Molecular Diversity and Physical Mapping of 5S rDNA in Wild and Cultivated Oat Grasses (Poaceae: Aveneae)
Tài liệu tham khảo
Appels, 1992, The 5S DNA units of bread wheat (Triticum aestivum), Pl. Syst. Evol., 183, 195, 10.1007/BF00940802
Barciszewska, 1994, A new type of RNA editing. 5S ribosomal DNA transcripts are edited to mature 5S rRNA, Biochem. Mol. Biol. Int., 34, 437
Barciszewska, 1994, Compilation of plant 5S ribosomal RNA sequences on RNA and DNA levels, Plant Sci., 100, 117, 10.1016/0168-9452(94)90067-1
Baum, 1968, Delimitation of the genus Avena (Gramineae), Can. J. Bot., 46, 121, 10.1139/b68-022
Baum, 1992, Evolutionary change at the 5S DNA loci of species in the Triticeae, Pl. Syst. Evol., 183, 195, 10.1007/BF00940803
Baum, 1997, The molecular diversity of the 5S rRNA gene in Kengyilia alatavica (Drobov) J. L. Yang, Yen & Baum (Poaceae: Triticeae): Potential genomic assignment of different rDNA units, Genome, 40, 215, 10.1139/g97-031
Baum, 1998, The 5S rRNA gene in sea barley (Hordeum marinum Hudson sensu lato): Sequence variation among repeat units and relationship to the X haplome in barley (Hordeum), Genome, 41, 652, 10.1139/gen-41-5-652
Campsell, 1992, Sequence and organization of 5S ribosomal RNA-encoding genes of Arabidopsis thaliana, Gene, 112, 225, 10.1016/0378-1119(92)90380-8
Capesius, 1991, Sequence of the 5S rRNA gene from Sinapis alba, Pl. Mol. Biol., 17, 169, 10.1007/BF00036824
Capesius, 1993, Sequence of the 5S rRNA gene from Brassica nigra and its relation to other 5S rRNA genes from Brassicaceae, Pl. Physiol., 142, 112, 10.1016/S0176-1617(11)80117-3
Couderc, 1976, Helictotrichon pallens and H. setifolia, Taxon, 25, 188, 10.2307/1220444
Cronn, 1996, Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons, J. Mol. Evol., 42, 685, 10.1007/BF02338802
Cullis, 1988, The 25S, 18S and 5S ribosomal RNA genes from Pinus radiata D. Don, 24
Dellaporta, 1983, A plant DNA minipreparation: Version II, Pl. Mol. Biol. Rep., 1, 19, 10.1007/BF02712670
Dover, 1982, Molecular drive: A cohesive mode of species evolution, Nature, 299, 111, 10.1038/299111a0
Dover, 1994, Concerted evolution, molecular drive and natural selection, Curr. Biol., 4, 1165, 10.1016/S0960-9822(00)00265-7
Felsenstein, 1985, Confidence limits of phylogenies: An approach using the bootstrap, Evolution, 39, 783, 10.2307/2408678
Frasch, 1989, The nucleotide sequences of nuclear 5S rRNA genes and spacer regions of Petunia hybrida, Nucleic Acids Res., 17, 2857, 10.1093/nar/17.7.2857
Fukui, 1994, Physical mapping of 5S rDNA loci by direct-cloned biotinylated probes in barley chromosomes, Genome, 37, 105, 10.1139/g94-013
Gerlach, 1980, Sequence organisation of the repeating units in the nucleus of wheat which containing 5S rRNA genes, Nucleic Acids Res., 8, 4851, 10.1093/nar/8.21.4851
Gottlob-McHugh, 1990, Organization of the 5S rRNA genes in the soybean Glycine max (L.) Merrill and conservation of the 5S rDNA repeat structure in higher plants, Genome, 33, 486, 10.1139/g90-072
Grebenstein, 1995, Characterization of a highly repeated DNA component of perennial oats (Helictotrichon, Poaceae) with sequence similarity to a A-genome specific satellite DNA of rice (Oryza), Theor. Appl. Genet., 90, 1101, 10.1007/BF00222928
