemistry. J. Food Protect., 43: 939–977.\nWarsy J.D. (1983). Production of volatile aroma compounds in dahi. J. Agr. Res., 21: 31–36.\nWouters J.T.M., Ayad E.H.E., Hugenholtz J., Smit G. (2002). Microbes from raw milk for fermented dairy products. Int. Dairy J., 12: 91–109.\nXanthopoulos V., Petridis D., Tzanetakis N. (2001). Characterization and classification ofStreptococcus thermophilus andLactobacillus delbrueckii subsp.bulgaricus strains isolated from traditional Greek yogurts. J. Food Sci., 66: 747–752.",{"VOID":1070},"10.1007\u002FBF03179447","https:\u002F\u002Flink.springer.com\u002Farticle\u002F10.1007\u002FBF03179447",[1073,1088],{"id":1074,"sortIndex":32,"researcher":28,"roles":1075,"affiliations":1076,"properties":1085,"displayName":1087,"givenName":28,"familyName":28},"0e4f9f7c-c06a-47ff-8020-6d9aeb89a23a",[965],[1077],{"id":1078,"sortIndex":32,"affiliation":1079,"properties":28},"74e37438-3e23-45e9-afd2-08d5d557fe46",{"id":1078,"createTime":28,"updateTime":28,"relativeEntities":1080,"slug":28,"properties":1081,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1084,"statistic":28},[],{"title":1082},{"VI":1083},"Department of Dairy Technology, Sindh Agriculture University, Tandojam, Pakistan",[],{"title":1086},{"VI":1087},"Aijaz Hussain Soomro",{"id":1089,"sortIndex":40,"researcher":28,"roles":1090,"affiliations":1091,"properties":1100,"displayName":1102,"givenName":28,"familyName":28},"7b54c03e-0c4b-48c3-9b60-6a27ddb1891c",[965],[1092],{"id":1093,"sortIndex":32,"affiliation":1094,"properties":28},"edab8f0e-d468-4611-bd89-786ae5b1d0b2",{"id":1093,"createTime":28,"updateTime":28,"relativeEntities":1095,"slug":28,"properties":1096,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1099,"statistic":28},[],{"title":1097},{"VI":1098},"Department of Food Technology, University of Arid Agriculture, Rawalpindi, Pakistan",[],{"title":1101},{"VI":1102},"Tariq Masud",{"url":1071,"publisher":1104,"properties":1145},{"id":868,"createTime":869,"updateTime":870,"relativeEntities":1105,"slug":872,"properties":1106,"entityType":25,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":32,"subjectFields":1109,"manageAffiliations":1114,"indexDatabases":1125,"url":932,"thumbnailPath":28,"statistic":1140,"gsStatistic":28,"type":55,"analyzePriority":28},[],{"issn":1107,"title":1108},{"VOID":875},{"EN":877},[1110],{"id":881,"createTime":28,"updateTime":28,"relativeEntities":1111,"label":1112,"description":1113,"parentId":28,"standard":28,"scholarHubFieldId":28},[],{"EN":884},{},[1115,1120],{"id":888,"createTime":28,"updateTime":28,"relativeEntities":1116,"slug":28,"properties":1117,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1119,"statistic":28},[],{"title":1118},{"EN":892},[],{"id":895,"createTime":28,"updateTime":28,"relativeEntities":1121,"slug":28,"properties":1122,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1124,"statistic":28},[],{"title":1123},{"EN":899},[901],[1126,1133],{"id":904,"indexDatabase":1127,"url":910,"indexYears":911,"academicFieldIds":1132,"indexDatabaseRanking":914},{"id":775,"createTime":28,"updateTime":28,"relativeEntities":1128,"label":1129,"description":1130,"key":781,"publicationTags":1131,"standard":28},[],{"EN":778,"VI":778},{"EN":778,"VI":780},[783],[913],{"id":916,"indexDatabase":1134,"url":928,"indexYears":28,"academicFieldIds":1139,"indexDatabaseRanking":28},{"id":918,"createTime":28,"updateTime":28,"relativeEntities":1135,"label":1136,"description":1137,"key":925,"publicationTags":1138,"standard":28},[],{"EN":921,"VI":921},{"EN":923,"VI":924},[927,813],[930,931],{"impactFactor":32,"impactFactorByYear":1141,"i10Index":32,"i10IndexLast5Year":32,"totalPublication":40,"totalPublicationByYear":1142,"totalCitation":32,"totalCitationByYear":1143,"totalCitationPerPublication":32,"totalCitationPerPublicationByYear":1144,"hindexLast5Year":32,"hindex":32},{},{"2023":40},{},{},{"pages":1146,"volume":1148},{"VOID":1147},"67-71",{"VOID":1149},"58","2008-03-01",2008,[914,927],{"id":1154,"createTime":1155,"updateTime":1156,"relativeEntities":1157,"slug":1158,"properties":1159,"entityType":957,"verifyStatus":26,"verifyTime":1156,"verifyNote":959,"languages":28,"translateLanguages":28,"viewCount":32,"primaryUrl":1168,"fullTextUrl":28,"authors":1169,"publicationType":1004,"publisherRelationship":1211,"citationCount":28,"citationInfo":28,"publishDate":1258,"publishYear":1259,"citationAnalyzeStatus":878,"lastCitationAnalyze":28,"indexDatabases":1260,"openAccess":28,"references":28,"isForceReanalyzing":1055},"00672a14-d74c-43e5-a94f-6d9a522358ea","2024-02-09T04:35:54.669+00:00","2025-02-07T03:18:20.136+00:00",[],"Predominance-of-Bacillus-sp-in-soil-samples-of-the-southern-regions-of-Western-Ghats-India",{"abstract":1160,"title":1162,"references":1164,"doi":1166},{"EN":1161},"The aim of this study was to determine the bacterial diversity in soils of the southern region of the Western Ghats, a ‘biodiversity hotspot’, and thereby futher our understanding of the microbial communities in this ecological niche. The diversity and phylogeny of bacterial populations in soil samples collected from various locations of the Tamil Nadu and Kerala regions of Western Ghats were compared using both cultivation-dependent and cultivation-independent methods. A total of 171 bacterial strains were isolated based on their morphological characteristics and their diversity indices calculated. The distinctive amplified ribosomal DNA restriction analysis (ARDRA) pattern of each isolate was determined, and representative isolates were then subjected to 16S rRNA gene sequencing. On the basis of their sequence similarity, the isolates were distributed among three different genera belonging to Firmicutes (83.3 %), Proteobacteria (8.3 %) and high G+C Gram-positive bacteria (8.3 %). The highest and the lowest values for the diversity indices were obtained for metagenomic DNA extracted from isolates BWGA and BVP, respectively; these were used for 16S rRNA gene library construction and analysis. Based on their phylogenetic analysis, the predominant members of the habitat were found to belong to the phylum Firmicutes (84.62 %). Firmicutes was the dominant bacterial phylum detected by both approaches, but the culture-independent approach detected a considerably higher number of uncultivable bacteria. In conclusion, in our study of the bacterial diversity of this Western Ghats region, we fund that the genus Bacillus was predominant among the samples assessed by both cultivation-dependent and cultivation-independent methods.",{"EN":1163},"Predominance of Bacillus sp. in soil samples of the southern regions of Western Ghats, India",{"VOID":1165},"Ahmad N, Johri S, Abdin M, Qazi G (2009) Molecular characterization of bacterial population in the forest soil of Kashmir, India. World J Microbiol Biotechnol 25(1):107–113. doi:10.1007\u002Fs11274-008-9868-2\nAmann RI (1995) In situ identification of microorganisms by whole cell hybridization with rRNA-targeted nucleic acid probes. In: Akkermans ADL, van Elsas JD, de Bruijn FJ (eds) Molecular microbial ecology manual. Kluwer Academic Publishers, Dordrecht\nAmann RI, Ludwig W, Schleifer KH (1995a) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59(1):143–169\nAmann RI, Ludwig W, Schleifer KH (1995b) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol J Rev 59:143–169\nAusubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (1987) Current protocols in molecular biology. John Wiley & Sons, New York\nBawa K, Joseph G, Setty S (2007) Poverty, biodiversity and institutions in forest-agriculture ecotones in the Western Ghats and Eastern Himalaya ranges of India. Agric Ecosyst Environ 121(3):287–295\nBianchi MAG, Armand JMB (1982) Statistical sampling of bacterial strains and its use in bacterial diversity measurement. Microb Ecol 8(1):61–69\nBurmølle M, Johnsen K, Al-Soud WA, Hansen LH, Sørensen SJ (2009) The presence of embedded bacterial pure cultures in agar plates stimulate the culturability of soil bacteria. J Microbiol Meth 79(2):166–173. doi:10.1016\u002Fj.mimet.2009.08.006\nCho JC, Kim SJ (2000) Increase in bacterial community diversity in subsurface aquifers receiving livestock wastewater input. Appl Environ Microbiol 66(3):956–965. doi:10.1128\u002Faem.66.3.956-965.2000\nDunbar J, Ticknor LO, Kuske CR (2000) Assessment of microbial diversity in four Southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis. Appl Environ Microbiol 66(7):2943–2950. doi:10.1128\u002Faem.66.7.2943-2950.2000\nFelske ADM, Heyrman A, Balcaen A, de Vos P (2003) Multiplex PCR screening of soil isolates for novel Bacillus-related lineages. J Microbiol Meth 55:447–458\nHackl E, Zechmeister BS, Bodrossy L, Sessitsch A (2004) Comparison of diversities and compositions of bacterial populations inhabiting natural forest soils. Appl Environ Microbiol 70:5057–5065. doi:10.1128\u002FAEM.70.9.5057-5065.2004\nHugenholtz P, Goebel BM, Pace NR (1998) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diverity. J Bacteriol 180:4765–4774\nLane DJ, Pace B, Olsen GJ, Stahl DA, Sogin ML, Pace NR (1985) Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc Natl Acad Sci USA 82(20):6955–6959\nMcCaig AE, Glover LA, Prosser JI (1999) Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures. Appl Environ Microbiol 65(4):1721–1730\nMcCaig AE, Grayston SJ, Prosser JI, Glover LA (2001) Impact of cultivation on characterisation of species composition of soil bacterial communities. FEMS Microbiol Ecol 35(1):37–48. doi:10.1111\u002Fj.1574-6941.2001.tb00786.x\nOline DK, Schmidt SK, Grant MC (2006) Biogeography and landscape-scale diversity of the dominant Crenarchaeota of soil. Microb Ecol 52:480–490\nOravecz O, Elhottová D, Krištůfek V, Šustr V, Frouz J, Tříska J, Márialigeti K (2004) Application of ARDRA and PLFA analysis in characterizing the bacterial communities of the food, gut and excrement of Saprophagous Larvae of Penthetria holosericea (Diptera: Bibionidae): a pilot study. Folia Microbiol 49(1):83–93. doi:10.1007\u002Fbf02931652\nPace NR (1997) A molecular view of microbial diversity and the biosphere. Science 276(5313):734–740. doi:10.1126\u002Fscience.276.5313.734\nPignatelli M, Moya A, Tamames J (2009) EnvDB, a database for describing the environmental distribution of prokaryotic taxa. Environ Microbiol Rep 1(3):191–197. doi:10.1111\u002Fj.1758-2229.2009.00030.x\nRaviraja NS (2005) Fungal endophytes in five medicinal plant species from Kudremukh range, Western Ghats of India. J Basic Microbiol 45(3):230–235. doi:10.1002\u002Fjobm.200410514\nRuckmani A, Chakrabarti T (2011) Analysis of bacterial community composition of a spring water from the Western Ghats, India using culture dependent and molecular approaches. Curr Microbiol 62(1):7–15. doi:10.1007\u002Fs00284-010-9663-9\nSambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning. Cold Spring Harbor Laboratory Press, New York\nSchallmey M, Singh A, Ward OP (2004) Developments in the use of Bacillus species for industrial production. Can J Microbiol 50:1–17\nSchleifer KH (2004) Microbial diversity: facts, problems and prospects. Syst Appl Microbiol 27(1):3–9\nSmit E, Leeflang P, Wernars K (1997) Detection of shifts in microbial community structure and diversity in soil caused by copper contamination using amplified ribozomal DNA restriction analysis. FEMS Microbiol Ecol 23:249–261\nTamura K, Peterso K, Peterson N, Stecher G, Masatoshi N, Sudhir K (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 10(28):2731–2739\nUNESCO (2012) http:\u002F\u002Fwhc.unesco.org\u002Fen\u002Fdecisions\u002F4280. Accessed 12 Apr 2014\nVaz-Moreira I, Egas C, Nunes O, Manaia C (2011) Culture-dependent and culture-independent diversity surveys target different bacteria: a case study in a freshwater sample. Antonie Van Leeuwenhoek 100(2):245–257. doi:10.1007\u002Fs10482-011-9583-0\nWard DM, Bateson MM, Weller R, Ruff-Roberts AL (1992) Ribosomal RNA analysis of microorganisms as they occur in nature. Adv Microb Ecol 12:219–286\nZhang C, Zhao X, Jing Y, Chida T, Chen H, Shen S (2008) Phenotypic and biological properties of two antagonist Bacillus subtilis strains. World J Microbiol Biotechnol 24(10):2179–2181. doi:10.1007\u002Fs11274-008-9723-5\nZhou J, Bruns M, Tiedge J (1996) DNA recovery from soils of diverse compositions. Appl Environ Microbiol 62:316–322",{"VOID":1167},"10.1007\u002Fs13213-014-0876-1","https:\u002F\u002Flink.springer.com\u002Farticle\u002F10.1007\u002Fs13213-014-0876-1",[1170,1185,1198],{"id":1171,"sortIndex":32,"researcher":28,"roles":1172,"affiliations":1173,"properties":1182,"displayName":1184,"givenName":28,"familyName":28},"a72146f9-aa8c-440d-8668-a8feb639e06d",[965],[1174],{"id":1175,"sortIndex":32,"affiliation":1176,"properties":28},"8ba6dede-32bf-41db-93ac-64cf7a953b84",{"id":1175,"createTime":28,"updateTime":28,"relativeEntities":1177,"slug":28,"properties":1178,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1181,"statistic":28},[],{"title":1179},{"EN":1180},"Molecular Microbiology Laboratory, Department of Biotechnology, Bharathiar University, Coimbatore, India",[],{"title":1183},{"VI":1184},"Gowdaman Vasudevan",{"id":1186,"sortIndex":40,"researcher":28,"roles":1187,"affiliations":1188,"properties":1195,"displayName":1197,"givenName":28,"familyName":28},"5fd92555-3f62-42b0-becf-c9cb22fb8530",[965],[1189],{"id":1175,"sortIndex":32,"affiliation":1190,"properties":28},{"id":1175,"createTime":28,"updateTime":28,"relativeEntities":1191,"slug":28,"properties":1192,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1194,"statistic":28},[],{"title":1193},{"EN":1180},[],{"title":1196},{"VI":1197},"Venkatachalam Siddarthan",{"id":1199,"sortIndex":123,"researcher":28,"roles":1200,"affiliations":1201,"properties":1208,"displayName":1210,"givenName":28,"familyName":28},"b3ba9ea7-1f19-4ec5-acbe-ef641c23ad83",[965],[1202],{"id":1175,"sortIndex":32,"affiliation":1203,"properties":28},{"id":1175,"createTime":28,"updateTime":28,"relativeEntities":1204,"slug":28,"properties":1205,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1207,"statistic":28},[],{"title":1206},{"EN":1180},[],{"title":1209},{"VI":1210},"Prabagaran Solai Ramatchandirane",{"url":1168,"publisher":1212,"properties":1253},{"id":868,"createTime":869,"updateTime":870,"relativeEntities":1213,"slug":872,"properties":1214,"entityType":25,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":32,"subjectFields":1217,"manageAffiliations":1222,"indexDatabases":1233,"url":932,"thumbnailPath":28,"statistic":1248,"gsStatistic":28,"type":55,"analyzePriority":28},[],{"issn":1215,"title":1216},{"VOID":875},{"EN":877},[1218],{"id":881,"createTime":28,"updateTime":28,"relativeEntities":1219,"label":1220,"description":1221,"parentId":28,"standard":28,"scholarHubFieldId":28},[],{"EN":884},{},[1223,1228],{"id":888,"createTime":28,"updateTime":28,"relativeEntities":1224,"slug":28,"properties":1225,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1227,"statistic":28},[],{"title":1226},{"EN":892},[],{"id":895,"createTime":28,"updateTime":28,"relativeEntities":1229,"slug":28,"properties":1230,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1232,"statistic":28},[],{"title":1231},{"EN":899},[901],[1234,1241],{"id":904,"indexDatabase":1235,"url":910,"indexYears":911,"academicFieldIds":1240,"indexDatabaseRanking":914},{"id":775,"createTime":28,"updateTime":28,"relativeEntities":1236,"label":1237,"description":1238,"key":781,"publicationTags":1239,"standard":28},[],{"EN":778,"VI":778},{"EN":778,"VI":780},[783],[913],{"id":916,"indexDatabase":1242,"url":928,"indexYears":28,"academicFieldIds":1247,"indexDatabaseRanking":28},{"id":918,"createTime":28,"updateTime":28,"relativeEntities":1243,"label":1244,"description":1245,"key":925,"publicationTags":1246,"standard":28},[],{"EN":921,"VI":921},{"EN":923,"VI":924},[927,813],[930,931],{"impactFactor":32,"impactFactorByYear":1249,"i10Index":32,"i10IndexLast5Year":32,"totalPublication":40,"totalPublicationByYear":1250,"totalCitation":32,"totalCitationByYear":1251,"totalCitationPerPublication":32,"totalCitationPerPublicationByYear":1252,"hindexLast5Year":32,"hindex":32},{},{"2023":40},{},{},{"pages":1254,"volume":1256},{"VOID":1255},"431-441",{"VOID":1257},"65","2014-04-17",2014,[914,927],{"id":1262,"createTime":1263,"updateTime":1264,"relativeEntities":1265,"slug":1266,"properties":1267,"entityType":957,"verifyStatus":26,"verifyTime":1264,"verifyNote":959,"languages":28,"translateLanguages":28,"viewCount":32,"primaryUrl":1276,"fullTextUrl":28,"authors":1277,"publicationType":1004,"publisherRelationship":1370,"citationCount":28,"citationInfo":28,"publishDate":1417,"publishYear":1418,"citationAnalyzeStatus":878,"lastCitationAnalyze":28,"indexDatabases":1419,"openAccess":28,"references":28,"isForceReanalyzing":1055},"007144d8-38ed-4dc7-8dba-04dc9dbb80ce","2023-11-24T11:43:50.605+00:00","2024-12-23T01:43:52.931+00:00",[],"Effect-of-nitrogen-addition-on-the-carbon-metabolism-of-soil-microorganisms-in-a-Calamagrostis-angustifolia-wetland-of-the-Sanjiang-Plain-northeastern-China",{"abstract":1268,"title":1270,"references":1272,"doi":1274},{"EN":1269},"Soil microorganisms are important mediators of land ecosystem functions and stability. However, carbon sources in different amounts of nitrogen addition are known to affect the function of soil microbial communities. Thus, this study sought to evaluate the effects of nitrogen addition on the carbon utilization capacity of soil microorganisms in the Sanjiang Plain wetland, northeastern China. Three nitrogen treatments (CK, 0 kg N ha−1 a−1; N40, 40 kg N ha−1 a−1; and N80 kg N ha−1 a−1) were evaluated in the Honghe National Nature Reserve of the Sanjiang Plain. The carbon metabolism capacity of soil microorganisms in the C. angustifolia wetland was investigated after five consecutive year’s nitrogen addition treatment using the Bio-Eco technique. Different amounts of nitrogen addition conditions resulted in significant differences in pH, ammonium nitrogen (NH4+), dissolved organic carbon (DOC), and soil microbial alpha diversity. The average well-color development (AWCD) in the Bio-Eco Plate assay increased gradually with incubation time, and different nitrogen levels significantly affected these AWCD values (P \u003C 0.05), with the N40 treatment exhibiting the highest value. Furthermore, the N80 treatment had significantly lower Shannon and Pielou diversity indices (P \u003C 0.05). N40 