In silico Prediction of Chemical Ames Mutagenicity

Journal of Chemical Information and Modeling - Tập 52 Số 11 - Trang 2840-2847 - 2012
Congying Xu1, Feixiong Cheng1, Lei Chen1, Zheng Du1, Weihua Li1, Guixia Liu1,2, Philip W. Lee1, Yun Tang1
1Shanghai Key Laboratory of New Drug Design, School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, China
2State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 ZuChongZhi Road, Shanghai 201203, China

Tóm tắt

Từ khóa


Tài liệu tham khảo

Kramer J. A., 2007, Nat. Rev. Drug Discovery, 6, 636, 10.1038/nrd2378

Ames B. N., 1975, Mutat. Res., 31, 347, 10.1016/0165-1161(75)90046-1

Mortelmans K., 2000, Mutat. Res., 445, 29, 10.1016/S0027-5107(00)00064-6

Iurii Sushko S. N., 2010, J. Chemom., 24, 202, 10.1002/cem.1296

Benigni R., 1988, J. Toxicol. Environ. Health, 25, 135, 10.1080/15287398809531194

Hansen K., 2009, J. Chem. Inf. Model., 49, 2077, 10.1021/ci900161g

Cheng F., 2011, J. Chem. Inf. Model., 51, 996, 10.1021/ci200028n

Cheng F., 2011, J. Chem. Inf. Model., 51, 2482, 10.1021/ci200317s

Cheng F., 2011, Chemosphere, 82, 1636, 10.1016/j.chemosphere.2010.11.043

Cheng F., 2012, J. Chem. Inf. Model., 52, 655, 10.1021/ci200622d

Cheng F., 2012, Mol. BioSyst., 8, 2373, 10.1039/c2mb25110h

Guha R., 2008, J. Chem. Inf. Model., 48, 456, 10.1021/ci700188u

Votano J. R., 2004, Mutagenesis, 19, 365, 10.1093/mutage/geh043

Kazius J., 2005, J. Med. Chem., 48, 312, 10.1021/jm040835a

Zheng M., 2006, Bioinformatics, 22, 2099, 10.1093/bioinformatics/btl352

Ferrari T., 2010, Chem. Cent. J., 4, S2, 10.1186/1752-153X-4-S1-S2

Hillebrecht A., 2011, Chem. Res. Toxicol., 24, 843, 10.1021/tx2000398

Willett P., 1998, J. Chem. Inf. Comput. Sci., 38, 983, 10.1021/ci9800211

Ewing T., 2006, J. Chem. Inf. Model., 46, 2423, 10.1021/ci060155b

Wang S., 2012, Mol. Pharmaceutics, 9, 996, 10.1021/mp300023x

Chen L., 2011, Mol. Pharmaceutics, 8, 889, 10.1021/mp100465q

Lazar Toxcity Predictions.http://lazar.in-silico.de/models(accessed December 30, 2011) .

Yap C. W., 2010, J. Comput. Chem., 32, 1466, 10.1002/jcc.21707

ChemAxon.http://www.chemaxon.com(accessed January 5, 2012) .

Fourches D., 2010, J. Chem. Inf. Model., 50, 1189, 10.1021/ci100176x

Orange, version 2.0.b.http://www.ailab.si/orange/(accessed November 20, 2011) .

Chang, C.; Lin, C.J.LIBSVM, version 2.9.http://www.csie.ntu.edu.tw/∼cjlin/libsvm(accessed November 28, 2011) .

KNIME, version 2.4.2.http://www.knime.org/(accessed November 28, 2011) .

Basheer I. A., 2000, J. Microbiol. Methods, 43, 3, 10.1016/S0167-7012(00)00201-3

Martin Riedmiller, H. B.A Direct Adaptive Method for Faster Backpropagation Learning: The RPROP Algorithm.Proceedings of the IEEE International Conference on Neural Networks (ICNN) ; 1993, Vol.16, pp586–591.

Itskowitz P., 2005, J. Chem. Inf. Model., 45, 777, 10.1021/ci049628+

Corinna Cortes V. V., 1995, Machine Learning, 20, 273

Sun H., 2005, J. Med. Chem., 48, 4031, 10.1021/jm050180t

Plewczynski D., 2006, J. Chem. Inf. Model., 46, 1098, 10.1021/ci050519k

Quinlan J. R., 1993, C4.5: Programs for Machine Learning

Perez-Garrido A., 2011, J. Chem. Inf. Model., 51, 2746, 10.1021/ci2003076

Shen J., 2010, J. Chem. Inf. Model., 50, 1034, 10.1021/ci100104j

Jensen B. F., 2007, J. Med. Chem., 50, 501, 10.1021/jm060333s

Evans B. E., 1988, J. Med. Chem., 31, 2235, 10.1021/jm00120a002

Kruhlak N. L., 2007, Adv. Drug Delivery Rev., 59, 43, 10.1016/j.addr.2006.10.008

Benigni R., 2008, Mutat. Res., 659, 248, 10.1016/j.mrrev.2008.05.003

CPDB.http://potency.berkeley.edu/cpdb.html(accessed November 14, 2011) .

CCRIS.http://toxnet.nlm.nih.gov./cgi-bin/sis/htmlgen?CCRIS(accessed November 18, 2011) .

Lounkine E., 2009, J. Chem. Inf. Model., 49, 561, 10.1021/ci800377n

Chen B., 2012, J. Chem. Inf. Model., 52, 792, 10.1021/ci200615h

Benigni R., 2005, Chem. Rev., 105, 1767, 10.1021/cr030049y

Jeliazkova, N.Toxtree, version 2.5.0;http://ihcp.jrc.ec.europa.eu/our_labs/computational_toxicology/qsar_tools/toxtree(accessed December 15, 2011) .

Pavan M., 2008, SAR QSAR Environ. Res., 19, 785, 10.1080/10629360802550390