Grebenstein, 1996, Distribution and complex organisation of satellite DNA sequences in Aveneae species, Genome, 39, 1045, 10.1139/g96-131
Grebenstein, 1998, Molecular phylogenetic relationships in Aveneae (Poaceae) species and other grasses as inferred from ITS1 and ITS2 rDNA sequences, Pl. Syst. Evol., 213, 233, 10.1007/BF00985203
Hayes, 1992, Structure of the TFIIIA–5S DNA complex, J. Mol. Biol., 227, 407, 10.1016/0022-2836(92)90897-S
Hemleben, 1988, Sequence organization and putative regulatory elements in the 5S rRNA genes of two higher plants (Vigna radiata and Matthiola incana), Gene, 62, 165, 10.1016/0378-1119(88)90591-4
Jellen, 1994, Genomic in situ hybridization differentiates between A/D- and C-genome chromatin and detects intergenomic translocations in polyploid oat species (genus Avena), Genome, 37, 613, 10.1139/g94-087
Jukes, 1969, Evolution of protein molecules, 21
Kellogg, 1995, Intraspecific and interspecific variation in 5S RNA genes are decoupled in diploid wheat relatives, Genetics, 140, 325, 10.1093/genetics/140.1.325
Kimura, 1980, A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences, J. Mol. Evol., 16, 111, 10.1007/BF01731581
Kolchinsky, 1992, Nucleotide sequence of the 5S rRNA gene from Glycine soja, Pl. Mol. Biol., 19, 1045, 10.1007/BF00040535
Korn, 1982, Transcription of Xenopus 5S ribosomal RNA genes, Nature, 295, 101, 10.1038/295101a0
Kumar, S, Tamura, K, and, Nei, M. 1993, MEGA, Molecular Evolutionary Genetics Analysis, Version 1.0, Institute of Molecular Evolutionary Genetics Analysis, The Pennsylvania State University, University Park.
Lange, 1995, Untersuchungen zur Systematik und Taxonomie der Gattung Helictotrichon Besser ex J. A. Schultes & J. H. Schultes (Poaceae) in Südosteuropa und Vorderasien, Biblioth. Bot., 144, 1
Leggett, 1990, A new triploid hybrid between Avena eriantha and A. macrostachya, Cereal Res. Commun., 18, 97
Leggett, 1995, The genomic structure of Avena revealed by GISH, 133
Leitch, 1997, Cytological characterization of transformed plants: Mapping of low-copy and repetitive DNA sequences by fluorescent in situ hybridization (FISH), 461
Long, 1980, Repeated genes in eukaryotes, Annu. Rev. Biochem., 49, 727, 10.1146/annurev.bi.49.070180.003455
Masterson, 1994, Stomatal size in fossil plants: Evidence for polyploidy in majority of angiosperms, Science, 264, 421, 10.1126/science.264.5157.421
McIntyre, 1992, Relationships between Oryza (Poaceae) species based on 5S DNA sequences, Pl. Syst. Evol., 183, 249, 10.1007/BF00940807
Moran, 1992, The 5S RNA in Pinus radiata and the spacer region as a probe for relationships between Pinus species, Pl. Syst. Evol., 183, 209, 10.1007/BF00940804
Nolte, 1998, Differing roles for zinc fingers in DNA recognition: Structure of a six-finger transcription factor IIIA complex, Proc. Natl. Acad. Sci. USA, 95, 2938, 10.1073/pnas.95.6.2938
Nuc, 1993, The nucleotide sequence and organization of nuclear 5S rRNA genes in yellow lupine, Bull. Pol. Acad. Sci. Chem., 41, 103
Pieler, 1987, The 5S gene internal control region is composed of three distinct sequence elements, organized as two functional domains with variable spacing, Cell, 16, 91, 10.1016/0092-8674(87)90359-X