significantly promoted carbohydrate, amino acid, and ester utilization rates by soil microorganisms, whereas N80 significantly inhibited carbohydrate, amino acid, alcohol, amine, and organic acids utilization. Redundancy analysis (RDA) showed that the three treatments had remarkable differences in soil microbial community metabolism, and the cumulative variance contribution was 72.86%. In addition, RDA revealed that the N80 treatment was positively correlated with the TN, SMC, DON, and TOC but negatively correlated with DOC, NH4+, pH, and NO3−. Long-term nitrogen addition leads to changes in soil microbial community structure and significantly alters the ability of soil microorganisms to utilize carbon sources in the Calamagrostis angustifolia wetland.",{"EN":1271},"Effect of nitrogen addition on the carbon metabolism of soil microorganisms in a Calamagrostis angustifolia wetland of the Sanjiang Plain, northeastern China",{"VOID":1273},"Bragazza L, Buttler A, Habermacher J, Brancaleoni L, Gerdol R, Fritze H, Hanajík P, Laiho R, Johnson D (2012) High nitrogen deposition alters the decomposition of bog plant litter and reduces carbon accumulation. Glob Chang Biol 18(3):1163–1172\nChakraborty A, Chakrabarti K, Chakraborty A, Ghosh S (2011) Effect of long-term fertilizers and manure application on microbial biomass and microbial activity of a tropical agricultural soil. Biol Fertil Soils 47(2):227–233\nCompton J E, Watruda L S, Porteousa L A, DeGrood S (2004) Response of soil microbial biomass and community composition to chronic nitrogen additions at Harvard forest. For Ecol Manage 196(1):143 -158.\nDeforest J (2004) Atmospheric nitrate deposition and the microbial degradation of cellobiose and vanillin in a northern hardwood forest. Soil Biol Biochem 36(6):965–971\nDiao C, Lu XK, Tian J, Zhang YQ, Mo JM, Yu GR (2019) Effects of long-term nitrogen addition on the metabolic diversity of microbial carbon sources in subtropical forest soils. Acta Eco Sini 39(18):6622–6630\nDise NB, Stevens J (2005) Nitrogen deposition and reduction of terrestrial biodiversity: evidence from temperate grasslands. Sci China C Life Sci 48:720–728\nFang HJ, Cheng SL, Yu R, Xu MJ, Wang YS, Li LS, Dang XS, Wang L, Li YN (2014) Experimental nitrogen deposition alters the quantity and quality of soil dissolved organic carbon in an alpine meadow on the Qinghai-Tibetan Plateau. Appl Soil Ecol 81:1–11\nFeng HF, Lin WQ, Xue L (2021) Interactive effects of nitrogen and phosphorus additions and different stand densities on soil microbial functional diversity of Acacia auriculiformis stands. Acta Eco Sini 41(6):2305–2314\nFeng ZZ, Rütting T, Pleijel H, Wallin G, Reich PB, Kammann CI, Newton PCD, Kobayashi K, Luo YJ, Uddling J (2015) Constraints to nitrogen acquisition of terrestrial plants under elevated CO2. Glob Chang Biol 21(8):3152–3168\nFierer N, Jackson RB (2006) The diversity and biogeography of soil bacterial communities. P Natl Acad Sci USA 103:626–631\nFrancez AJ, Pinay G, Josselin N, Williams BL (2011) Denitrification triggered by nitrogen addition in Sphagnum magellanicum peat. Biogeochemistry 106:435–441\nFrey SD, Knorr M, Parrent JL, Simpson RT (2004) Chronic nitrogen enrichment affects the structure and function of the soil microbial community in temperate hardwood and pine forests. Forest Ecol Manag 196(1):159–171\nGarland JL (1997) Analysis and interpretation of community-level physiological profiles in microbial ecology. FEMS Microbioly Ecol 24(4):289–300\nGarland JL, Mills AL (1991) Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization. Appl Environ Microbiol 57(8):2351–2359\nGrandy AS, Strickland MS, Lauber CL, Bradford MA, Fierer N (2009) The influence of microbial communities, management, and soil texture on soil organic matter chemistry. Geoderma 150(3-4):278–286\nHe JZ, Li J, Zhen YM (2013a) Thoughts on the microbial diversity-stability relationship in soil ecosystems. Biodivers Sci 21(4):412–421\nHe YT, Qi YC, Dong YS, Xiao SS, Peng Q, Liu XC, Sun LJ (2013b) Effects of nitrogen fertilization on soil microbial biomass and community functional diversity in temperate grassland in Inner Mongolia, China. Clean-Soil Air Water 41(12):1216–1221\nHu Y, Peuke AD, Zhao X, Yan J, Li C (2019) Effects of simulated atmospheric nitrogen deposition on foliar chemistry and physiology of hybrid poplar seedlings. Plant Physiol Biochem 143:94–108\nJin Z, Ji FY, Xu X, Xu XY, Chen QK, Li Q (2014) Microbial and metabolic characterization of a denitrifying phosphorus-uptake\u002Fside stream phosphorus removal system for treating domestic sewage. Biodegradation 25(6):777–786\nJones DL, Willett VB (2005) Experimental evaluation of methods to quantify dissolved organic nitrogen (DON) and dissolved organic carbon (DOC) in soil. Soil Biol Biochem 38(5):991–999\nKonopka A, Oliver L, Turco RF Jr (1998) The use of carbon substrate utilization patterns in environmental and ecological microbiology. Microb Ecol 35(2):103–115\nLi FL, Liu M, Li ZP, Jiang CY, Han FX, Che YP (2013) Changes in soil microbial biomass and functional diversity with a nitrogen gradient in soil columns. 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Microbiota and probiotics within the cellular vicinity may serve such critical stimuli that can bring out different epigenetic mediated host responses. The aim of present study was to explore the changes in epigenetic signatures of Caco-2 cells by probiotic strains (Lactobacillus rhamnosus MTCC 5897: LR, Lactobacillus fermentum MTCC 5898: LF and their mixture: RF), respectively, or during challenge with Escherichia coli (ATCC 14948) using exclusion, competition and displacement assays. Adenocarcinoma intestinal epithelial Caco-2 cells were treated with LR, LF, RF and E. coli for 6 h, respectively. Caco-2 cells were also challenged with E. coli and probiotic lactobacilli during exclusion, competition and displacement assays. Finally, global epigenetic modifications by acetylation of H4 and H3 histone proteins and DNA methylation patterns were determined. Probiotic-treated Caco-2 cells displayed significant (p \u003C 0.01) reduction in percent global H4 and H3 acetylation, respectively, in contrast to their elevated (p \u003C 0.05) levels after E. coli infection. On the other hand, a remarkable (p \u003C 0.01) decrease in percent H4 and H3 acetylation were observed when E. coli were excluded, competed or displaced by lactobacilli strains. No changes in the global DNA methylation patterns were observed in Caco-2 cells after exposure to probiotic strains or E. coli, respectively, but surprisingly, their levels increased significantly (p \u003C 0.05) when lactobacilli-treated cells were challenged with E. coli during exclusion or competition than displacement assays. Probiotic L. rhamnosus and L. fermentum modulated the host epigenetic signatures via global histone acetylation individually or during E. coli challenge by exclusion, competition and displacement assays. Whilst on the other hand changes in global DNA methylation patterns were obtained significantly during probiotic treatment with E. coli in exclusion and competition protocols.",{"EN":1573},"Probiotic lactobacilli mediated changes in global epigenetic signatures of human intestinal epithelial cells during Escherichia coli challenge",{"VOID":1575},"Al Akeel R (2013) Role of epigenetic reprogramming of host genes in bacterial pathogenesis. Saudi J Biol Sci 20:305–309\nAlenghat T, Artis D (2014) Epigenomic regulation of host–microbiota interactions. Trends Immunol 35:518–525\nAndrade-Oliveira V, Amanom MT, Correa-Costa M, Castoldi A, Felizardo RJ, de Almeida DC, Bassi EJ, Moraes-Vieira PM, Hiyane MI, Rodas AC, Peron JP (2015) Gut bacteria products prevent AKI induced by ischemia-reperfusion. J Am Soc Nephrol 26:1877–1888\nBhat MI, Kapila R (2017) Dietary metabolites derived from gut microbiota: critical modulators of epigenetic changes in mammals. Nutr Rev 75:374–389\nBourassa MW, Alim I, Bultman SJ, Ratan RR (2016) Butyrate, neuroepigenetics and the gut microbiome: can a high fiber diet improve brain health? Neurosci Lett 625:56–63\nCanani RB, Di Costanzo M, Leone L (2012) The epigenetic effects of butyrate: potential therapeutic implications for clinical practice. Clin Epigenetics 4:4\nCortese R, Lu L, Yu Y, Ruden D, Claud EC (2016) Epigenome-microbiome crosstalk: a potential new paradigm influencing neonatal susceptibility to disease. Epigenetics 11:205–215\nDonohoe DR, Collins LB, Wali A, Bigler R, Sun W, Bultman SJ (2012) The Warburg effect dictates the mechanism of butyrate-mediated histone acetylation and cell proliferation. Mol Cell 48:612–626\nDonohoe DR, Holley D, Collins LB, Montgomery SA, Whitmore AC, Hillhouse A, Curry KP, Renner SW, Greenwalt A, Ryan EP, Godfrey VA (2014) Gnotobiotic mouse model demonstrates that dietary fiber protects against colorectal tumorigenesis in a microbiota-and butyrate-dependent manner. Cancer Discov 4:1387–1397\nFeinberg AP (2008) Epigenetics at the epicenter of modern medicine. Jama 299:1345–1350\nFlavahan WA, Gaskell E, Bernstein BE (2017) Epigenetic plasticity and the hallmarks of cancer. Science 357:aal2380\nGhadimi D, Helwig U, Schrezenmeir J, Heller KJ, Vrese