Comparative transcriptome analysis reveals differentially expressed genes in the Asian citrus psyllid (Diaphorina citri) upon heat shock

Ying Xiong1,2,3, Xiao-Qiang Liu1,2,3, Ping-An Xiao1,2,3, Guang-Hui Tang1,2,3, Shi-Huo Liu1,2,3, Bing-Hai Lou4, Jin-Jun Wang1,2,3, Hong-Bo Jiang1,2,3
1Key Laboratory of Entomology and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, China
2State Cultivation Base of Crop Stress Biology for Southern Mountainous Land of Southwest University, Southwest University, Chongqing 400716, China
3International Joint Laboratory of China-Belgium on Sustainable Crop Pest Control, Academy of Agricultural Sciences, Southwest University, Chongqing, 400716, China
4Guangxi Key Laboratory of Citrus Biology, Guangxi Citrus Research Institute, Gulin, Guangxi 541004, China

Tài liệu tham khảo

Alves, 2014, Biology of the huanglongbing vector Diaphorina citri (Hemiptera: Liviidae) on different host plants, J. Econ. Entomol., 107, 691, 10.1603/EC13339 Anders, 2010, Differential expression analysis for sequence count data, Genome Biol., 11, R106, 10.1186/gb-2010-11-10-r106 Cassone, 2011, Divergent transcriptional response to thermal stress by Anopheles gambiae larvae carrying alternative arrangements of inversion 2La, Mol. Ecol., 20, 2567, 10.1111/j.1365-294X.2011.05114.x Concha, 2012, Organization and expression of the Australian sheep blowfly (Lucilia cuprina) hsp23, hsp24, hsp70 and hsp83 genes, Insect Mol. Biol., 21, 169, 10.1111/j.1365-2583.2011.01123.x Díaz, 2015, Differential expression patterns among heat-shock protein genes and thermal responses in the whitefly Bemisia tabaci (MEAM 1), J. Therm. Biol., 52, 199, 10.1016/j.jtherbio.2015.07.004 Esaki, 2017, Deviation of the typical AAA substrate-threading pore prevents fatal protein degradation in yeast Cdc48, Sci. Rep., 7, 5475, 10.1038/s41598-017-05806-y Garber, 2011, Computational methods for transcriptome annotation and quantification using RNA-seq, Nat. Methods, 8, 469, 10.1038/nmeth.1613 Grafton-Cardwell, 2013, Biology and management of Asian citrus psyllid, vector of the huanglongbing pathogens, Annu. Rev. Entomol., 58, 413, 10.1146/annurev-ento-120811-153542 Halbert, 2004, Distribution of the Asian citrus psyllid, Diaphorina citri Kuwayamad (Sternorrhyncha: Psyllidae) in the Caribbean basin, Fla. Entomol., 87, 401, 10.1653/0015-4040(2004)087[0401:DOTACP]2.0.CO;2 Huang, 2017, Comparative analysis of the transcriptional responses to low and high temperatures in three rice planthopper species, Mol. Ecol., 26, 2726, 10.1111/mec.14067 Hummel, 2010, Asian citrus psyllid (Hemiptera: Psyllidae) and citrus greening disease in Louisiana, Southwest. Entomol, 35, 467, 10.3958/059.035.0334 Hussain, 2017, Effect of temperature on longevity of Diaphorina citri (Hemiptera: Liviidae) studied by microcalorimeter, J. Therm. Anal. Calorim., 127, 1245, 10.1007/s10973-016-5732-z Kang, 2017, The potential coordination of the heat-shock proteins and antioxidant enzyme genes of Aphidius gifuensis in response to thermal stress, Front. Physiol., 8, 10.3389/fphys.2017.00976 Karouna-Renier, 2010, An inducible HSP70 gene from the midge Chironomus dilutus: characterization and transcription profile under environmental stress, Insect Mol. Biol., 18, 87, 10.1111/j.1365-2583.2008.00853.x King, 2015, Insect heat shock proteins during stress and diapause, Annu. Rev. Entomol., 60, 59, 10.1146/annurev-ento-011613-162107 Lin, 1956, Observations on yellow shoot on citrus, Acta Phytopathol. Sin., 2, 1 Liu, 2017, Comparative transcriptome analysis of Glyphodes pyloalis Walker (Lepidoptera: Pyralidae) reveals novel insights into heat stress tolerance in insects, BMC Genomics, 18, 974, 10.1186/s12864-017-4355-5 Livak, 2001, Analysis of relative gene expression data using real-time quantitative PCR and the 2^(−ΔΔCT) method, Methods, 25, 402, 10.1006/meth.2001.1262 Lu, 2016, Identification of a heat shock protein 90 gene involved in resistance to temperature stress in two wing-morphs of Nilaparvata lugens (Stål), Comp. Biochem. Physiol. Part A: Mol. Integr. Physiol., 197, 1, 10.1016/j.cbpa.2016.02.019 Narouei-Khandan, 2016, Global climate suitability of citrus huanglongbing and its vector, the Asian citrus psyllid, using two correlative species distribution modeling approaches, with emphasis on the USA, Eur. J. Plant Pathol., 144, 655, 10.1007/s10658-015-0804-7 Porcelli, 2015, The environmental genomics of metazoan thermal adaptation, Heredity, 114, 502, 10.1038/hdy.2014.119 Qin, 2003, Cloning and characterization of a member of the hsp70 gene family from Locusta migratoria, a highly thermotolerant insect, Cell Stress Chaperones, 8, 144, 10.1379/1466-1268(2003)008<0144:CACOAM>2.0.CO;2 Qin, 2013, Characterization and functional analysis of four glutathione S-transferases from the migratory locust, Locusta migratoria, PLoS One, 8 Tang, 2012, Stress-induced HSP70 from Musca domestica plays a functionally significant role in the immune system, J. Insect Physiol., 58, 1226, 10.1016/j.jinsphys.2012.06.007 Tian, 2018, Detection and biochemical characterization of insecticide resistance in field populations of Asian citrus psyllid in Guangdong of China, Sci. Rep., 8, 10.1038/s41598-018-30674-5 Tomaseto, 2017, Environmental conditions for Diaphorina citri Kuwayama (Hemiptera: Liviidae) take-off, J. Appl. Entomol., 142, 104, 10.1111/jen.12418 Trapnell, 2009, TopHat: discovering splice junctions with RNA-Seq, Bioinformatics, 25, 1105, 10.1093/bioinformatics/btp120 Varet, 2016, SARTools: a DESeq2- and EdgeR-based R pipeline for comprehensive differential analysis of RNA-Seq data, PLoS One, 11, 10.1371/journal.pone.0157022 Westbrook, 2011, Colonization of citrus and citrus-related germplasm by Diaphorina citri (Hemiptera: Psyllidae), Hortscience, 46, 997, 10.21273/HORTSCI.46.7.997 Yan, 2015, The push-pull strategy for citrus psyllid control, Pest Manag. Sci., 71, 893, 10.1002/ps.3915 Zheng, 2008, GOEAST: a web-based software toolkit for gene ontology enrichment analysis, Nucleic Acids Res., 36, 358, 10.1093/nar/gkn276