Pohler, 1991, Homoeology between the chromosomes of Avena macrostachya and the Avena C genome, Pl. Breed., 106, 250, 10.1111/j.1439-0523.1991.tb00508.x
Rawlings, 1996, Analysis of the binding of Xenopus transcription factor IIIA to oocyte 5S rRNA and to 5S rRNA gene, J. Biol. Chem., 271, 868, 10.1074/jbc.271.2.869
Röser, 1989, Karyologische, systematische und chorologische Untersuchungen an der Gattung Helictotrichon Besser ex Schultes & Schultes im westlichen Mittelmeergebiet, Diss. Bot., 145, 1
Röser, 1996, Ecogeography of the grass genus Helictotrichon (Pooideae: Aveneae) in the Mediterranean and adjacent regions, Pl. Syst. Evol., 203, 181, 10.1007/BF00983512
Röser, 1998, Character evolution of the genus Helictotrichon (Poaceae: Aveneae) reconsidered in view of recent results in Ibero-Mauritanian and Eurasian species, Flora, 193, 425, 10.1016/S0367-2530(17)30869-1
Sastri, 1992, An overview of evolution in plant 5S DNA, Pl. Syst. Evol., 183, 169, 10.1007/BF00940801
Sauer, 1984, Die Gattung Avenula (Dumort.) Dumort. auf der Balkanhalbinsel, Acta Bot. Croat., 43, 315
Schneeberger, 1989, Chromosomal and molecular analysis of the 5S RNA gene organisation in flax, Linum usitatissimum, Gene, 83, 75, 10.1016/0378-1119(89)90405-8
Schwarzacher, 1980, Application of Giemsa banding to orchid karyotype analysis, Pl. Syst. Evol., 134, 293, 10.1007/BF00986805
Scoles, 1988, Frequent duplication and deletion events in the 5S RNA genes and the associated spacer regions in the Triticeae, Pl. Syst. Evol., 160, 105, 10.1007/BF00936713
Szymanski, 1995, Are 5S ribosomal RNA primary transcripts edited?, Biochem. Mol. Biol. Int., 37, 413
Szymanski, 1998, 5S rRNA data bank, Nucleic Acids Res., 26, 156, 10.1093/nar/26.1.156
Udovicic, 1995, Phylogeny of Eucalyptus and Angophora based on 5S rDNA spacer sequence data, Mol. Phylogenet. Evol., 4, 247, 10.1006/mpev.1995.1023
Tajima, 1984, Estimation of evolutionary distance between nucleotide sequences, Mol. Biol. Evol., 1, 269
Tyler, 1986, Transcription of Neurospora crassa 5S rRNA genes require a TATA box and three internal elements, J. Mol. Biol., 196, 801, 10.1016/0022-2836(87)90406-2
Vakhitov, 1989, Nucleotide sequence of 5S rRNA genes of polyploid wheat and Aegilops species, Mol. Biol., 23, 431
Van Campenhout, 1998, Orthologous DNA sequence variation among 5S ribosomal RNA gene spacer sequences on homoeologous chromosomes 1B, 1D, and 1R of wheat and rye, Genome, 41, 244, 10.1139/g98-016
Van de Peer, 1994, TREECON: A software package for the construction and drawing of evolutionary trees, Comput. Applic. Biosci., 9, 177
Venkateswarlu, 1991, Conserved upstream sequence elements in plant 5S ribosomal RNA-encoding genes, Gene, 105, 249, 10.1016/0378-1119(91)90158-8
Wolffe, 1994, The role of transcription factors, chromatin structure and DNA replication in 5S RNA gene regulation, J. Cell. Sci., 107, 2055, 10.1242/jcs.107.8.2055
Zanke, 1995, Specific oligonucleotides of the 5S rDNA spacer and species-specific elements identify symmetric somatic hybrids between Solanum tuberosum and Solanum pinnatisectum, Theor. Appl. Genet., 90, 720, 10.1007/BF00222139