M (2012) Epigenetic imprinting by commensal probiotics inhibits the IL-23\u002FIL-17 axis in an in vitro model of the intestinal mucosal immune system. J Leukoc Biol 92:895–911\nGong ZY, Yuan ZQ, Dong ZW, Peng YZ (2017) Glutamine with probiotics attenuates intestinal inflammation and oxidative stress in a rat burn injury model through altered iNOS gene aberrant methylation. Am J Transl Res 9:2535\nGury-BenAri M, Thaiss CA, Serafini N, Winter DR, Giladi A, Lara-Astiaso D, Levy M, Salame TM, Weiner A, David E, Shapiro H (2016) The spectrum and regulatory landscape of intestinal innate lymphoid cells are shaped by the microbiome. Cell 166:1231–1246\nHaller D, Holt L, Kim SC, Schwabe RF, Sartor RB, Jobin C (2003) Transforming growth factor-β1 inhibits non-pathogenic gram negative bacteria-induced NF-κB recruitment to the interleukin-6 gene promoter in intestinal epithelial cells through modulation of histone acetylation. J Biol Chem 278:23851–23860\nJacob RA, Gretz DM, Taylor PC, James SJ, Pogribny IP, Miller BJ, Henning SM, Swendseid ME (1998) Moderate folate depletion increases plasma homocysteine and decreases lymphocyte DNA methylation in postmenopausal women. J Nutr 128:1204–1212\nKendrick SF, O'boyle G, Mann J, Zeybel M, Palmer J, Jones DE, Day CP (2010) Acetate, the key modulator of inflammatory responses in acute alcoholic hepatitis. Hepatology 51:1988–1997\nLee J, Jang A, Kim JW, Han JH, Chun BH, Jung HS, Jeon CO, Myung SC (2017a) Distinct histone modifications modulate DEFB1 expression in human vaginal keratinocytes in response to Lactobacillus spp. Probiotics Antimicrob Proteins 9:406–414\nLee ES, Song EJ, Nam YD (2017b) Dysbiosis of gut microbiome and its impact on epigenetic regulation. J Clin Epigenet 3(S1):14. https:\u002F\u002Fdoi.org\u002F10.21767\u002F2472-1158.100048\nLightfoot YL, Yang T, Sahay B, Mohamadzadeh M (2013) Targeting aberrant colon cancer-specific DNA methylation with lipoteichoic acid-deficient Lactobacillus acidophilus. Gut Microbes 4:84–88\nMcKay JA, Mathers JC (2011) Diet induced epigenetic changes and their implications for health. Acta Physiol 202:103–118\nNoack J, Dongowski G, Hartmann L, Blaut M (2000) The human gut bacteria Bacteroides thetaiotaomicron and Fusobacterium varium produce putrescine and spermidine in cecum of pectin-fed gnotobiotic rats. J Nutr 130:1225–1231\nOka T, Sato H, Ouchida M, Utsunomiya A, Yoshino T (2011) Cumulative epigenetic abnormalities in host genes with viral and microbial infection during initiation and progression of malignant lymphoma\u002Fleukemia. Cancers 3:568–581\nQureshi SA, Bashir MU, Yaqinuddin A (2010) Utility of DNA methylation markers for diagnosing cancer. Int J Surg 8:194–198\nRada-Iglesias A, Enroth S, Ameur A, Koch CM, Clelland GK, Respuela-Alonso P, Wilcox S, Dovey OM, Ellis PD, Langford CF, Dunham I (2007) Butyrate mediates decrease of histone acetylation centered on transcription start sites and down-regulation of associated genes. Genome Res 17:708–719\nRogers GB, Keating DJ, Young RL, Wong ML, Licinio J (2016) Wesselingh, S. From gut dysbiosis to altered brain function and mental illness: mechanisms and pathways. Mol Psychiatry 21:738\nRooks MG, Garrett WS (2016) Gut microbiota, metabolites and host immunity. Nat Rev Immunol 16:341\nSafronova O, Morita I (2010) Transcriptome remodeling in hypoxic inflammation. J Dent Res 89(5):430–444\nSaliganti V, Kapila R, Sharma R, Kapila S (2015) Feeding probiotic Lactobacillus rhamnosus (MTCC 5897) fermented milk to suckling mothers alleviates ovalbumin-induced allergic sensitisation in mice offspring. Br J Nutr 114:1168–1179\nSchmeck B, Beermann W, van Laak V, Zahlten J, Opitz B, Witzenrath M, Hocke AC, Chakraborty T, Kracht M, Rosseau S, Suttorp N (2005) Intracellular bacteria differentially regulated endothelial cytokine release by MAPK-dependent histone modification. J Immunol 175:2843–2850\nSharma R, Kapila R, Dass G, Kapila S (2014a) Improvement in Th1\u002FTh2 immune homeostasis, antioxidative status and resistance to pathogenic E. coli on consumption of probiotic Lactobacillus rhamnosus fermented milk in aging mice. Age 36:9686\nSharma R, Kapila R, Kapasiya M, Saliganti V, Dass G, Kapila S (2014b) Dietary supplementation of milk fermented with probiotic Lactobacillus fermentum enhances systemic immune response and antioxidant capacity in aging mice. Nutr Res 34:968–981\nStilling RM, Dinan TG, Cryan JF (2014) Microbial genes, brain & behaviour–epigenetic regulation of the gut–brain axis. Genes Brain Behav 13:69–86\nTakahashi K, Sugi Y, Nakano K, Tsuda M, Kurihara K, Hosono A, Kaminogawa S (2011) Epigenetic control of host gene by commensal bacteria in large intestinal epithelial cells. J Biol Chem 286:35755–35762\nTollefsbol TO (2017) Handbook of epigenetics: the new molecular and medical genetics (2nd ed.). Academic Press, London\nVel Szic KS, Declerck K, Vidakovic M, Berghe WV (2015) From inflammaging to healthy aging by dietary lifestyle choices: is epigenetics the key to personalized nutrition? Clin Epigenetics 7:33\nWang Y, Yan L, Zhang Z, Prado E, Fu L, Xu X, Du L (2018) Epigenetic regulation and its therapeutic potential in pulmonary hypertension. Front Pharmacol 9:241\nWong CC, Qian Y, Yu J (2017) Interplay between epigenetics and metabolism in oncogenesis: mechanisms and therapeutic approaches. Oncogene 36:3359\nWoo H, Ha SD, Lee SB, Buratowski S, Kim T (2017) Modulation of gene expression dynamics by co-transcriptional histone methylations. Exp Mol Med 49:326\nXia G, Schneider-Stock R, Diestel A, Habold C, Krueger S, Roessner A, Naumann M, Lendeckel U (2008) Helicobacter pylori regulates p21 WAF1 by histone H4 acetylation. Biochem Biophys Res Commun 369:526–531\nZhou M, He J, Shen Y, Zhang C, Wang J, Chen Y (2017) New frontiers in genetics, gut microbiota, and immunity: a Rosetta stone for the pathogenesis of inflammatory bowel disease. Biomed Res Int 2017:8201672",{"VOID":1577},"10.1007\u002Fs13213-019-01451-0","https:\u002F\u002Fannalsmicrobiology.biomedcentral.com\u002Farticles\u002F10.1007\u002Fs13213-019-01451-0",[1580,1595,1608,1621],{"id":1581,"sortIndex":32,"researcher":28,"roles":1582,"affiliations":1583,"properties":1592,"displayName":1594,"givenName":28,"familyName":28},"c5ed7fae-652e-4ced-b082-f61280ab7892",[965],[1584],{"id":1585,"sortIndex":32,"affiliation":1586,"properties":28},"1745b67d-d478-4529-9fae-b14a5fbce409",{"id":1585,"createTime":28,"updateTime":28,"relativeEntities":1587,"slug":28,"properties":1588,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1591,"statistic":28},[],{"title":1589},{"VI":1590},"Animal Biochemistry Division, ICAR-National Dairy Research Institute, Karnal, India",[],{"title":1593},{"VI":1594},"Mohd Iqbal Bhat",{"id":1596,"sortIndex":40,"researcher":28,"roles":1597,"affiliations":1598,"properties":1605,"displayName":1607,"givenName":28,"familyName":28},"acfee51b-a545-4522-a2b2-bf757dd91462",[965],[1599],{"id":1585,"sortIndex":32,"affiliation":1600,"properties":28},{"id":1585,"createTime":28,"updateTime":28,"relativeEntities":1601,"slug":28,"properties":1602,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1604,"statistic":28},[],{"title":1603},{"VI":1590},[],{"title":1606},{"VI":1607},"Ankita Kumari",{"id":1609,"sortIndex":123,"researcher":28,"roles":1610,"affiliations":1611,"properties":1618,"displayName":1620,"givenName":28,"familyName":28},"1a7a6ee6-d432-4911-9bee-17db44145ac8",[965],[1612],{"id":1585,"sortIndex":32,"affiliation":1613,"properties":28},{"id":1585,"createTime":28,"updateTime":28,"relativeEntities":1614,"slug":28,"properties":1615,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1617,"statistic":28},[],{"title":1616},{"VI":1590},[],{"title":1619},{"VI":1620},"Suman Kapila",{"id":1622,"sortIndex":42,"researcher":28,"roles":1623,"affiliations":1624,"properties":1631,"displayName":1633,"givenName":28,"familyName":28},"b61149a5-421b-499a-9cc4-af88acce638f",[965],[1625],{"id":1585,"sortIndex":32,"affiliation":1626,"properties":28},{"id":1585,"createTime":28,"updateTime":28,"relativeEntities":1627,"slug":28,"properties":1628,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1630,"statistic":28},[],{"title":1629},{"VI":1590},[],{"title":1632},{"VI":1633},"Rajeev Kapila",{"url":1578,"publisher":1635,"properties":1676},{"id":868,"createTime":869,"updateTime":870,"relativeEntities":1636,"slug":872,"properties":1637,"entityType":25,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":32,"subjectFields":1640,"manageAffiliations":1645,"indexDatabases":1656,"url":932,"thumbnailPath":28,"statistic":1671,"gsStatistic":28,"type":55,"analyzePriority":28},[],{"issn":1638,"title":1639},{"VOID":875},{"EN":877},[1641],{"id":881,"createTime":28,"updateTime":28,"relativeEntities":1642,"label":1643,"description":1644,"parentId":28,"standard":28,"scholarHubFieldId":28},[],{"EN":884},{},[1646,1651],{"id":888,"createTime":28,"updateTime":28,"relativeEntities":1647,"slug":28,"properties":1648,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1650,"statistic":28},[],{"title":1649},{"EN":892},[],{"id":895,"createTime":28,"updateTime":28,"relativeEntities":1652,"slug":28,"properties":1653,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1655,"statistic":28},[],{"title":1654},{"EN":899},[901],[1657,1664],{"id":904,"indexDatabase":1658,"url":910,"indexYears":911,"academicFieldIds":1663,"indexDatabaseRanking":914},{"id":775,"createTime":28,"updateTime":28,"relativeEntities":1659,"label":1660,"description":1661,"key":781,"publicationTags":1662,"standard":28},[],{"EN":778,"VI":778},{"EN":778,"VI":780},[783],[913],{"id":916,"indexDatabase":1665,"url":928,"indexYears":28,"academicFieldIds":1670,"indexDatabaseRanking":28},{"id":918,"createTime":28,"updateTime":28,"relativeEntities":1666,"label":1667,"description":1668,"key":925,"publicationTags":1669,"standard":28},[],{"EN":921,"VI":921},{"EN":923,"VI":924},[927,813],[930,931],{"impactFactor":32,"impactFactorByYear":1672,"i10Index":32,"i10IndexLast5Year":32,"totalPublication":40,"totalPublicationByYear":1673,"totalCitation":32,"totalCitationByYear":1674,"totalCitationPerPublication":32,"totalCitationPerPublicationByYear":1675,"hindexLast5Year":32,"hindex":32},{},{"2023":40},{},{},{"pages":1677,"volume":1679},{"VOID":1678},"603-612",{"VOID":1680},"69","2019-02-26",2019,[914,927],{"id":1685,"createTime":1686,"updateTime":1687,"relativeEntities":1688,"slug":1689,"properties":1690,"entityType":957,"verifyStatus":26,"verifyTime":1687,"verifyNote":959,"languages":28,"translateLanguages":28,"viewCount":32,"primaryUrl":1699,"fullTextUrl":28,"authors":1700,"publicationType":1004,"publisherRelationship":1725,"citationCount":28,"citationInfo":28,"publishDate":1771,"publishYear":1682,"citationAnalyzeStatus":878,"lastCitationAnalyze":28,"indexDatabases":1772,"openAccess":28,"references":28,"isForceReanalyzing":1055},"00d09e07-b8c2-44ae-816d-5408cc2e88f3","2024-01-27T11:35:35.810+00:00","2024-09-11T13:10:08.112+00:00",[],"Phototrophic-biofilm-communities-and-adaptation-to-growth-on-ancient-archaeological-surfaces",{"abstract":1691,"title":1693,"references":1695,"doi":1697},{"EN":1692},"Hypogea can be considered under-examined environments as regards microbial biodiversity. New understanding has been gained about the predominant phototrophic microorganisms forming biofilms colonising archaeological surfaces in hypogea. In fact, the description of new taxa has remained elusive until recently, as many biofilm-forming phototrophs possess a cryptic morphology with a lack of specialised cells. A multiphasic study, including cytomorphological and ecological descriptions, genetic and biochemical analysis was carried out on the biofilms colonising hypogean environments around the Maltese islands. Molecular studies were imperative because biodiversity was found to be more complex than that indicated by classical taxonomy. The dominant microbial life-form on archaeological surfaces is a compact subaerial biofilm. This study has led to new strains of the eukaryotic microalgal genus Jenufa, and the prokaryotic cyanobacteria Oculatella, Albertania and Nodosilinea being identified as the principal phototrophic biofilm-formers colonising the ancient decorated surfaces of Maltese hypogea. Complex morphologies and elaborate life cycles were eliminated as biodiversity was dictated only by the local contemporary microenvironment. The production of thick multilayered sheaths aided adherence to the substrate, concentrating microbial cells in biofilm formation. Albertania skiophila trichomes were able to glide inside the extracellular matrix. Oculatella subterranea exhibited phototaxis associated with a photosensitive apical cell containing a rhodopsin-like pigment. The biofilm provided a protective barrier and an improved chance of survival for cells growing in a low-nutrient, low-light environment. Effective strategies to prevent and control the growth of biofilms on the archaeological surface should take into consideration the adaptation of microorganisms to this particular mode of life.",{"EN":1694},"Phototrophic biofilm communities and adaptation to growth on ancient archaeological surfaces",{"VOID":1696},"Agius M (2018) The characterisation of Maltese microalgal Jenufa strains. Dissertation, University of Malta\nAlbertano P, Urzì C (1999) Structural interactions among epilithic cyanobacteria and heterotrophic microorganisms in Roman hypogea. Microb Ecol 38:244–252\nAltschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410\nBharti A, Velmourougane K, Prasanna R (2017) Phototrophic biofilms: diversity, ecology and applications. J Appl Phycol 29:2729–2744\nBorzí A (1907) Conspectus generum Stigonematacearum. Nuova Notarisia 18:37–38\nBorzí A (1917) Studi sulle Mixoficee (continuaz.). Nuov Giorn Bot Ital, Nuova serie 24:65–112\nBruno L, Billi D, Albertano P, Urzí C (2006) Genetic characterization of epilithic cyanobacteria and their associated bacteria. Geomicrobiol J 23:293–299\nBruno L, Billi D, Bellezza S, Albertano P (2009) Cytomorphological and genetic characterization of troglobitic Leptolyngbya strains isolated from Roman hypogea. Appl Environ Microbiol 75:608–617\nCañaveras JC, Cuezva S, Sanchez-Moral S, Lario J, Laiz L, Gonzalez JM, Sáiz-Jiménez C (2006) On the origin of fiber calcite crystals in moonmilk deposits. Naturwissenschaften 93:27–32\nChristodoulou M, Meletiou-Christou MS, Parmakelis A, Economou-Amilli A, Pantazidou A (2015) Further findings from Daveli Cave (Attica, Greece) enhancing the establishment of the genus Oculatella (Pseudanabaenaceae, Cyanobacteria). Phytotaxa 202:169–184\nDe Leo F, Iero A, Zammit G, Urzì C (2012) Chemoorganotrophic bacteria isolated from biodeteriorated surfaces in caves and catacombs. Int J Speleol 41:1–12\nDel Mondo A, Pinto G, Carbone DA, Pollio A, De Natale A (2018) Biofilm architecture on different substrates of an Oculatella subterranea (Cyanobacteria) strain isolated from Pompeii archaeological site (Italy). Environ Sci Pollut Res 25:26079–26089\nDornieden T, Gorbushina AA, Krumbein WE (2000) Biodecay of cultural heritage as a space\u002Ftime-related ecological situation—an evaluation of a series of studies. Int Biodeterior Biodegrad 46:261–270\nFlemming H-C, Wingender J (2010) The biofilm matrix. Nat Rev Microbiol 8:623–633\nFriedmann I (1955) Geitlerea calcarea n. gen. et n. sp. A new atmophytic lime-incrusting blue-green alga. Bot Notiser 108:439–445\nHall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95\u002F98\u002FNT. Nucleic Acids Symp Ser 41:95–98\nHasegawa M, Kishino H, Yano T (1985) Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Biol 22:160–174\nHaugen P, Bhattacharya D, Palmer JD, Turner S, Lewis LA, Pryer KM (2007) Cyanobacterial ribosomal RNA genes with multiple endonuclease-encoding group I introns. BMC Evol Biol 7:159–167\nKomárek J (2016) A polyphasic approach for the taxonomy of cyanobacteria: principles and applications. Eur J Phycol 51:346–353\nLamprinou V, Hernández-Mariné M, Canals T, Kormas K, Economou-Amilli A, Pantazidou A (2011) Morphology and molecular evaluation of Iphinoe spelaeobios gen. nov., sp. nov. and Loriellopsis cavernicola gen. nov., sp. nov., two stigonematalean cyanobacteria from Greek and Spanish caves. Int J Syst Evol Microbiol 61:2907–2915\nLamprinou V, Christodoulou M, Hernández-Mariné M, Parmakelis A, Economou-Amilli A (2016) Spelaeonaias gen. nov., a new true-branched cyanobacterium from Cave Vlychada (Diros, Peloponnese, Greece). Phytotaxa 282:171–185\nMartin-Sanchez PM, Nováková A, Bastian F, Alabouvette C, Sáiz-Jiménez C (2012) Use of biocides for the control of fungal outbreaks in subterranean environments: the case of the Lascaux Cave in France. Environ Sci Technol 46:3762–3770\nMiscoe LH, Johansen JR, Kociolek JP, Lowe RL, Vaccarino MA, Pietrasiak N, Sherwood AR (2016) The diatom flora and cyanobacteria from caves on Kauai, Hawaii. Borntraeger Science Publishers, Stuttgart, Germany. 152 pp.\nNěmcová Y, Eliáš M, Škaloud P, Hodač L, Neustupa J (2011) Jenufa gen. nov.: a new genus of coccoid green algae (chlorophyceae, incertae sedis) previously recorded by environmental sequencing. J Phycol 47:928–938\nPerera I, Subashchandrabose SR, Venkateswarlu K, Naidu R, Megharaj M (2018) Consortia of cyanobacteria\u002Fmicroalgae and bacteria in desert soils: an underexplored microbiota. Appl Microbiol Biotechnol 102:7351–7363\nPerkerson RB, Johansen JR, Kovácik L, Brand J, Kaštovský J, Casamatta DA (2011) A unique Pseudanabaenalean (cCanobacteria) genus Nodosilinea gen. nov. based on morphological and molecular data. J Phycol 47:1397–1412\nRodriguez F, Oliver JL, Marin A, Medina JR (1990) The general stochastic model of nucleotide substitution. J Theor Biol 142:485–501\nRonquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574\nRossi F, De Philippis R (2015) Role of cyanobacterial exopolysaccharides in phototrophic biofilms and in complex microbial mats. Life 5:1218–1238\nSafi C, Frances C, Ursu AV, Laroche C, Pouzet C, Vaca-Garcia C, Pontalier PY (2015) Understanding the effect of cell disruption methods on the diffusion of Chlorella vulgaris proteins and pigments in the aqueous phase. Algal Res 8:61–68\nSáiz-Jiménez C (2014) The conservation of subterranean cultural heritage. Taylor & Francis, London\nSaw JHW, Schatz M, Brown MV, Kunkel DD, Foster JS, Shick H, Christensen S, Hou S, Wan X, Donachie SP (2013) Cultivation and complete genome sequencing of Gloeobacter kilaueensis sp. nov., from a lava cave in Kīlauea Caldera, Hawai’i. PLoS One 8:e76376\nSciuto K, Moschin E, Moro I (2017) Cryptic cyanobacterial diversity in the Giant Cave (Trieste, Italy): the new genus Timaviella (Leptolyngbyaceae). Cryptogam Algol 38:285–323\nSommier S (1908) Le isole pelagie: Lampedusa, Linosa, Lampione e la loro flora con un elenco completo delle piante di Pantelleria. Firenze, Pellas\nSwofford DL (1999) PAUP* 4.0: phylogenetic analysis using parsimony (*and other methods). 4.0b2a. Sinauer Associates, Sunderland, Massachusetts\nTrunk T, Salah Khalil H, Leo JC (2018) Bacterial autoaggregation. AIMS Microbiol 4:140–164\nUnković N, Dimkić I, Stupar M, Stanković S, Vukojević J, Grbić ML (2018) Biodegradative potential of fungal isolates from sacral ambient: in vitro study as risk assessment implication for the conservation of wall paintings. PLoS One 13:e0190922\nUrzì C, De Leo F (2001) Sampling with adhesive tape strips: an easy and rapid method to monitor microbial colonization on monument surfaces. J Microbiol Methods 44:1–11\nUrzì C, Bruno L, De Leo F (2018) Biodeterioration of paintings in caves, catacombs and other hypogean sites. In: Mitchell R, Clifford J (eds) Biodeterioration and preservation in art, archaeology and architecture. Archetype Publications, London, pp 114–129\nVázquez-Martínez J, Gutierrez-Villagomez JM, Fonseca-García C, Ramírez-Chavez E Mondragón-Sánchez MA, Partida- Martínez L, Johansen JR, Molina-Torres J (2018) Nodosilinea chupicuarensis sp. nov. (Leptolyngbyaceae, Synechococcales) a subaerial cyanobacterium isolated from a stone monument in Central Mexico. Phytotaxa 334:167–182\nWilmotte A, Van Der Auwera G, De Wachter R (1993) Structure of the 16S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF (‘Mastigocladus laminosus HTF’) strain PCC7518, and phylogenetic analysis. FEBS Lett 317:96–100\nZammit G (2018) Systematics and biogeography of sciophilous cyanobacteria: an ecological and molecular description of Albertania skiophila (Leptolyngbyaceae) gen. et sp. nov. Phycologia 57:481–491\nZammit G, Psaila R, Albertano P (2008) An investigation into biodeterioration caused by microbial communities colonising artworks in Maltese Palaeo-Christian Catacombs. In: Notea A. and Y. Shoef (eds) Art 2008 -9 th International Conference on Non-destructive testing, microanalysis and preservation in the conservation of cultural and environmental heritage. ISAS International Seminars Ltd, Jerusalem, Israel, pp 1–10\nZammit G, De Leo F, Urzì C, Albertano P (2009) A non-invasive approach to the polyphasic study of biodeteriogenic biofilms at St Agatha Crypt and Catacombs at Rabat, Malta. In: Meli G. (ed) Science and cultural heritage in the Mediterranean area – diagnostics, conservation experiences and proposals for a risk map, conference proceedings, Palermo, 18–21 October 2007. Priulla Srl,Italy, pp 323–327\nZammit G, Kaštovský J, Albertano P (2010) A first cytomorphological and molecular characterisation of a new Stigonematalean cyanobacterial morphotype isolated from Maltese catacombs. Algol Stud 135:1–14\nZammit G, Billi D, Shubert E, Kaštovský J, Albertano P (2011a) The biodiversity of subaerophytic phototrophic biofilms from Maltese hypogea. Fottea 11:187–201\nZammit G, Sánchez-Moral S, Albertano P (2011b) Bacterially mediated mineralisation processes lead to biodeterioration of artworks in Maltese catacombs. Sci Total Environ 409:2773–2782\nZammit G, Billi D, Albertano P (2012) The subaerophytic cyanobacterium Oculatella subterranea (Oscillatoriales, Cyanophyceae) gen. et sp. nov: a cytomorphological and molecular description. Eur J Phycol 47:341–354",{"VOID":1698},"10.1007\u002Fs13213-019-01471-w","https:\u002F\u002Fannalsmicrobiology.biomedcentral.com\u002Farticles\u002F10.1007\u002Fs13213-019-01471-w",[1701],{"id":1702,"sortIndex":32,"researcher":28,"roles":1703,"affiliations":1704,"properties":1722,"displayName":1724,"givenName":28,"familyName":28},"0e74e934-70fa-439f-83a5-eef0899f443f",[965],[1705,1713],{"id":1706,"sortIndex":32,"affiliation":1707,"properties":28},"98df07c8-5250-4fee-b834-346b185d7874",{"id":1706,"createTime":28,"updateTime":28,"relativeEntities":1708,"slug":28,"properties":1709,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1712,"statistic":28},[],{"title":1710},{"VI":1711},"Laboratory of Applied Phycology, Centre for Molecular Medicine and Biobanking, Fourth Floor, Biomedical Sciences Building, University of Malta, Msida, Malta",[],{"id":1714,"sortIndex":40,"affiliation":1715,"properties":1721},"612d4bfa-7414-4e33-bb0a-3a58dc705683",{"id":1714,"createTime":28,"updateTime":28,"relativeEntities":1716,"slug":28,"properties":1717,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1720,"statistic":28},[],{"title":1718},{"VI":1719},"Microbiology Lab, Department of Biology, Second Floor, Biomedical Sciences Building, University of Malta, Msida, Malta",[],{},{"title":1723},{"VI":1724},"Gabrielle Zammit",{"url":1699,"publisher":1726,"properties":1767},{"id":868,"createTime":869,"updateTime":870,"relativeEntities":1727,"slug":872,"properties":1728,"entityType":25,"verifyStatus":878,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":32,"subjectFields":1731,"manageAffiliations":1736,"indexDatabases":1747,"url":932,"thumbnailPath":28,"statistic":1762,"gsStatistic":28,"type":55,"analyzePriority":28},[],{"issn":1729,"title":1730},{"VOID":875},{"EN":877},[1732],{"id":881,"createTime":28,"updateTime":28,"relativeEntities":1733,"label":1734,"description":1735,"parentId":28,"standard":28,"scholarHubFieldId":28},[],{"EN":884},{},[1737,1742],{"id":888,"createTime":28,"updateTime":28,"relativeEntities":1738,"slug":28,"properties":1739,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1741,"statistic":28},[],{"title":1740},{"EN":892},[],{"id":895,"createTime":28,"updateTime":28,"relativeEntities":1743,"slug":28,"properties":1744,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1746,"statistic":28},[],{"title":1745},{"EN":899},[901],[1748,1755],{"id":904,"indexDatabase":1749,"url":910,"indexYears":911,"academicFieldIds":1754,"indexDatabaseRanking":914},{"id":775,"createTime":28,"updateTime":28,"relativeEntities":1750,"label":1751,"description":1752,"key":781,"publicationTags":1753,"standard":28},[],{"EN":778,"VI":778},{"EN":778,"VI":780},[783],[913],{"id":916,"indexDatabase":1756,"url":928,"indexYears":28,"academicFieldIds":1761,"indexDatabaseRanking":28},{"id":918,"createTime":28,"updateTime":28,"relativeEntities":1757,"label":1758,"description":1759,"key":925,"publicationTags":1760,"standard":28},[],{"EN":921,"VI":921},{"EN":923,"VI":924},[927,813],[930,931],{"impactFactor":32,"impactFactorByYear":1763,"i10Index":32,"i10IndexLast5Year":32,"totalPublication":40,"totalPublicationByYear":1764,"totalCitation":32,"totalCitationByYear":1765,"totalCitationPerPublication":32,"totalCitationPerPublicationByYear":1766,"hindexLast5Year":32,"hindex":32},{},{"2023":40},{},{},{"pages":1768,"volume":1770},{"VOID":1769},"1047-1058",{"VOID":1680},"2019-04-17",[914,927],{"id":1774,"createTime":1775,"updateTime":1776,"relativeEntities":1777,"slug":1778,"properties":1779,"entityType":957,"verifyStatus":26,"verifyTime":1776,"verifyNote":959,"languages":28,"translateLanguages":28,"viewCount":32,"primaryUrl":1788,"fullTextUrl":28,"authors":1789,"publicationType":1004,"publisherRelationship":1866,"citationCount":28,"citationInfo":28,"publishDate":1912,"publishYear":1053,"citationAnalyzeStatus":878,"lastCitationAnalyze":28,"indexDatabases":1913,"openAccess":28,"references":28,"isForceReanalyzing":1055},"010d51ba-8923-4269-8939-0f199c7ef573","2023-12-01T09:25:56.118+00:00","2024-12-15T15:01:19.252+00:00",[],"Al3-and-Fe2-toxicity-reduction-potential-by-acid-resistant-strains-of-Rhodopseudomonas-palustris-isolated-from-acid-sulfate-soils-under-acidic-conditions",{"abstract":1780,"title":1782,"references":1784,"doi":1786},{"EN":1781},"This research aimed to evaluate the capacity of acid-resistant purple nonsulfur bacteria, Rhodopseudomonas palustris strains VNW02, TLS06, VNW64, and VNS89, to resist Al3+ and Fe2+ and to investigate their potential to remove both metals from aqueous solutions using exopolymeric substances (EPS) and biomasses. Based on median inhibition concentration (IC50), strain VNW64 was the most resistant to both metals under conditions of aerobic dark and microaerobic light; however, strain TLS06 was more resistant to Al3+ under aerobic dark conditions. High metal concentrations resulted in an altered cellular morphology, particularly for strain TLS06. Metal accumulation in all tested PNSB under both incubating conditions as individual Al3+ or Fe2+ was in the order of cell wall > cytoplasm > cell membrane. This was also found in a mixed metal set only under conditions of aerobic dark as microaerobic light was in the degree of cytoplasm > cell wall > cell membrane. Of all strains tested, EPS from strain VNW64 had the lowest carbohydrate and the highest protein contents. Metal biosorption under both incubating conditions, EPS produced by strains VNW64 and TLS06, achieved greater removal (80 mg Al3+ L−1 and\u002For 300 mg Fe2+ L−1) than their biomasses. Additionally, strain VNW64 had a higher removal efficiency compared to strain TLS06. Based on the alteration in cellular morphology, including biosorption and bioaccumulation mechanisms, R. palustris strains VNW64 and TLS06 demonstrated their resistance to metal toxicity. Hence, they may have great potential for ameliorating the toxicity of Al3+ and Fe2+ in acid sulfate soils for rice cultivation.",{"EN":1783},"Al3+ and Fe2+ toxicity reduction potential by acid-resistant strains of Rhodopseudomonas palustris isolated from acid sulfate soils under acidic conditions",{"VOID":1785},"Aguilera A, Souza-Egipsy V, San Martín-Úriz P, Amils R (2008) Extraction of extracellular polymeric substances from extreme acidic microbial biofilms. Appl Microbiol Biot 78(6):1079–1088\nAttanandana T, Vacharotayan S (1986) Acid sulfate soils: their characteristics, genesis, amelioration and utilization. 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Environ Sci Technol 51(15):8384–8395\nWingender J, Neu TR, Flemming HC (1999) Microbial extracellular polymeric substances. Springer, Berlin Heidelberg\nWurl O, Miller L, Vagle S (2011) Production and fate of transparent exopolymer particles in the ocean. J Geophys Res 116(C7):C00H13\nXuan W, Bin Z, Zhiqiang S, Zhigang Q, Zhaoli C, Min J, Junwen L, Jingfeng W (2010) The EPS characteristics of sludge in an aerobic granule membrane bioreactor. Bioresour Technol 101(21):8046–8050\nYuan DQ, Wang YY (2013) Effects of solution conditions on the physicochemical properties of stratification components of extracellular polymeric substances in anaerobic digested sludge. J Environ Sci 25(1):155–162",{"VOID":1787},"10.1007\u002Fs13213-018-1332-4","http:\u002F\u002Flink.springer.com\u002F10.1007\u002Fs13213-018-1332-4",[1790,1814,1838,1853],{"id":1791,"sortIndex":32,"researcher":28,"roles":1792,"affiliations":1793,"properties":1811,"displayName":1813,"givenName":28,"familyName":28},"152ddb82-d2ad-48a7-a807-04d5402cf173",[965],[1794,1802],{"id":1795,"sortIndex":32,"affiliation":1796,"properties":28},"672a8c79-1661-4087-96c2-83effb6f4ddb",{"id":1795,"createTime":28,"updateTime":28,"relativeEntities":1797,"slug":28,"properties":1798,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1801,"statistic":28},[],{"title":1799},{"EN":1800},"Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat-Yai, 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evolution of the yeast populations was investigated during controlled and spontaneous fermentations of Chardonnay must in two Franciacorta wineries (A and B) that used the same starter culture. Two hundred and three isolates were collected and identified as Saccharomyces cerevisiae (97.5 %), Pichia membranifaciens (2.0 %) and Hanseniaspora vinae (0.5 %) through the analyses of ITS rDNA region by RFLP, D1\u002FD2 of 26S rDNA partial sequence and scHO gene. A high intraspecific diversity of S. cerevisiae isolates was detected by means of the inter-delta sequence PCR analysis: 117 profiles corresponding to different strains were distinguished (at level of similarity \u003C90.5 %) and monitored to follow the dynamics of cell populations. In winery A, the commercial strain maintained the predominance since its δ-PCR profile constituted most of the colonies recovered at different times of sampling (from 44 to 100 % of plate counts), in this case only 18 different genotypes out of 74 isolates were recognized. In winery B, where spontaneous fermentations were performed in the same environment, the starter culture never took control and a succession of indigenous populations overcame without one prevailed on the others; actually, 40 genotypes out of 53 isolates can be identified. The highest level of biodiversity was observed in spontaneous fermentation (winery B) where 59 genotypes out of 71 S. cerevisiae isolates were discriminated; a continuous change in cell populations was noticed with the simultaneous presence from 6 to 10 different genotypes. The management of the starter culture and the environmental hygiene was shown to be fundamental to control the inoculated fermentations.",{"EN":1922},"Dynamics of Saccharomyces cerevisiae populations in controlled and spontaneous fermentations for Franciacorta D.O.C.G. base wine production",{"VOID":1924},"Barata A, Malfeito-Ferreira M, Loureiro V (2012) The microbial ecology of wine grape berries. Int J Food Microbiol 153:243–259\nBarrajon N, Arevalo-Villena M, Ubeda J, Briones A (2011) Enological properties in wild and commercial Saccharomyces cerevisiae yeasts: relationship with competition during alcoholic fermentation. World J Microbiol Biotechnol 27:2703–2710\nBeltran G, Torija MJ, Novo M, Ferrer N, Poblet M, Guillamon JM, Rozès N, Mas A (2002) Analysis of yeast populations during alcoholic fermentation: a six year follow-up study. Syst Appl Microbiol 25:287–293\nBlanco P, Ramilo A, Cerdeira M, Orriols I (2006) Genetic diversity of wine Saccharomyces cerevisiae strains in an experimental winery from Galicia (NW Spain). Antonie Van Leeuwenhoek 89:351–357\nCappello MS, Bleve G, Grieco F, Dellaglio F, Zacheo G (2004) Characterization of Saccharomyces cerevisiae strains isolated from must of grape grown in experimental vineyard. J Appl Microbiol 97:1274–1280\nCebollero E, Gonzalez R (2006) Induction of autophagy by second fermentation yeasts during elaboration of sparkling wines. Appl Environ Microbiol 72:4121–4127\nClavijo A, Caldéron IL (2011) Yeast assessment during alcoholic fermentation inoculated with a natural “pied de cuve” or a commercial strain. World J Microbiol Biotechnol 27:1569–1577\nCocolin L, Bisson LF, Mills DA (2000) Direct profiling of the yeast dynamics in wine fermentations. FEMS Microbiol Lett 189(1):81–87\nCsoma H, Zakany N, Capece A, Romano P, Sipiczky M (2010) Biological diversity of Saccharomyces yeasts of spontaneously fermenting wines in four wine regions: comparative genotypic and phenotypic analysis. Int J Food Microbiol 140:239–248\nDe Melo Pereira GV, Ramos CL, Galvao C, Souza Dias E, Schwan RF (2010) Use of specific PCR primers to identify three important industrial species of Saccharomyces genus: Saccharomyces cerevisiae, Saccharomyces bayanus and Saccharomyces pastorianus. Lett Appl Microbiol 51:131–137\nDi Maio S, Polizzotto G, Di Gangi E, Foresta G, Genna G, Verzera A, Scacco A, Amore G, Oliva D (2012) Biodiversity of indigenous Saccharomyces populations from old wineries of South-Eastern Sicily (Italy): preservation and economic Potential. PLoS ONE 7(2):e30428\nEgli C, Edinger W, Mitrakul C, Henick-Kling T (1998) Dynamics of indigenous and inoculated yeast populations and their effect on the sensory character of Riesling and Chardonnay wines. J Appl Microbiol 85:779–789\nEsteve-Zarzoso B, Belloch C, Uruburu F, Querol A (1999) Identification of yeasts by RFLP analysis of the 5.85 rRNA gene and the two ribosomal internal transcribed spacers. Int J Syst Bacteriol 49:329–337\nEsteve-Zarzoso B, Peris-Toran MJ, Garcia-Maiquez E, Uruburu F, Querol A (2001) Yeast population dynamics during the fermentation and biological aging of Sherry wines. Appl Environ Microbiol 67:2056–2061\nFleet GH, Heard G (1993) Yeasts: growth during fermentation. In: Fleet GH (ed) Wine Microbiology and Biotechnology. Harwood, Chur, pp 27–54\nFoschino R, Nucera D, Volponi G, Picozzi C, Ortoffi M, Bottero MT (2008) Comparison of Lactococcus garvieae strains isolated in northern Italy from dairy products and fishes through molecular typing. J Appl Microbiol 105:652–662\nFrezier V, Dubourdieu D (1992) Ecology of yeast strain Saccharomyces cerevisiae during spontaneous fermentation in a Bordeaux winery. Am J Vit Enol 4:375–380\nGuillamon JM, Sabaté J, Barrio E, Cano J, Querol A (1998) Rapid identification of wine yeast species based on RFLP analysis of the ribosomal internal transcribed spacer (ITS) region. Arch Microbiol 169(5):387–392\nHenick-Kling T, Edinger W, Daniel P, Monk P (1998) Selective effects of sulfur dioxide and yeast starter culture addition on indigenous yeast populations and sensory characteristics of wine. J Appl Microbiol 84(5):865–876\nKurtzman C, Robnett C (1998) Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie Van Leeuwenhoek 73:331–371\nLe Jeune C, Erny C, Demuyter C, Lollier M (2006) Evolution of the population of Saccharomyces cerevisiae from grape to wine in a spontaneous fermentation. Food Microbiol 23:709–716\nLegras J, Karst F (2003) Optimization of inter-delta analysis for Saccharomyces cerevisiae strain characterization. FEMS Microbiol Lett 221:249–255\nLi E, Liu C, Liu Y (2012) Evaluation of yeast diversity during wine fermentation with direct inoculation and pied de cuve method at an industrial scale. J Microbiol Biotechnol 22:960–966\nLopandic K, Tiefenbrunner W, Gangl H, Mandl K, Berger S, Leitner G, Gamalat A, Ellah A, Querol A, Gardner R, Sterflinger K, Prillinger H (2008) Molecular profiling of yeasts isolated during spontaneous fermentations of Austrian wines. FEMS Yeast Res 8:1063–1075\nLurton L, Guillaume S, Clauide R, Bernard G, Alain V (1995) Influence of the fermentation yeast strain on the composition of wine spirits. J Sci Food Agric 67:485–491\nMartini A (1993) The origin and domestication of the wine yeast Saccharomyces cerevisiae. J Wine Res 4:165–176\nMercado L, Jubany S, Gaggero C, Masuelli RW, Combina M (2010) Molecular relationships between Saccharomyces cerevisiae strains involved in winemaking from Mendoza, Argentina. Curr Microbiol 61:506–514\nMortimer R, Polsinelli M (1999) On the origins of wine yeast. Res Microbiol 150:199–204\nPolsinelli M, Romano P, Suzzi G, Mortimer R (1996) Multiple strains of Saccharomyces cerevisiae on a single grape vine. Lett Appl Microbiol 23:110–114\nPovhe J, Cadez N, Zagorc T, Bubic V, Zupec A, Raspor P (2001) Yeast population dynamics in five spontaneous fermentations of Malvasia must. Food Microbiol 18:247–259\nPretorius I (2000) Tailoring wine yeast for the new millennium: novel approaches to the ancient art of winemaking. Yeast 16:675–729\nQuerol A, Barrio E, Huerta T, Ramon D (1992) Molecular monitoring of wine fermentation conducted by Active Yeast Strains. Appl Environ Microbiol 58:2948–2953\nQuerol A, Bartra E, Ramon D, Lopez V, Fernandéz-Espinar MT (2001) Study of authenticity of commercial wine yeast strains by molecular techniques. Int J Food Microbiol 70(1–2):1–10\nRomancino DP, Di Maio S, Muriella R, Oliva D (2007) Analysis of non-Saccharomyces yeast populations isolated from grape musts from Sicily (Italy). J Appl Microbiol 105:2248–2254\nRomano P, Fiore C, Paraggio M, Caruso M, Capece A (2003) Function of yeast species and strains in wine flavour. Int J Food Microbiol 86:169–180\nSabate J, Cano J, Querol A, Guillamon JM (1998) Diversity of Saccharomyces strains in wine fermentations: analysis for two consecutive years. Lett Appl Microbiol 26:452–455\nSabate J, Cano J, Esteve-Zarzoso B, Guillamón JM (2002) Isolation and identification of yeasts associated with vineyard and winery by RFLP analysis of ribosomal genes and mitochondrial DNA. Microbiol Res 157:267–274\nSangorrin MP, Zajonskovsky IE, Lopes CA, Rodrìguez ME, Giraudo de van Broock MR, Caballero AC (2001) Killer behaviour in wild wine yeasts associated with Merlot and Malbec type musts spontaneously fermented for northwestern Patagonia (Argentina). J Basic Microbiol 41:105–113\nSchutz M, Gafner J (1993) Analysis of yeast diversity during spontaneous and induced alcoholic fermentations. J Appl Microbiol 75:551–558\nVan der Walt JP, Yarrow D (1984) Methods for isolation, maintenance, classification and identification of yeasts. In: Kurtzman CP, Fell JW (eds) The yeast: a taxonomic study, 3rd edn. Elsevier, New York, pp 45–104\nVaughan- Martini A (1995) Saccharomyces barnetti and Saccharomyces spencerorum: two new species of Saccharomyces sensu lato (van der Walt). Antonie Van Leeuwenhoek 68:111–118\nVigentini I, Fracassetti D, Picozzi C, Foschino R (2009) Polymorphisms of Saccharomyces cerevisiae genes involved in wine production. Curr Microbiol 58(3):211–218\nVincenzini M, Romano P, Farris GA (2005) Microbiologia del vino. Casa Editrice Ambrosiana, Milano, pp 159–181",{"VOID":1926},"10.1007\u002Fs13213-013-0697-7","https:\u002F\u002Flink.springer.com\u002Farticle\u002F10.1007\u002Fs13213-013-0697-7",[1929,1944,1957,1972,1985,1998],{"id":1930,"sortIndex":32,"researcher":28,"roles":1931,"affiliations":1932,"properties":1941,"displayName":1943,"givenName":28,"familyName":28},"3d50db8d-2974-4a2b-b995-e53abaef5513",[965],[1933],{"id":1934,"sortIndex":32,"affiliation":1935,"properties":28},"a521baae-6383-4219-8f96-0b81f891388c",{"id":1934,"createTime":28,"updateTime":28,"relativeEntities":1936,"slug":28,"properties":1937,"entityType":28,"verifyStatus":28,"verifyTime":28,"verifyNote":28,"languages":28,"translateLanguages":28,"viewCount":28,"url":28,"parentIds":1940,"statistic":28},[],{"title":1938},{"VI":1939},"Department of Food, Environmental and Nutritional Sciences, Università Degli Studi di Milano, Milan, Italy",[],{"title":1942},{"VI":1943},"Ileana 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defined mixed bioleaching consortium (constructed by Acidithiobacills ferrooxidans ATCC 23270, Leptospirillum ferriphilum YSK, Sulfobacillus thermosulfidooxidans ST, Acidithiobacills thiooxidans A01 and Acidithiobacills caldus S1) was used to investigate the fluoride stress response. The results showed that its growth and iron oxidation rate were obviously inhibited, while the sulphur oxidation was only barely restrained. Furthermore, the community dynamics and gene expression were assayed respectively by using real-time quantitative polymerase chain reaction assay (RT-PCR) and functional gene arrays (FGAs). From the analysis of community dynamics, the most obviously inhibited strains were S. thermosulfidooxidans ST, while L. ferriphilum YSK still maintained stable growth. After 4.8 mM of fluoride stress for 28 h, the S. thermosulfidooxidans cell concentration was decreased by about 517.8 times more than in non-stress state. From the analysis of gene expression, fluoride stress was seen to exert pleiotropic effects on different species in the consortium. The dominant species played the pivotal role in resisting fluoride stress and maintaining activities in the system, yet the inferior species also had a critical function of assisting the survival of the dominant species.",{"EN":2069},"Community dynamics and function variation of a defined mixed bioleaching acidophilic bacterial consortium in the presence of fluoride",{"VOID":2071},"Akcil A, Ciftci H, Deveci H (2007) Role and contribution of pure and mixed cultures of mesophiles in bioleaching of a pyritic chalcopyrite concentrate. Miner Eng 20:310–318\nAllison DB, Cui X, Page GP, Sabripour M (2006) Microarray data analysis: from disarray to consolidation and consensus. Nat Rev Genet 7:55–65\nBrierley JA, Kuhn MC (2010) Fluoride toxicity in a chalcocite bioleach heap process. Hydrometallurgy 104:410–413\nDopson M, Baker-Austin C, Koppineedi PR, Bond PL (2003) Growth in sulfidic mineral environments: metal resistance mechanisms in acidophilic microorganisms. Microbiology 149:1959–1970\nEisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A 95:14863–14868\nFu B, Zhou H, Zhang R, Qiu G (2008) Bioleaching of chalcopyrite by pure and mixed cultures of Acidithiobacillus spp. and Leptospirillum ferriphilum. Int Biodeterior Biodegrad 62:109–115\nHe Z, Gentry TJ, Schadt CW, Wu L, Liebich J, Chong SC, Huang Z, Wu W, Jardine P, Criddle C, Zhou J (2007) GeoChip: A comprehensive microarray for investigating biogeochemical, ecological and environmental processes. ISME J 1:67–77\nLiang Y, Nostrand DV, Wang J, Zhang X, Zhou J, Li G (2009) Microarray-based functional gene analysis of soil microbial communities during ozonation and biodegradation of crude oil. Chemosphere 75:193–199\nLiu Y, Yin H, Zeng W, Liang Y, Liu Y, Ngom B, Qiu G, Shen L, Fu X, Liu X (2011) The effect of the introduction of exogenous strain Acidithiobacillus thiooxidans A01 on functional gene expression, structure and function of indigenous consortium during pyrite bioleaching. Bioresour Technol 102:8092–8098\nMarquis RE, Clock SA, Mota-Meira M (2003) Fluoride and organic weak acids as modulators of microbial physiology. FEMS Microbiol Rev 26:493–510\nRawlings DE, Johnson DB (2007) The microbiology of biomining: development and optimization of mineral-oxidizing microbial consortia. Microbiology 153:315–324\nRzhepishevska OI, Valde’s J, Marcinkeviciene L, Gallardo CA, Meskys R, Bonnefoy V, Holmes DS, Dopson M (2007) Regulation of a novel Acidithiobacillus caldus gene cluster involved in metabolism of reduced inorganic sulfur compounds. Appl Environ Microbiol 73:7367–7372\nTakayama K, Kjelleberg S (2000) The role of RNA stability during bacterial stress responses and starvation. Environ Microbiol 2(4):355–365\nVeloso TC, Sicupira LC, Rodrigues ICB, Silva LAM, Leão VA (2012) The effects of fluoride and aluminum ions on ferrous-iron oxidation and copper sulfide bioleaching with Sulfobacillus thermosulfidooxidans. Biochem Eng J 62:48–55\nXu Y, Yin H, Jiang H, Liang Y, Guo X, Ma L, Xiao Y, Liu X (2013) Comparative study of nickel resistance of pure culture and co-culture of Acidithiobacillus thiooxidans and Leptospirillum ferriphilum. Arch Microbiol 195:637–646\nYanez MA, Catalan V, Apraiz D, Figueras MJ, Martinez-Murcia AJ (2003) Phylogenetic analysis of members of the genus Aeromonas based on GyrB gene sequences. Int J Syst Evol Microbiol 53:875–883\nYin H, Cao L, Qiu G, Wang D, Laurie K, Zhou J, Dai Z, Liu X (2007) Development and evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in acid mine drainages and bioleaching systems. J Microbiol Methods 70:165–178\nYin H, Cao L, Qiu G, Wang D, Kellogg L, Zhou J, Liu X, Dai Z, Ding J, Liu X (2008) Molecular diversity of 16S rRNA and gyrB genes in copper mines. Arch Microbiol 189:101–110\nZeng W, Qiu G, Zhou H, Peng J, Chen M, Tan SM, Chao W, Liu X, Zhang Y (2010) Community structure and dynamics of the free and attached microorganisms during moderately thermophilic bioleaching of chalcopyrite concentrate. Bioresour Technol 101:7068–7075\nZhang RB, Wei MM, Ji HG, Chen XH, Qiu GZ, Zhou HB (2009) Application of real-time PCR to monitor population dynamics of defined mixed cultures of moderate thermophiles involved in bioleaching of chalcopyrite. 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